Wall clock time and date at job start Tue Mar 31 2020 20:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47225 * 2 1 4 4 N 1.46503 * 109.47143 * 240.00378 * 2 1 3 5 5 C 1.39990 * 120.00050 * 85.00052 * 4 2 1 6 6 C 1.40428 * 125.97585 * 359.97438 * 5 4 2 7 7 C 1.35250 * 107.86268 * 180.02562 * 6 5 4 8 8 N 1.34955 * 107.86330 * 0.02562 * 7 6 5 9 9 C 1.46495 * 125.97452 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47571 * 125.00257 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 N 1.31221 * 125.97652 * 180.37589 * 5 4 2 19 19 C 1.50700 * 109.46939 * 120.00347 * 2 1 3 20 20 O 1.21236 * 119.99613 * 119.99790 * 19 2 1 21 21 N 1.34773 * 119.99816 * 299.99975 * 19 2 1 22 22 C 1.34775 * 119.99502 * 180.02562 * 21 19 2 23 23 O 1.21537 * 120.00508 * 359.97438 * 22 21 19 24 24 N 1.34776 * 120.00040 * 180.02562 * 22 21 19 25 25 C 1.46498 * 120.00469 * 180.02562 * 24 22 21 26 26 C 1.53004 * 109.47134 * 59.99505 * 25 24 22 27 27 C 1.52997 * 109.47557 * 179.97438 * 25 24 22 28 28 C 1.53002 * 109.46839 * 299.99574 * 25 24 22 29 29 H 1.08998 * 109.46831 * 59.99995 * 1 2 3 30 30 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46885 * 299.99546 * 1 2 3 32 32 H 0.96997 * 120.00236 * 265.00110 * 4 2 1 33 33 H 1.08006 * 126.06874 * 0.07867 * 6 5 4 34 34 H 1.07997 * 126.06549 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47378 * 4.99917 * 9 8 7 36 36 H 1.09001 * 109.47153 * 245.00037 * 9 8 7 37 37 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 38 38 H 0.96996 * 120.00430 * 0.02562 * 21 19 2 39 39 H 0.96996 * 119.99892 * 359.97438 * 24 22 21 40 40 H 1.09000 * 109.46787 * 60.00221 * 26 25 24 41 41 H 1.09001 * 109.47011 * 180.02562 * 26 25 24 42 42 H 1.09001 * 109.47159 * 300.00375 * 26 25 24 43 43 H 1.08998 * 109.46971 * 59.99426 * 27 25 24 44 44 H 1.08998 * 109.47776 * 179.97438 * 27 25 24 45 45 H 1.09000 * 109.47132 * 300.00249 * 27 25 24 46 46 H 1.09001 * 109.46995 * 59.99906 * 28 25 24 47 47 H 1.08998 * 109.46946 * 179.97438 * 28 25 24 48 48 H 1.08993 * 109.47046 * 299.99648 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1521 0.0079 -2.4021 6 6 1.8557 1.3652 -2.6065 7 6 2.1167 1.6565 -3.9012 8 7 2.5609 0.5302 -4.4974 9 6 2.9583 0.3990 -5.9013 10 6 4.3588 -0.1522 -5.9777 11 1 4.8990 -0.3815 -5.0710 12 6 4.9508 -0.3628 -7.2048 13 7 6.1750 -0.8388 -7.2713 14 14 4.0168 0.0344 -8.7730 15 1 3.2612 -1.1648 -9.2163 16 1 3.0699 1.1491 -8.5163 17 1 4.9766 0.4345 -9.8331 18 7 2.5694 -0.4930 -3.5409 19 6 2.0323 -0.7105 1.2304 20 8 2.7293 -1.6962 1.1191 21 7 1.7067 -0.2501 2.4545 22 6 2.1564 -0.8852 3.5549 23 8 2.8551 -1.8734 3.4434 24 7 1.8304 -0.4252 4.7790 25 6 2.3196 -1.1152 5.9752 26 6 3.8496 -1.1135 5.9750 27 6 1.8094 -0.3942 7.2245 28 6 1.8111 -2.5583 5.9752 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2491 -1.6317 -1.1528 33 1 1.4857 2.0545 -1.8617 34 1 1.9912 2.6193 -4.3741 35 1 2.9263 1.3773 -6.3810 36 1 2.2731 -0.2782 -6.4112 37 1 6.5930 -0.9832 -8.1346 38 1 1.1488 0.5383 2.5436 39 1 1.2724 0.3632 4.8681 40 1 4.2118 -0.0855 5.9750 41 1 4.2136 -1.6273 6.8648 42 1 4.2134 -1.6270 5.0850 43 1 0.7194 -0.3950 7.2247 44 1 2.1730 -0.9079 8.1144 45 1 2.1719 0.6337 7.2242 46 1 2.1749 -3.0717 5.0852 47 1 2.1754 -3.0718 6.8649 48 1 0.7212 -2.5594 5.9754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:02 Heat of formation + Delta-G solvation = 26.979734 kcal Electronic energy + Delta-G solvation = -28731.091046 eV Core-core repulsion = 24630.788514 eV Total energy + Delta-G solvation = -4100.302532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56924 -40.33720 -39.38836 -36.91632 -35.72457 -34.91261 -33.39366 -32.20254 -31.59984 -30.09462 -28.89987 -27.82451 -27.57601 -26.89282 -25.33813 -22.93381 -22.38665 -20.78514 -20.49574 -19.93873 -19.53007 -19.04699 -17.49637 -16.91385 -16.46057 -16.21429 -15.92430 -15.83572 -15.04633 -14.91085 -14.67964 -14.39556 -14.34625 -13.94734 -13.86543 -13.72658 -13.09534 -12.96589 -12.87390 -12.55555 -12.50006 -12.49847 -12.46757 -12.32765 -12.07145 -12.00591 -11.72064 -11.56187 -11.54503 -11.04101 -10.80584 -10.74918 -10.30107 -10.29556 -9.83677 -9.74120 -9.61159 -9.50091 -9.34964 -8.70672 -8.00780 -7.12080 -6.16924 -4.18811 1.86968 1.95715 2.80812 3.03255 3.06601 3.20072 3.24324 3.28338 3.51312 3.67486 4.07104 4.22815 4.27762 4.34536 4.48981 4.63099 4.81044 4.93522 5.07581 5.10536 5.20213 5.24249 5.28121 5.40310 5.41361 5.42922 5.52641 5.54531 5.60567 5.78506 5.82498 5.91125 5.96290 6.05988 6.13593 6.18063 6.24168 6.39722 6.44458 6.63839 6.94061 7.20040 7.35770 7.58521 7.79688 7.89603 8.11054 8.14660 8.41641 8.78992 8.95404 9.37984 10.95938 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.001890 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.807642 B =14812.203934 C =15423.589672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.160 3.840 3 H 0.108 0.892 4 N -0.712 5.712 5 C 0.311 3.689 6 C -0.332 4.332 7 C 0.068 3.932 8 N -0.325 5.325 9 C 0.233 3.767 10 C -0.532 4.532 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.888 5.888 14 Si 0.875 3.125 15 H -0.272 1.272 16 H -0.266 1.266 17 H -0.281 1.281 18 N -0.319 5.319 19 C 0.513 3.487 20 O -0.453 6.453 21 N -0.690 5.690 22 C 0.695 3.305 23 O -0.522 6.522 24 N -0.733 5.733 25 C 0.184 3.816 26 C -0.167 4.167 27 C -0.154 4.154 28 C -0.167 4.167 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.133 0.867 34 H 0.164 0.836 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.409 0.591 39 H 0.396 0.604 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.852 7.964 28.204 33.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.048 3.952 3 H 0.126 0.874 4 N -0.356 5.356 5 C 0.055 3.945 6 C -0.365 4.365 7 C -0.083 4.083 8 N -0.104 5.104 9 C 0.114 3.886 10 C -0.570 4.570 11 H 0.104 0.896 12 C -0.129 4.129 13 N -0.526 5.526 14 Si 0.701 3.299 15 H -0.198 1.198 16 H -0.190 1.190 17 H -0.207 1.207 18 N -0.151 5.151 19 C 0.298 3.702 20 O -0.319 6.319 21 N -0.357 5.357 22 C 0.395 3.605 23 O -0.394 6.394 24 N -0.391 5.391 25 C 0.099 3.901 26 C -0.225 4.225 27 C -0.212 4.212 28 C -0.225 4.225 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.182 0.818 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.230 0.770 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.155 5.422 27.156 31.100 hybrid contribution -1.125 1.563 -0.314 1.952 sum -15.281 6.985 26.842 31.667 Atomic orbital electron populations 1.22324 0.93586 1.03465 1.03182 1.20414 0.94860 0.97114 0.82769 0.87422 1.43001 1.76565 1.12306 1.03722 1.19061 0.97756 0.90683 0.87045 1.20726 1.23247 0.95368 0.97180 1.22331 0.99325 0.93026 0.93658 1.48585 1.46967 1.04935 1.09930 1.19984 0.97721 0.98367 0.72504 1.21132 0.96584 1.43865 0.95436 0.89614 1.24850 0.94895 0.94464 0.98681 1.69883 1.13118 1.44044 1.25513 0.86885 0.80074 0.79353 0.83566 1.19761 1.19030 1.20672 1.77568 1.28731 1.12453 0.96304 1.21098 0.80191 0.85132 0.83788 1.90862 1.32090 1.23426 1.85519 1.44177 1.52696 1.32389 1.06446 1.16150 0.80766 0.83310 0.80296 1.91029 1.38378 1.24931 1.85014 1.45476 1.56361 1.33159 1.04079 1.20252 0.94506 0.92515 0.82856 1.22274 0.94002 1.02343 1.03914 1.22083 1.01601 1.00836 0.96642 1.22266 1.00873 0.95414 1.03903 0.90055 0.91637 0.91777 0.75266 0.84950 0.81843 0.93181 0.94656 0.92250 0.75628 0.76961 0.92674 0.91712 0.90017 0.91870 0.90558 0.91828 0.90032 0.91723 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.40 37.16 0.35 -0.95 16 2 C 0.16 1.73 2.98 -69.08 -0.21 1.52 16 3 H 0.11 0.98 7.14 -51.93 -0.37 0.61 16 4 N -0.71 -11.38 5.16 -54.70 -0.28 -11.66 16 5 C 0.31 5.95 8.14 -154.55 -1.26 4.69 16 6 C -0.33 -5.46 9.92 -39.82 -0.40 -5.85 16 7 C 0.07 1.22 11.44 -17.24 -0.20 1.02 16 8 N -0.33 -7.34 3.66 -62.56 -0.23 -7.57 16 9 C 0.23 5.61 5.33 -5.20 -0.03 5.58 16 10 C -0.53 -15.41 9.79 -34.44 -0.34 -15.75 16 11 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 12 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -27.30 13.96 55.43 0.77 -26.52 16 14 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 N -0.32 -7.54 12.43 31.41 0.39 -7.14 16 19 C 0.51 6.24 7.16 -10.99 -0.08 6.17 16 20 O -0.45 -8.02 14.24 -18.21 -0.26 -8.28 16 21 N -0.69 -5.59 5.13 -15.78 -0.08 -5.67 16 22 C 0.69 7.20 7.92 -86.92 -0.69 6.51 16 23 O -0.52 -8.10 10.95 -18.47 -0.20 -8.31 16 24 N -0.73 -4.55 5.11 -52.43 -0.27 -4.82 16 25 C 0.18 1.20 1.06 -131.82 -0.14 1.06 16 26 C -0.17 -1.34 8.40 37.16 0.31 -1.03 16 27 C -0.15 -0.53 8.59 37.16 0.32 -0.21 16 28 C -0.17 -1.29 8.40 37.16 0.31 -0.97 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.26 7.56 -51.93 -0.39 -0.14 16 32 H 0.41 7.20 7.92 -40.82 -0.32 6.88 16 33 H 0.13 1.64 7.45 -52.48 -0.39 1.25 16 34 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.05 1.10 7.12 -51.93 -0.37 0.73 16 36 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 38 H 0.41 1.28 8.13 -40.82 -0.33 0.94 16 39 H 0.40 1.03 8.49 -40.82 -0.35 0.69 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 43 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.08 0.92 6.16 -51.93 -0.32 0.60 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -39.54 394.27 -8.40 -47.94 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.38 Total: 6.41 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.13 Total: 3.83 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.30 Total: -63.39 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.46 Total: -16.59 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.54 -8.40 -47.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.919 kcal (2) G-P(sol) polarization free energy of solvation -39.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds