Wall clock time and date at job start Tue Mar 31 2020 20:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34635 * 116.99638 * 2 1 4 4 O 1.21511 * 120.00443 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99293 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99476 * 180.02562 * 5 3 2 7 7 H 1.09001 * 110.78439 * 323.20202 * 6 5 3 8 8 C 1.54598 * 110.72501 * 86.45367 * 6 5 3 9 9 C 1.53990 * 105.13791 * 140.31475 * 8 6 5 10 10 N 1.47906 * 107.06149 * 1.22238 * 9 8 6 11 11 C 1.38577 * 111.00041 * 214.15675 * 10 9 8 12 12 N 1.31216 * 126.47142 * 36.33521 * 11 10 9 13 13 N 1.28529 * 109.86110 * 179.97438 * 12 11 10 14 14 C 1.30298 * 110.05035 * 359.97438 * 13 12 11 15 15 C 1.50701 * 126.34643 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47167 * 112.92200 * 15 14 13 17 17 C 1.53001 * 109.47217 * 232.92144 * 15 14 13 18 18 C 1.50695 * 109.47168 * 352.92246 * 15 14 13 19 19 H 1.08003 * 120.00503 * 359.97438 * 18 15 14 20 20 C 1.37887 * 120.00096 * 179.97438 * 18 15 14 21 21 N 1.31511 * 119.99840 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 119.99962 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47337 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46960 * 119.99930 * 22 20 18 25 25 H 1.48503 * 109.47173 * 240.00223 * 22 20 18 26 26 N 1.36448 * 126.47551 * 216.02206 * 11 10 9 27 27 C 1.46505 * 127.13094 * 0.03756 * 26 11 10 28 28 C 1.48537 * 105.81725 * 334.67242 * 10 9 8 29 29 H 1.08998 * 109.47063 * 300.00278 * 1 2 3 30 30 H 1.09009 * 109.46760 * 60.00325 * 1 2 3 31 31 H 1.08995 * 109.47175 * 179.97438 * 1 2 3 32 32 H 0.96992 * 120.00345 * 0.02562 * 5 3 2 33 33 H 1.08994 * 110.30585 * 21.39742 * 8 6 5 34 34 H 1.09007 * 110.38934 * 259.27232 * 8 6 5 35 35 H 1.09001 * 109.91407 * 241.87128 * 9 8 6 36 36 H 1.08998 * 110.08419 * 120.66671 * 9 8 6 37 37 H 1.09002 * 109.47353 * 53.31821 * 16 15 14 38 38 H 1.09006 * 109.47292 * 173.31217 * 16 15 14 39 39 H 1.09002 * 109.47427 * 293.31731 * 16 15 14 40 40 H 1.09004 * 109.47064 * 60.00026 * 17 15 14 41 41 H 1.08998 * 109.47338 * 179.97438 * 17 15 14 42 42 H 1.08996 * 109.47236 * 300.00412 * 17 15 14 43 43 H 0.96996 * 119.99861 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.47207 * 95.36944 * 27 26 11 45 45 H 1.09004 * 109.46783 * 215.36454 * 27 26 11 46 46 H 1.08993 * 109.47566 * 335.36595 * 27 26 11 47 47 H 1.08998 * 110.66506 * 157.64406 * 28 10 9 48 48 H 1.08998 * 110.66557 * 280.76959 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0743 2.5755 0.0011 7 1 3.5230 3.2907 -0.6094 8 6 4.2424 3.1032 1.4445 9 6 5.6384 3.7524 1.4752 10 7 6.2072 3.6231 0.1160 11 6 7.5801 3.4417 0.1673 12 7 8.2432 2.7573 1.0693 13 7 9.5015 2.7984 0.8106 14 6 9.7140 3.5052 -0.2632 15 6 11.0525 3.7911 -0.8939 16 6 11.1354 3.0930 -2.2528 17 6 11.2141 5.3005 -1.0853 18 6 12.1500 3.2780 0.0022 19 1 11.9031 2.7936 0.9354 20 6 13.4695 3.4268 -0.3692 21 7 13.7702 4.0170 -1.5053 22 14 14.8299 2.7914 0.7419 23 1 14.2321 2.1729 1.9525 24 1 15.6312 1.7760 0.0124 25 1 15.7080 3.9194 1.1441 26 7 8.4971 3.9361 -0.7138 27 6 8.2328 4.7602 -1.8960 28 6 5.5370 2.4457 -0.4930 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9375 0.4567 0.0005 33 1 4.1924 2.2796 2.1566 34 1 3.4754 3.8444 1.6696 35 1 6.2731 3.2343 2.1941 36 1 5.5557 4.8054 1.7444 37 1 10.2743 3.3744 -2.8591 38 1 12.0515 3.3946 -2.7609 39 1 11.1396 2.0128 -2.1068 40 1 11.1550 5.7978 -0.1171 41 1 12.1824 5.5073 -1.5410 42 1 10.4203 5.6716 -1.7334 43 1 14.6984 4.1214 -1.7668 44 1 8.3525 5.8127 -1.6393 45 1 8.9354 4.4969 -2.6867 46 1 7.2142 4.5840 -2.2414 47 1 5.5818 2.4976 -1.5808 48 1 5.9841 1.5194 -0.1323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772161257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:59 Heat of formation + Delta-G solvation = 23.302190 kcal Electronic energy + Delta-G solvation = -29963.185846 eV Core-core repulsion = 25862.723843 eV Total energy + Delta-G solvation = -4100.462003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.38399 -40.82296 -39.18114 -36.82456 -35.84460 -34.91940 -34.13454 -31.67459 -30.74336 -29.15258 -28.09404 -27.44579 -26.90465 -25.91631 -25.14423 -22.90519 -22.41397 -21.82842 -21.03686 -20.10242 -19.23657 -19.09419 -17.61913 -16.94083 -16.72966 -16.18430 -15.77632 -15.67759 -15.53288 -14.84773 -14.45066 -14.24633 -14.12357 -13.80346 -13.46916 -13.45252 -13.10219 -12.98185 -12.52381 -12.43314 -12.40298 -12.19855 -11.83331 -11.77525 -11.44816 -11.14712 -11.10966 -11.07113 -10.92516 -10.84667 -10.71276 -10.56904 -10.24460 -10.16579 -9.97869 -9.83415 -9.58790 -9.51066 -9.05167 -8.68233 -8.43478 -8.05448 -6.05324 -4.10208 1.77460 2.33056 2.49090 2.74596 3.31123 3.39424 3.48612 3.58046 3.76895 4.07214 4.14958 4.43203 4.48088 4.76951 4.79655 4.86750 5.01228 5.05408 5.07013 5.12978 5.23333 5.25246 5.39194 5.44620 5.50547 5.64550 5.68260 5.73500 5.79105 5.90153 5.99463 6.06339 6.10864 6.39634 6.52853 6.56454 6.62418 6.63985 6.72119 7.01987 7.10604 7.14765 7.34567 7.55875 7.74945 7.79273 7.98524 8.06550 8.28022 8.96754 9.47600 9.58274 10.98914 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.002322 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.459008 B =12056.977072 C =12293.485180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.649 3.351 4 O -0.570 6.570 5 N -0.701 5.701 6 C 0.163 3.837 7 H 0.110 0.890 8 C -0.141 4.141 9 C 0.048 3.952 10 N -0.434 5.434 11 C 0.293 3.707 12 N -0.319 5.319 13 N -0.286 5.286 14 C 0.245 3.755 15 C 0.144 3.856 16 C -0.128 4.128 17 C -0.136 4.136 18 C -0.491 4.491 19 H 0.077 0.923 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.285 1.285 26 N -0.472 5.472 27 C 0.081 3.919 28 C 0.039 3.961 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.409 0.591 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.008 0.992 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.098 0.902 42 H 0.013 0.987 43 H 0.260 0.740 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.793 -2.865 -1.765 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.458 6.458 5 N -0.360 5.360 6 C 0.058 3.942 7 H 0.128 0.872 8 C -0.180 4.180 9 C -0.080 4.080 10 N -0.159 5.159 11 C -0.063 4.063 12 N -0.164 5.164 13 N -0.124 5.124 14 C -0.021 4.021 15 C 0.141 3.859 16 C -0.187 4.187 17 C -0.194 4.194 18 C -0.530 4.530 19 H 0.096 0.904 20 C -0.138 4.138 21 N -0.534 5.534 22 Si 0.727 3.273 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.211 1.211 26 N -0.164 5.164 27 C -0.062 4.062 28 C -0.089 4.089 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.245 0.755 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.864 -2.717 -0.960 22.053 hybrid contribution 0.630 -0.414 -0.177 0.774 sum -21.234 -3.131 -1.137 21.494 Atomic orbital electron populations 1.23208 0.74221 1.03533 1.02801 1.86252 1.24347 1.31060 1.87038 1.18104 0.83363 0.82222 0.76164 1.91012 1.64552 1.34833 1.55432 1.44631 1.03096 1.10256 1.78001 1.21805 0.91882 0.83071 0.97428 0.87183 1.22871 0.97090 1.01396 0.96639 1.22890 0.94213 1.02417 0.88474 1.61364 0.97507 1.36796 1.20274 1.22210 0.89447 1.01589 0.93081 1.74436 1.00684 1.18432 1.22825 1.74121 1.05951 1.18783 1.13567 1.26262 0.88275 0.94556 0.93034 1.16965 0.82205 0.93764 0.92932 1.21904 1.00837 0.99277 0.96654 1.21974 1.02615 0.95724 0.99113 1.21101 0.88994 1.37233 1.05670 0.90450 1.24878 0.98584 0.95042 0.95323 1.69795 1.18337 1.43617 1.21631 0.86391 0.81446 0.78484 0.80941 1.19454 1.21112 1.21141 1.46196 1.06971 1.40593 1.22686 1.22095 1.03012 0.94998 0.86095 1.23483 0.91801 0.92878 1.00746 0.91776 0.91790 0.87928 0.75529 0.90314 0.89738 0.90285 0.89503 0.97291 0.88673 0.94558 0.95069 0.88342 0.96790 0.92978 0.90542 0.88923 0.89882 0.88793 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -3.47 10.62 -40.31 -0.43 -3.90 16 3 C 0.65 7.03 8.75 54.06 0.47 7.50 16 4 O -0.57 -7.74 15.86 -19.28 -0.31 -8.04 16 5 N -0.70 -6.34 5.15 -56.90 -0.29 -6.63 16 6 C 0.16 1.57 3.34 -66.07 -0.22 1.35 16 7 H 0.11 1.13 7.70 -51.93 -0.40 0.73 16 8 C -0.14 -1.39 6.67 -25.38 -0.17 -1.56 16 9 C 0.05 0.58 6.63 -2.75 -0.02 0.56 16 10 N -0.43 -5.87 5.28 -170.55 -0.90 -6.77 16 11 C 0.29 5.22 6.69 -318.89 -2.13 3.08 16 12 N -0.32 -6.75 11.07 30.31 0.34 -6.42 16 13 N -0.29 -6.91 11.01 32.99 0.36 -6.55 16 14 C 0.25 5.49 6.34 -154.02 -0.98 4.52 16 15 C 0.14 3.38 0.52 -156.82 -0.08 3.30 16 16 C -0.13 -2.84 8.09 37.16 0.30 -2.54 16 17 C -0.14 -2.99 8.08 37.16 0.30 -2.69 16 18 C -0.49 -13.08 7.91 -34.44 -0.27 -13.35 16 19 H 0.08 2.20 6.96 -52.48 -0.37 1.83 16 20 C 0.06 1.63 5.15 -17.82 -0.09 1.54 16 21 N -0.89 -23.28 9.43 55.43 0.52 -22.76 16 22 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 N -0.47 -8.65 3.21 -121.46 -0.39 -9.04 16 27 C 0.08 1.13 9.38 59.85 0.56 1.69 16 28 C 0.04 0.43 6.10 -1.90 -0.01 0.42 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 3.01 8.64 -40.82 -0.35 2.66 16 33 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.13 6.91 -51.93 -0.36 0.77 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.01 0.16 5.72 -51.93 -0.30 -0.14 16 38 H 0.09 2.26 6.28 -51.93 -0.33 1.93 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 42 H 0.01 0.25 5.47 -51.93 -0.28 -0.03 16 43 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 44 H 0.08 1.00 7.63 -51.93 -0.40 0.60 16 45 H 0.09 1.29 5.32 -51.93 -0.28 1.01 16 46 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -31.91 380.83 -8.78 -40.70 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.13 Total: 2.37 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.27 Total: 5.25 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.36 Total: -58.16 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.73 Total: -11.94 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.91 -8.78 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772161257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.998 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds