Wall clock time and date at job start Tue Mar 31 2020 20:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47225 * 2 1 4 4 N 1.46503 * 109.47143 * 240.00378 * 2 1 3 5 5 C 1.39990 * 120.00050 * 85.00052 * 4 2 1 6 6 C 1.40428 * 125.97585 * 359.97438 * 5 4 2 7 7 C 1.35250 * 107.86268 * 180.02562 * 6 5 4 8 8 N 1.34955 * 107.86330 * 0.02562 * 7 6 5 9 9 C 1.46495 * 125.97452 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47571 * 125.00257 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 N 1.31221 * 125.97652 * 180.37589 * 5 4 2 19 19 C 1.50700 * 109.46939 * 120.00347 * 2 1 3 20 20 O 1.21236 * 119.99613 * 119.99790 * 19 2 1 21 21 N 1.34773 * 119.99816 * 299.99975 * 19 2 1 22 22 C 1.34775 * 119.99502 * 180.02562 * 21 19 2 23 23 O 1.21537 * 120.00508 * 359.97438 * 22 21 19 24 24 N 1.34776 * 120.00040 * 180.02562 * 22 21 19 25 25 C 1.46498 * 120.00469 * 180.02562 * 24 22 21 26 26 C 1.53004 * 109.47134 * 59.99505 * 25 24 22 27 27 C 1.52997 * 109.47557 * 179.97438 * 25 24 22 28 28 C 1.53002 * 109.46839 * 299.99574 * 25 24 22 29 29 H 1.08998 * 109.46831 * 59.99995 * 1 2 3 30 30 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46885 * 299.99546 * 1 2 3 32 32 H 0.96997 * 120.00236 * 265.00110 * 4 2 1 33 33 H 1.08006 * 126.06874 * 0.07867 * 6 5 4 34 34 H 1.07997 * 126.06549 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47378 * 4.99917 * 9 8 7 36 36 H 1.09001 * 109.47153 * 245.00037 * 9 8 7 37 37 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 38 38 H 0.96996 * 120.00430 * 0.02562 * 21 19 2 39 39 H 0.96996 * 119.99892 * 359.97438 * 24 22 21 40 40 H 1.09000 * 109.46787 * 60.00221 * 26 25 24 41 41 H 1.09001 * 109.47011 * 180.02562 * 26 25 24 42 42 H 1.09001 * 109.47159 * 300.00375 * 26 25 24 43 43 H 1.08998 * 109.46971 * 59.99426 * 27 25 24 44 44 H 1.08998 * 109.47776 * 179.97438 * 27 25 24 45 45 H 1.09000 * 109.47132 * 300.00249 * 27 25 24 46 46 H 1.09001 * 109.46995 * 59.99906 * 28 25 24 47 47 H 1.08998 * 109.46946 * 179.97438 * 28 25 24 48 48 H 1.08993 * 109.47046 * 299.99648 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1521 0.0079 -2.4021 6 6 1.8557 1.3652 -2.6065 7 6 2.1167 1.6565 -3.9012 8 7 2.5609 0.5302 -4.4974 9 6 2.9583 0.3990 -5.9013 10 6 4.3588 -0.1522 -5.9777 11 1 4.8990 -0.3815 -5.0710 12 6 4.9508 -0.3628 -7.2048 13 7 6.1750 -0.8388 -7.2713 14 14 4.0168 0.0344 -8.7730 15 1 3.2612 -1.1648 -9.2163 16 1 3.0699 1.1491 -8.5163 17 1 4.9766 0.4345 -9.8331 18 7 2.5694 -0.4930 -3.5409 19 6 2.0323 -0.7105 1.2304 20 8 2.7293 -1.6962 1.1191 21 7 1.7067 -0.2501 2.4545 22 6 2.1564 -0.8852 3.5549 23 8 2.8551 -1.8734 3.4434 24 7 1.8304 -0.4252 4.7790 25 6 2.3196 -1.1152 5.9752 26 6 3.8496 -1.1135 5.9750 27 6 1.8094 -0.3942 7.2245 28 6 1.8111 -2.5583 5.9752 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.2491 -1.6317 -1.1528 33 1 1.4857 2.0545 -1.8617 34 1 1.9912 2.6193 -4.3741 35 1 2.9263 1.3773 -6.3810 36 1 2.2731 -0.2782 -6.4112 37 1 6.5930 -0.9832 -8.1346 38 1 1.1488 0.5383 2.5436 39 1 1.2724 0.3632 4.8681 40 1 4.2118 -0.0855 5.9750 41 1 4.2136 -1.6273 6.8648 42 1 4.2134 -1.6270 5.0850 43 1 0.7194 -0.3950 7.2247 44 1 2.1730 -0.9079 8.1144 45 1 2.1719 0.6337 7.2242 46 1 2.1749 -3.0717 5.0852 47 1 2.1754 -3.0718 6.8649 48 1 0.7212 -2.5594 5.9754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:01 Heat of formation + Delta-G solvation = -4.646213 kcal Electronic energy + Delta-G solvation = -28732.462450 eV Core-core repulsion = 24630.788514 eV Total energy + Delta-G solvation = -4101.673936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45008 -41.76022 -40.27436 -37.69316 -36.89754 -35.89075 -35.31169 -33.46185 -32.70892 -31.44776 -30.23862 -28.61258 -28.22796 -28.21984 -26.20805 -24.47575 -23.52351 -21.98886 -21.50812 -21.05052 -20.55781 -19.87688 -19.05609 -18.51525 -17.76582 -17.16358 -16.98441 -16.59706 -16.40704 -15.97350 -15.80502 -15.67198 -15.31540 -15.08579 -14.89840 -14.67323 -14.51940 -14.33919 -14.06651 -13.66939 -13.50329 -13.32801 -13.24080 -13.07681 -13.01267 -12.85522 -12.70170 -12.56692 -12.51740 -12.21268 -12.13638 -12.01793 -11.79488 -11.59951 -11.23755 -11.15914 -11.05561 -10.85862 -10.63738 -10.16073 -9.47935 -8.53489 -8.36320 -6.46647 0.92706 1.13832 1.34728 1.37538 1.41140 1.48692 1.78947 2.19978 2.28663 2.30079 2.70502 2.85526 2.96087 3.52407 3.85801 3.97282 3.99235 4.07125 4.12141 4.16760 4.34170 4.64837 4.66264 4.71675 4.72179 4.74883 4.84887 4.86651 4.91875 4.93672 4.95648 5.01701 5.03203 5.07129 5.24225 5.27336 5.30854 5.34678 5.39190 5.55499 5.55759 5.64654 6.03222 6.29168 6.53119 6.55816 6.63837 6.68877 7.06523 7.16403 7.35136 7.40496 8.81299 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.001890 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.807642 B =14812.203934 C =15423.589672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.137 0.863 4 N -0.718 5.718 5 C 0.312 3.688 6 C -0.317 4.317 7 C 0.068 3.932 8 N -0.358 5.358 9 C 0.242 3.758 10 C -0.545 4.545 11 H 0.018 0.982 12 C 0.007 3.993 13 N -0.947 5.947 14 Si 0.962 3.038 15 H -0.269 1.269 16 H -0.224 1.224 17 H -0.277 1.277 18 N -0.400 5.400 19 C 0.518 3.482 20 O -0.519 6.519 21 N -0.666 5.666 22 C 0.687 3.313 23 O -0.577 6.577 24 N -0.709 5.709 25 C 0.181 3.819 26 C -0.166 4.166 27 C -0.145 4.145 28 C -0.164 4.164 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.395 0.605 33 H 0.183 0.817 34 H 0.209 0.791 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.271 0.729 38 H 0.436 0.564 39 H 0.419 0.581 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.735 12.205 29.567 37.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.154 0.846 4 N -0.361 5.361 5 C 0.054 3.946 6 C -0.349 4.349 7 C -0.081 4.081 8 N -0.138 5.138 9 C 0.122 3.878 10 C -0.583 4.583 11 H 0.037 0.963 12 C -0.191 4.191 13 N -0.586 5.586 14 Si 0.782 3.218 15 H -0.194 1.194 16 H -0.147 1.147 17 H -0.203 1.203 18 N -0.232 5.232 19 C 0.304 3.696 20 O -0.389 6.389 21 N -0.335 5.335 22 C 0.387 3.613 23 O -0.452 6.452 24 N -0.368 5.368 25 C 0.095 3.905 26 C -0.224 4.224 27 C -0.202 4.202 28 C -0.222 4.222 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.230 0.770 33 H 0.200 0.800 34 H 0.225 0.775 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.276 0.724 39 H 0.257 0.743 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.139 9.789 28.634 35.282 hybrid contribution 0.128 0.202 -0.465 0.523 sum -18.011 9.992 28.170 34.896 Atomic orbital electron populations 1.22302 0.90474 1.03285 1.05597 1.20824 0.96887 0.97308 0.79972 0.84580 1.43376 1.76292 1.11956 1.04440 1.19490 0.96128 0.92146 0.86804 1.21236 1.21598 0.94389 0.97686 1.23210 0.97458 0.93244 0.94153 1.48373 1.49693 1.06293 1.09440 1.19742 0.94135 0.99391 0.74518 1.21296 0.99149 1.44555 0.93348 0.96324 1.26045 0.95848 0.93755 1.03424 1.70083 1.15716 1.45891 1.26934 0.85533 0.78901 0.80425 0.76919 1.19408 1.14689 1.20255 1.77432 1.32231 1.15023 0.98523 1.21444 0.78872 0.84116 0.85178 1.90855 1.35203 1.26440 1.86450 1.43806 1.52151 1.32742 1.04756 1.16468 0.80369 0.82846 0.81573 1.91027 1.40791 1.27527 1.85850 1.45314 1.55550 1.33366 1.02563 1.20383 0.93508 0.92422 0.84185 1.22242 0.95437 1.02290 1.02405 1.22031 1.02521 1.01060 0.94594 1.22225 1.01409 0.96167 1.02421 0.90013 0.93211 0.86840 0.76980 0.80017 0.77453 0.89846 0.94585 0.91990 0.72387 0.74316 0.91906 0.90449 0.94320 0.90317 0.89774 0.90488 0.94243 0.90496 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.40 71.98 0.68 -1.25 16 2 C 0.16 3.14 2.98 44.25 0.13 3.27 16 3 H 0.14 1.93 7.14 -2.39 -0.02 1.91 16 4 N -0.72 -23.34 5.16 -326.96 -1.69 -25.03 16 5 C 0.31 11.92 8.14 133.39 1.09 13.01 16 6 C -0.32 -9.45 9.92 22.11 0.22 -9.23 16 7 C 0.07 2.25 11.44 83.52 0.96 3.20 16 8 N -0.36 -16.16 3.66 -351.85 -1.29 -17.45 16 9 C 0.24 11.59 5.33 85.63 0.46 12.04 16 10 C -0.55 -33.07 9.79 25.60 0.25 -32.82 16 11 H 0.02 1.33 8.06 -2.91 -0.02 1.30 16 12 C 0.01 0.43 5.47 84.65 0.46 0.89 16 13 N -0.95 -61.05 13.96 21.45 0.30 -60.76 16 14 Si 0.96 42.21 27.47 68.60 1.88 44.10 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 16 H -0.22 -8.32 6.54 99.48 0.65 -7.67 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 18 N -0.40 -19.66 12.43 -54.55 -0.68 -20.33 16 19 C 0.52 12.47 7.16 87.66 0.63 13.10 16 20 O -0.52 -19.64 14.24 19.87 0.28 -19.36 16 21 N -0.67 -9.67 5.13 -440.53 -2.26 -11.93 16 22 C 0.69 14.04 7.92 179.06 1.42 15.46 16 23 O -0.58 -19.18 10.95 18.93 0.21 -18.97 16 24 N -0.71 -7.43 5.11 -438.06 -2.24 -9.67 16 25 C 0.18 2.09 1.06 3.61 0.00 2.09 16 26 C -0.17 -2.65 8.40 71.98 0.60 -2.04 16 27 C -0.14 -0.50 8.59 71.98 0.62 0.12 16 28 C -0.16 -2.50 8.40 71.98 0.60 -1.89 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.11 0.27 7.56 -2.39 -0.02 0.25 16 32 H 0.40 14.99 7.92 -92.71 -0.73 14.25 16 33 H 0.18 3.44 7.45 -2.91 -0.02 3.42 16 34 H 0.21 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.08 3.39 7.12 -2.39 -0.02 3.38 16 36 H 0.04 1.69 7.57 -2.39 -0.02 1.68 16 37 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 38 H 0.44 1.00 8.13 -92.71 -0.75 0.24 16 39 H 0.42 0.60 8.49 -92.71 -0.79 -0.18 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.04 0.98 6.17 -2.39 -0.01 0.96 16 43 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.04 0.96 6.16 -2.39 -0.01 0.95 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -100.66 394.27 1.31 -99.35 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -1.32 Total: 24.12 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 8.12 Total: 15.94 kcal Atomic # 7 Polarization: -137.31 SS G_CDS: -7.85 Total: -145.17 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: 0.49 Total: -38.33 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.10 kcal Total: -100.66 1.31 -99.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.701 kcal (2) G-P(sol) polarization free energy of solvation -100.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds