Wall clock time and date at job start Tue Mar 31 2020 20:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47119 * 2 1 4 4 N 1.46501 * 109.47347 * 120.00578 * 2 1 3 5 5 C 1.39988 * 119.99747 * 275.00115 * 4 2 1 6 6 C 1.40432 * 125.97374 * 0.02562 * 5 4 2 7 7 C 1.35251 * 107.86019 * 179.73886 * 6 5 4 8 8 N 1.34962 * 107.86128 * 0.42675 * 7 6 5 9 9 C 1.46500 * 125.97410 * 179.83595 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.71196 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 N 1.31219 * 125.97677 * 180.02562 * 5 4 2 19 19 C 1.50703 * 109.47122 * 240.00693 * 2 1 3 20 20 O 1.21239 * 119.99585 * 239.99687 * 19 2 1 21 21 N 1.34772 * 120.00270 * 59.99329 * 19 2 1 22 22 C 1.34780 * 120.00125 * 179.97438 * 21 19 2 23 23 O 1.21533 * 119.99835 * 0.02562 * 22 21 19 24 24 N 1.34772 * 120.00125 * 180.02562 * 22 21 19 25 25 C 1.46504 * 120.00248 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.46969 * 60.00360 * 25 24 22 27 27 C 1.53001 * 109.46970 * 180.02562 * 25 24 22 28 28 C 1.52990 * 109.46955 * 300.00514 * 25 24 22 29 29 H 1.08995 * 109.47327 * 60.00088 * 1 2 3 30 30 H 1.09011 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47575 * 299.99142 * 1 2 3 32 32 H 0.96999 * 120.00325 * 95.00228 * 4 2 1 33 33 H 1.07998 * 126.07497 * 0.02562 * 6 5 4 34 34 H 1.08000 * 126.07179 * 180.26370 * 7 6 5 35 35 H 1.09004 * 109.47078 * 4.71958 * 9 8 7 36 36 H 1.08993 * 109.47364 * 244.71729 * 9 8 7 37 37 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 38 38 H 0.96998 * 120.00014 * 0.02562 * 21 19 2 39 39 H 0.97007 * 119.99812 * 0.02562 * 24 22 21 40 40 H 1.09005 * 109.46934 * 59.99359 * 26 25 24 41 41 H 1.08996 * 109.47143 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.47120 * 300.00533 * 26 25 24 43 43 H 1.08999 * 109.47006 * 60.00513 * 27 25 24 44 44 H 1.08996 * 109.46647 * 180.02562 * 27 25 24 45 45 H 1.09003 * 109.47060 * 299.99827 * 27 25 24 46 46 H 1.08999 * 109.47621 * 59.99760 * 28 25 24 47 47 H 1.09004 * 109.47360 * 179.97438 * 28 25 24 48 48 H 1.08999 * 109.47566 * 299.99820 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1520 0.0075 2.4020 6 6 1.8555 1.3649 2.6065 7 6 2.1116 1.6547 3.9025 8 7 2.5623 0.5300 4.4970 9 6 2.9612 0.3990 5.9006 10 6 2.1765 -0.7153 6.5439 11 1 1.4534 -1.2706 5.9650 12 6 2.3818 -1.0258 7.8714 13 7 3.2662 -0.3531 8.5750 14 14 1.4097 -2.4074 8.6687 15 1 1.8182 -2.5441 10.0899 16 1 -0.0408 -2.0967 8.5982 17 1 1.6788 -3.6796 7.9517 18 7 2.5763 -0.4917 3.5389 19 6 2.0323 -0.7103 -1.2306 20 8 2.7294 -1.6960 -1.1194 21 7 1.7066 -0.2498 -2.4546 22 6 2.1564 -0.8848 -3.5551 23 8 2.8552 -1.8728 -3.4437 24 7 1.8311 -0.4240 -4.7792 25 6 2.3195 -1.1145 -5.9755 26 6 1.8090 -2.5568 -5.9759 27 6 1.8104 -0.3924 -7.2246 28 6 3.8494 -1.1150 -5.9751 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2491 -1.6319 1.1525 33 1 1.4841 2.0538 1.8624 34 1 1.9813 2.6162 4.3769 35 1 2.7605 1.3338 6.4241 36 1 4.0259 0.1728 5.9561 37 1 3.7712 0.3642 8.1610 38 1 1.1492 0.5390 -2.5436 39 1 1.2736 0.3649 -4.8681 40 1 0.7189 -2.5564 -5.9760 41 1 2.1727 -3.0707 -6.8657 42 1 2.1719 -3.0709 -5.0859 43 1 2.1744 0.6350 -7.2241 44 1 2.1733 -0.9064 -8.1146 45 1 0.7203 -0.3917 -7.2250 46 1 4.2124 -1.6291 -5.0852 47 1 4.2128 -1.6291 -6.8649 48 1 4.2131 -0.0875 -5.9748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:05 Heat of formation + Delta-G solvation = 17.897931 kcal Electronic energy + Delta-G solvation = -28723.699880 eV Core-core repulsion = 24623.003531 eV Total energy + Delta-G solvation = -4100.696349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60769 -40.34457 -39.42293 -36.95039 -35.75601 -34.95204 -33.77834 -32.23499 -31.46768 -29.81383 -28.87731 -27.85544 -27.61123 -26.14742 -25.30354 -23.12283 -22.61246 -20.84529 -20.57110 -20.06704 -19.56684 -19.06781 -17.51532 -17.16915 -16.42966 -16.20569 -15.91263 -15.83702 -15.06908 -14.92821 -14.69229 -14.32246 -14.07122 -13.93653 -13.88577 -13.74290 -13.18456 -13.15301 -12.90606 -12.60108 -12.52735 -12.51394 -12.42453 -12.11456 -12.03956 -11.82182 -11.67992 -11.59706 -11.57915 -11.09714 -10.78581 -10.74132 -10.33717 -10.12843 -10.02206 -9.69786 -9.68147 -9.53687 -8.86695 -8.52901 -8.02185 -7.13890 -6.52541 -4.26267 1.82557 1.92234 2.80659 2.99495 3.06080 3.40981 3.44510 3.48016 3.62618 3.65589 4.06778 4.19665 4.31310 4.45852 4.45866 4.59880 4.79545 4.91096 5.04659 5.17184 5.20721 5.22911 5.25632 5.36989 5.39859 5.41826 5.50347 5.54012 5.57032 5.75634 5.82315 5.88128 5.97472 6.02240 6.12223 6.14904 6.21003 6.39109 6.54135 6.75102 6.97586 7.16295 7.54313 7.72710 7.75472 7.91526 8.07994 8.12170 8.41483 8.64464 8.80156 9.41756 10.84558 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027092 B = 0.001847 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.258682 B =15155.690820 C =15479.723065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.160 3.840 3 H 0.108 0.892 4 N -0.712 5.712 5 C 0.310 3.690 6 C -0.334 4.334 7 C 0.067 3.933 8 N -0.323 5.323 9 C 0.250 3.750 10 C -0.605 4.605 11 H 0.063 0.937 12 C 0.022 3.978 13 N -0.906 5.906 14 Si 1.076 2.924 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.285 1.285 18 N -0.324 5.324 19 C 0.514 3.486 20 O -0.455 6.455 21 N -0.690 5.690 22 C 0.695 3.305 23 O -0.523 6.523 24 N -0.733 5.733 25 C 0.184 3.816 26 C -0.167 4.167 27 C -0.154 4.154 28 C -0.167 4.167 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.132 0.868 34 H 0.163 0.837 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.409 0.591 39 H 0.397 0.603 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 7.267 -32.044 33.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.049 3.951 3 H 0.125 0.875 4 N -0.356 5.356 5 C 0.054 3.946 6 C -0.367 4.367 7 C -0.085 4.085 8 N -0.102 5.102 9 C 0.132 3.868 10 C -0.643 4.643 11 H 0.082 0.918 12 C -0.183 4.183 13 N -0.542 5.542 14 Si 0.904 3.096 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.211 1.211 18 N -0.155 5.155 19 C 0.299 3.701 20 O -0.321 6.321 21 N -0.357 5.357 22 C 0.395 3.605 23 O -0.394 6.394 24 N -0.391 5.391 25 C 0.099 3.901 26 C -0.225 4.225 27 C -0.212 4.212 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.244 0.756 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.087 3.971 -29.705 30.581 hybrid contribution -0.648 2.300 -2.066 3.159 sum -6.734 6.271 -31.772 33.077 Atomic orbital electron populations 1.22330 0.93512 1.03557 1.03243 1.20412 0.94958 0.97020 0.82722 0.87465 1.42995 1.76595 1.12249 1.03785 1.19055 0.98113 0.90583 0.86875 1.20714 1.23349 0.95437 0.97195 1.22342 0.99515 0.93173 0.93433 1.48755 1.47029 1.04590 1.09871 1.19697 0.96682 0.99074 0.71367 1.22109 1.25269 1.18797 0.98129 0.91834 1.25914 0.97215 1.01207 0.93932 1.70852 1.22673 1.21299 1.39378 0.83424 0.75231 0.74949 0.76040 1.20582 1.21289 1.21123 1.77522 1.29562 1.12368 0.96052 1.21105 0.80130 0.85089 0.83795 1.90853 1.32240 1.23433 1.85561 1.44180 1.52699 1.32380 1.06439 1.16147 0.80761 0.83289 0.80297 1.91024 1.38432 1.24939 1.85028 1.45483 1.56407 1.33096 1.04075 1.20253 0.94492 0.92526 0.82859 1.22267 1.00910 0.95403 1.03891 1.22085 1.01643 1.00819 0.96627 1.22269 0.94024 1.02316 1.03896 0.91769 0.91589 0.89974 0.75325 0.84995 0.81949 0.93888 0.94922 0.92340 0.75592 0.76933 0.92701 0.91706 0.90053 0.91827 0.90547 0.91839 0.90048 0.91704 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.40 37.16 0.35 -1.05 16 2 C 0.16 1.74 2.98 -69.08 -0.21 1.54 16 3 H 0.11 0.97 7.14 -51.93 -0.37 0.60 16 4 N -0.71 -11.44 5.16 -54.70 -0.28 -11.72 16 5 C 0.31 6.02 8.14 -154.55 -1.26 4.76 16 6 C -0.33 -5.65 9.92 -39.82 -0.39 -6.05 16 7 C 0.07 1.26 11.44 -17.24 -0.20 1.06 16 8 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 9 C 0.25 6.44 5.57 -5.19 -0.03 6.41 16 10 C -0.60 -17.37 9.24 -34.44 -0.32 -17.69 16 11 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 12 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 13 N -0.91 -26.81 13.65 55.43 0.76 -26.06 16 14 Si 1.08 25.51 29.90 -169.99 -5.08 20.42 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 N -0.32 -7.76 12.42 31.41 0.39 -7.37 16 19 C 0.51 6.15 7.16 -10.99 -0.08 6.08 16 20 O -0.45 -7.88 14.24 -18.21 -0.26 -8.14 16 21 N -0.69 -5.48 5.13 -15.78 -0.08 -5.56 16 22 C 0.69 7.03 7.92 -86.92 -0.69 6.34 16 23 O -0.52 -7.94 10.95 -18.47 -0.20 -8.14 16 24 N -0.73 -4.40 5.11 -52.43 -0.27 -4.67 16 25 C 0.18 1.15 1.06 -131.82 -0.14 1.01 16 26 C -0.17 -1.26 8.40 37.16 0.31 -0.94 16 27 C -0.15 -0.51 8.59 37.16 0.32 -0.19 16 28 C -0.17 -1.28 8.40 37.15 0.31 -0.97 16 29 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.41 7.19 7.92 -40.82 -0.32 6.86 16 33 H 0.13 1.70 7.45 -52.49 -0.39 1.31 16 34 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 35 H 0.04 1.06 7.94 -51.93 -0.41 0.65 16 36 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 37 H 0.27 7.70 7.22 -40.82 -0.29 7.41 16 38 H 0.41 1.25 8.13 -40.82 -0.33 0.92 16 39 H 0.40 0.97 8.49 -40.82 -0.35 0.63 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 43 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.91 6.16 -51.93 -0.32 0.59 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -38.77 396.56 -8.75 -47.52 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.35 Total: 4.69 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.12 Total: 0.84 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.29 Total: -63.17 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.46 Total: -16.27 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.77 -8.75 -47.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.418 kcal (2) G-P(sol) polarization free energy of solvation -38.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds