Wall clock time and date at job start Tue Mar 31 2020 21:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.48897 * 2 1 4 4 C 1.53050 * 109.49260 * 239.95030 * 2 1 3 5 5 N 1.46955 * 109.36302 * 181.62975 * 4 2 1 6 6 C 1.46908 * 110.99772 * 183.18846 * 5 4 2 7 7 C 1.50697 * 109.47087 * 66.85551 * 6 5 4 8 8 O 1.21280 * 119.99935 * 6.57806 * 7 6 5 9 9 N 1.34772 * 119.99964 * 186.58367 * 7 6 5 10 10 C 1.46498 * 119.99927 * 180.02562 * 9 7 6 11 11 C 1.47199 * 109.47114 * 179.97438 * 10 9 7 12 12 N 8.81053 * 109.07660 * 261.08969 * 2 1 3 13 13 C 1.46958 * 110.88227 * 59.32510 * 5 4 2 14 14 C 1.53050 * 109.36064 * 300.67630 * 13 5 4 15 15 H 1.08997 * 109.49047 * 298.40761 * 14 13 5 16 16 C 1.53003 * 109.48800 * 178.36659 * 14 13 5 17 17 N 1.46954 * 109.38387 * 58.39180 * 14 13 5 18 18 C 1.46903 * 111.01850 * 176.83200 * 17 14 13 19 19 C 1.50703 * 109.46988 * 58.99733 * 18 17 14 20 20 O 1.21284 * 120.00077 * 5.31542 * 19 18 17 21 21 N 1.34770 * 119.99742 * 185.31114 * 19 18 17 22 22 C 1.37107 * 119.99938 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99774 * 0.02562 * 22 21 19 24 24 C 1.38946 * 119.99757 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00482 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99847 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47049 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46865 * 119.99838 * 26 24 22 29 29 H 1.48495 * 109.47387 * 240.00252 * 26 24 22 30 30 H 1.08999 * 109.46803 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47183 * 300.00706 * 1 2 3 32 32 H 1.09006 * 109.46979 * 60.01057 * 1 2 3 33 33 H 1.08995 * 109.48691 * 301.59679 * 4 2 1 34 34 H 1.08999 * 109.48703 * 61.66605 * 4 2 1 35 35 H 1.09005 * 109.46612 * 186.85411 * 6 5 4 36 36 H 1.08995 * 109.47099 * 306.85500 * 6 5 4 37 37 H 0.96999 * 119.99873 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.47247 * 299.99799 * 10 9 7 39 39 H 1.09006 * 109.47452 * 60.00014 * 10 9 7 40 40 H 1.09004 * 109.49043 * 60.64256 * 13 5 4 41 41 H 1.09002 * 109.49149 * 180.71162 * 13 5 4 42 42 H 1.08997 * 109.47142 * 61.73267 * 16 14 13 43 43 H 1.09003 * 109.46968 * 181.72939 * 16 14 13 44 44 H 1.08998 * 109.47505 * 301.73135 * 16 14 13 45 45 H 1.09002 * 109.46603 * 178.99630 * 18 17 14 46 46 H 1.08990 * 109.47293 * 298.99595 * 18 17 14 47 47 H 0.97005 * 120.00262 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00838 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 3.5097 -0.7550 -1.2264 6 6 4.0412 -1.3748 -2.4477 7 6 3.7374 -0.4933 -3.6315 8 8 3.2447 0.6018 -3.4616 9 7 4.0131 -0.9219 -4.8792 10 6 3.7182 -0.0648 -6.0300 11 6 4.1091 -0.7559 -7.2695 12 7 4.4095 -1.2897 -8.2262 13 6 4.0000 -1.4490 -0.0274 14 6 3.4893 -0.7265 1.2215 15 1 3.8758 0.2925 1.2357 16 6 3.9643 -1.4701 2.4715 17 7 2.0203 -0.6935 1.1994 18 6 1.4888 -0.0732 2.4204 19 6 2.0217 1.3310 2.5433 20 8 2.6919 1.8057 1.6508 21 7 1.7535 2.0594 3.6451 22 6 2.2378 3.3372 3.7568 23 1 2.8339 3.7601 2.9617 24 6 1.9617 4.0880 4.8929 25 7 1.2368 3.5732 5.8605 26 14 2.6223 5.8286 5.0454 27 1 3.4038 6.1698 3.8297 28 1 1.4887 6.7775 5.1870 29 1 3.4988 5.9226 6.2404 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8901 33 1 1.6545 -1.7416 -1.2628 34 1 1.7023 -0.1927 -2.1393 35 1 5.1203 -1.4970 -2.3530 36 1 3.5764 -2.3501 -2.5920 37 1 4.4074 -1.7977 -5.0151 38 1 2.6506 0.1535 -6.0565 39 1 4.2774 0.8668 -5.9421 40 1 3.6361 -2.4765 -0.0275 41 1 5.0900 -1.4489 -0.0273 42 1 5.0538 -1.4691 2.5027 43 1 3.5749 -0.9730 3.3599 44 1 3.6026 -2.4979 2.4423 45 1 0.4003 -0.0457 2.3696 46 1 1.7974 -0.6562 3.2880 47 1 1.2177 1.6797 4.3591 48 1 1.0437 4.0974 6.6536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191142811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:19 Heat of formation + Delta-G solvation = -10.514065 kcal Electronic energy + Delta-G solvation = -30050.805161 eV Core-core repulsion = 25948.876776 eV Total energy + Delta-G solvation = -4101.928386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39302 -39.58553 -37.72729 -37.20660 -35.23809 -34.78076 -33.75598 -33.21688 -31.29238 -30.30452 -28.91306 -27.31558 -26.48783 -26.26373 -24.35132 -22.33894 -20.98035 -20.78289 -19.73941 -18.93808 -18.78045 -17.71069 -17.05938 -16.32219 -16.16296 -15.81710 -15.69413 -15.50566 -15.16952 -14.68143 -14.47429 -14.40448 -14.04116 -13.75116 -13.72380 -13.43435 -13.13655 -13.05213 -12.93563 -12.66517 -12.45843 -12.39256 -12.10845 -11.96434 -11.62902 -11.52419 -11.31860 -11.18870 -11.10828 -11.04286 -10.48472 -10.33200 -10.31106 -10.21211 -10.11930 -9.88020 -9.60008 -9.37739 -9.12407 -8.23820 -7.93267 -7.28700 -6.40649 -3.81391 1.77885 2.16053 2.40296 2.90582 3.16372 3.27556 3.33530 3.35159 3.89358 3.93398 4.19185 4.32583 4.46202 4.82131 4.93443 4.96521 5.05436 5.06674 5.19735 5.21335 5.34136 5.45041 5.58426 5.61513 5.68786 5.78812 5.84283 5.87267 5.90897 5.98275 6.00799 6.09922 6.12384 6.29114 6.40313 6.45342 6.46774 6.76988 6.78279 6.87812 6.99256 7.13080 7.16006 7.50707 7.56434 7.60557 7.93168 8.07388 8.62105 9.19033 9.55433 10.06770 10.76034 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002526 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.813129 B =11082.210131 C =11887.761715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 H 0.096 0.904 4 C 0.069 3.931 5 N -0.518 5.518 6 C 0.040 3.960 7 C 0.517 3.483 8 O -0.499 6.499 9 N -0.739 5.739 10 C 0.219 3.781 11 C 0.196 3.804 12 N -0.410 5.410 13 C 0.072 3.928 14 C 0.063 3.937 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.508 5.508 18 C 0.034 3.966 19 C 0.408 3.592 20 O -0.583 6.583 21 N -0.560 5.560 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.900 5.900 26 Si 0.927 3.073 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.405 0.595 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -13.779 -14.901 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 H 0.114 0.886 4 C -0.059 4.059 5 N -0.242 5.242 6 C -0.092 4.092 7 C 0.303 3.697 8 O -0.371 6.371 9 N -0.397 5.397 10 C 0.093 3.907 11 C -0.122 4.122 12 N -0.088 5.088 13 C -0.056 4.056 14 C -0.045 4.045 15 H 0.114 0.886 16 C -0.201 4.201 17 N -0.232 5.232 18 C -0.098 4.098 19 C 0.194 3.806 20 O -0.470 6.470 21 N -0.196 5.196 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.754 3.246 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.239 0.761 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.301 -13.342 -16.606 21.556 hybrid contribution 0.037 0.406 0.912 0.999 sum 3.338 -12.936 -15.694 20.610 Atomic orbital electron populations 1.21833 0.95065 1.01338 1.01846 1.21857 0.94137 0.99927 0.88278 0.88644 1.22266 0.85789 0.98560 0.99269 1.61748 1.09740 1.52787 0.99920 1.21908 1.02474 0.95126 0.89669 1.20726 0.77913 0.87936 0.83118 1.90796 1.40749 1.20746 1.84765 1.45892 1.67470 1.21153 1.05151 1.18595 1.03555 0.92609 0.75973 1.29086 0.93554 0.94435 0.95172 1.81291 1.08783 1.07624 1.11081 1.22186 0.99195 0.95169 0.89054 1.21908 0.88223 1.01520 0.92897 0.88622 1.21831 1.00409 1.00137 0.97717 1.62686 1.08293 1.50878 1.01382 1.22161 1.00739 0.92725 0.94154 1.21096 0.86413 0.88705 0.84391 1.90448 1.43551 1.72718 1.40254 1.42068 1.46492 1.13769 1.17241 1.19759 1.29884 0.89296 1.03811 0.87928 1.25262 0.97052 1.00262 0.95369 1.69616 1.38399 1.38127 1.08011 0.85832 0.78538 0.81815 0.78372 1.19229 1.20777 1.20792 0.92771 0.92207 0.92572 0.95266 0.89772 0.87598 0.92084 0.76111 0.86736 0.86661 0.94633 0.90755 0.92630 0.92071 0.92715 0.89114 0.89315 0.77527 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.87 37.16 0.33 -1.76 16 2 C 0.07 1.11 2.21 -67.65 -0.15 0.96 16 3 H 0.10 2.07 5.66 -51.93 -0.29 1.77 16 4 C 0.07 0.98 4.55 -3.77 -0.02 0.96 16 5 N -0.52 -6.98 4.39 -235.90 -1.04 -8.02 16 6 C 0.04 0.35 5.45 -4.97 -0.03 0.33 16 7 C 0.52 4.91 7.38 -10.99 -0.08 4.83 16 8 O -0.50 -7.06 14.74 5.56 0.08 -6.97 16 9 N -0.74 -4.12 5.54 -63.16 -0.35 -4.47 16 10 C 0.22 1.05 6.15 -6.83 -0.04 1.01 16 11 C 0.20 1.24 15.55 -20.76 -0.32 0.92 16 12 N -0.41 -3.85 18.54 42.15 0.78 -3.07 16 13 C 0.07 0.93 4.89 -3.77 -0.02 0.91 16 14 C 0.06 1.01 2.13 -67.66 -0.14 0.87 16 15 H 0.10 1.99 5.55 -51.93 -0.29 1.71 16 16 C -0.14 -2.00 8.91 37.16 0.33 -1.67 16 17 N -0.51 -8.31 4.55 -219.99 -1.00 -9.31 16 18 C 0.03 0.59 5.03 -4.97 -0.03 0.57 16 19 C 0.41 9.26 7.16 -10.99 -0.08 9.19 16 20 O -0.58 -14.99 11.17 5.55 0.06 -14.92 16 21 N -0.56 -13.91 5.29 -10.97 -0.06 -13.96 16 22 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 26 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.93 6.26 -51.93 -0.32 0.61 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 1.23 6.14 -51.93 -0.32 0.91 16 35 H 0.11 0.73 8.01 -51.93 -0.42 0.32 16 36 H 0.06 0.42 8.11 -51.93 -0.42 -0.01 16 37 H 0.40 1.31 8.45 -40.82 -0.34 0.97 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.95 6.29 -51.93 -0.33 0.62 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.49 5.98 -51.93 -0.31 1.18 16 46 H 0.09 1.43 6.27 -51.93 -0.33 1.11 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -34.14 384.91 -7.51 -41.65 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.00 Total: 11.57 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -0.49 Total: 9.26 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.94 Total: -62.46 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.14 Total: -21.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.14 -7.51 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191142811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.140 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds