Wall clock time and date at job start Tue Mar 31 2020 20:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47119 * 2 1 4 4 N 1.46501 * 109.47347 * 120.00578 * 2 1 3 5 5 C 1.39988 * 119.99747 * 275.00115 * 4 2 1 6 6 C 1.40432 * 125.97374 * 0.02562 * 5 4 2 7 7 C 1.35251 * 107.86019 * 179.73886 * 6 5 4 8 8 N 1.34962 * 107.86128 * 0.42675 * 7 6 5 9 9 C 1.46500 * 125.97410 * 179.83595 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.71196 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 N 1.31219 * 125.97677 * 180.02562 * 5 4 2 19 19 C 1.50703 * 109.47122 * 240.00693 * 2 1 3 20 20 O 1.21239 * 119.99585 * 239.99687 * 19 2 1 21 21 N 1.34772 * 120.00270 * 59.99329 * 19 2 1 22 22 C 1.34780 * 120.00125 * 179.97438 * 21 19 2 23 23 O 1.21533 * 119.99835 * 0.02562 * 22 21 19 24 24 N 1.34772 * 120.00125 * 180.02562 * 22 21 19 25 25 C 1.46504 * 120.00248 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.46969 * 60.00360 * 25 24 22 27 27 C 1.53001 * 109.46970 * 180.02562 * 25 24 22 28 28 C 1.52990 * 109.46955 * 300.00514 * 25 24 22 29 29 H 1.08995 * 109.47327 * 60.00088 * 1 2 3 30 30 H 1.09011 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47575 * 299.99142 * 1 2 3 32 32 H 0.96999 * 120.00325 * 95.00228 * 4 2 1 33 33 H 1.07998 * 126.07497 * 0.02562 * 6 5 4 34 34 H 1.08000 * 126.07179 * 180.26370 * 7 6 5 35 35 H 1.09004 * 109.47078 * 4.71958 * 9 8 7 36 36 H 1.08993 * 109.47364 * 244.71729 * 9 8 7 37 37 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 38 38 H 0.96998 * 120.00014 * 0.02562 * 21 19 2 39 39 H 0.97007 * 119.99812 * 0.02562 * 24 22 21 40 40 H 1.09005 * 109.46934 * 59.99359 * 26 25 24 41 41 H 1.08996 * 109.47143 * 180.02562 * 26 25 24 42 42 H 1.09000 * 109.47120 * 300.00533 * 26 25 24 43 43 H 1.08999 * 109.47006 * 60.00513 * 27 25 24 44 44 H 1.08996 * 109.46647 * 180.02562 * 27 25 24 45 45 H 1.09003 * 109.47060 * 299.99827 * 27 25 24 46 46 H 1.08999 * 109.47621 * 59.99760 * 28 25 24 47 47 H 1.09004 * 109.47360 * 179.97438 * 28 25 24 48 48 H 1.08999 * 109.47566 * 299.99820 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1520 0.0075 2.4020 6 6 1.8555 1.3649 2.6065 7 6 2.1116 1.6547 3.9025 8 7 2.5623 0.5300 4.4970 9 6 2.9612 0.3990 5.9006 10 6 2.1765 -0.7153 6.5439 11 1 1.4534 -1.2706 5.9650 12 6 2.3818 -1.0258 7.8714 13 7 3.2662 -0.3531 8.5750 14 14 1.4097 -2.4074 8.6687 15 1 1.8182 -2.5441 10.0899 16 1 -0.0408 -2.0967 8.5982 17 1 1.6788 -3.6796 7.9517 18 7 2.5763 -0.4917 3.5389 19 6 2.0323 -0.7103 -1.2306 20 8 2.7294 -1.6960 -1.1194 21 7 1.7066 -0.2498 -2.4546 22 6 2.1564 -0.8848 -3.5551 23 8 2.8552 -1.8728 -3.4437 24 7 1.8311 -0.4240 -4.7792 25 6 2.3195 -1.1145 -5.9755 26 6 1.8090 -2.5568 -5.9759 27 6 1.8104 -0.3924 -7.2246 28 6 3.8494 -1.1150 -5.9751 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 2.2491 -1.6319 1.1525 33 1 1.4841 2.0538 1.8624 34 1 1.9813 2.6162 4.3769 35 1 2.7605 1.3338 6.4241 36 1 4.0259 0.1728 5.9561 37 1 3.7712 0.3642 8.1610 38 1 1.1492 0.5390 -2.5436 39 1 1.2736 0.3649 -4.8681 40 1 0.7189 -2.5564 -5.9760 41 1 2.1727 -3.0707 -6.8657 42 1 2.1719 -3.0709 -5.0859 43 1 2.1744 0.6350 -7.2241 44 1 2.1733 -0.9064 -8.1146 45 1 0.7203 -0.3917 -7.2250 46 1 4.2124 -1.6291 -5.0852 47 1 4.2128 -1.6291 -6.8649 48 1 4.2131 -0.0875 -5.9748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:04 Heat of formation + Delta-G solvation = -11.333506 kcal Electronic energy + Delta-G solvation = -28724.967451 eV Core-core repulsion = 24623.003531 eV Total energy + Delta-G solvation = -4101.963919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46537 -41.83140 -40.28845 -37.71330 -36.96053 -35.95166 -35.69223 -33.28265 -32.61926 -31.27620 -30.23461 -28.23341 -28.22349 -27.93907 -26.22416 -24.96758 -23.58055 -22.15107 -21.56277 -21.13162 -20.56989 -19.88607 -19.20543 -18.57398 -17.67622 -17.16935 -16.98888 -16.56156 -16.34294 -15.84630 -15.79040 -15.60320 -15.46253 -15.16197 -15.00984 -14.72515 -14.52465 -14.40755 -13.79823 -13.63790 -13.58743 -13.31034 -13.23839 -13.14213 -13.07994 -13.01755 -12.68187 -12.59509 -12.56976 -12.22308 -12.14156 -11.96360 -11.61177 -11.54636 -11.24411 -11.22970 -10.85104 -10.68753 -10.63492 -10.16711 -9.56458 -8.86344 -8.54086 -6.54000 0.90917 1.12494 1.29186 1.49200 1.56405 1.70384 1.78469 2.17951 2.22963 2.47292 2.65148 2.83474 3.01681 3.50344 3.85168 3.92380 3.98777 4.01500 4.11651 4.12495 4.26698 4.60687 4.65461 4.67457 4.71383 4.74312 4.79918 4.85951 4.86279 4.88550 4.91457 5.00360 5.01184 5.02464 5.23437 5.29816 5.31407 5.38735 5.45986 5.55128 5.59878 5.65241 5.94631 6.23211 6.34608 6.52262 6.53913 6.63971 7.04733 7.20405 7.29524 7.39181 8.58939 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027092 B = 0.001847 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.258682 B =15155.690820 C =15479.723065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 H 0.139 0.861 4 N -0.716 5.716 5 C 0.314 3.686 6 C -0.313 4.313 7 C 0.062 3.938 8 N -0.356 5.356 9 C 0.262 3.738 10 C -0.618 4.618 11 H 0.041 0.959 12 C -0.021 4.021 13 N -0.924 5.924 14 Si 1.119 2.881 15 H -0.273 1.273 16 H -0.267 1.267 17 H -0.282 1.282 18 N -0.397 5.397 19 C 0.520 3.480 20 O -0.517 6.517 21 N -0.666 5.666 22 C 0.688 3.312 23 O -0.576 6.576 24 N -0.710 5.710 25 C 0.181 3.819 26 C -0.164 4.164 27 C -0.145 4.145 28 C -0.165 4.165 29 H 0.114 0.886 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.397 0.603 33 H 0.184 0.816 34 H 0.200 0.800 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.260 0.740 38 H 0.435 0.565 39 H 0.418 0.582 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 10.040 -34.861 37.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.156 0.844 4 N -0.358 5.358 5 C 0.057 3.943 6 C -0.345 4.345 7 C -0.086 4.086 8 N -0.137 5.137 9 C 0.142 3.858 10 C -0.656 4.656 11 H 0.060 0.940 12 C -0.221 4.221 13 N -0.560 5.560 14 Si 0.940 3.060 15 H -0.198 1.198 16 H -0.192 1.192 17 H -0.207 1.207 18 N -0.229 5.229 19 C 0.306 3.694 20 O -0.388 6.388 21 N -0.335 5.335 22 C 0.388 3.612 23 O -0.451 6.451 24 N -0.368 5.368 25 C 0.095 3.905 26 C -0.223 4.223 27 C -0.202 4.202 28 C -0.223 4.223 29 H 0.133 0.867 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.232 0.768 33 H 0.201 0.799 34 H 0.216 0.784 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.276 0.724 39 H 0.257 0.743 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.771 6.875 -32.627 34.478 hybrid contribution 0.166 1.471 -1.424 2.054 sum -8.606 8.346 -34.051 36.100 Atomic orbital electron populations 1.22315 0.90883 1.03248 1.05474 1.20813 0.96636 0.97456 0.80072 0.84357 1.43355 1.76180 1.11953 1.04345 1.19450 0.96288 0.91863 0.86692 1.21210 1.21287 0.94654 0.97389 1.23145 0.98071 0.93275 0.94154 1.48429 1.50086 1.06106 1.09053 1.19272 0.94684 0.98426 0.73460 1.22301 1.25214 1.19704 0.98424 0.94014 1.27270 0.97411 1.02707 0.94690 1.70945 1.23565 1.21912 1.39598 0.82890 0.75101 0.72487 0.75500 1.19802 1.19241 1.20748 1.77388 1.33016 1.14490 0.98033 1.21354 0.78883 0.84084 0.85076 1.90848 1.35213 1.26275 1.86440 1.43809 1.52167 1.32738 1.04773 1.16450 0.80376 0.82833 0.81534 1.91022 1.40787 1.27465 1.85839 1.45326 1.55607 1.33298 1.02594 1.20383 0.93599 0.92373 0.84142 1.22229 1.01368 0.96206 1.02449 1.22034 1.02494 1.01072 0.94646 1.22233 0.95316 1.02317 1.02444 0.86709 0.93269 0.90447 0.76804 0.79892 0.78354 0.92815 0.97640 0.93051 0.72414 0.74337 0.91783 0.90481 0.94181 0.90468 0.89769 0.90406 0.94214 0.90461 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.40 71.98 0.68 -1.44 16 2 C 0.16 3.07 2.98 44.24 0.13 3.20 16 3 H 0.14 1.84 7.14 -2.39 -0.02 1.83 16 4 N -0.72 -22.81 5.16 -326.97 -1.69 -24.50 16 5 C 0.31 12.04 8.14 133.39 1.09 13.13 16 6 C -0.31 -9.67 9.92 22.12 0.22 -9.45 16 7 C 0.06 2.22 11.44 83.52 0.96 3.18 16 8 N -0.36 -16.96 3.67 -351.83 -1.29 -18.25 16 9 C 0.26 13.95 5.57 85.64 0.48 14.43 16 10 C -0.62 -36.65 9.24 25.60 0.24 -36.41 16 11 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 12 C -0.02 -1.24 5.46 84.65 0.46 -0.78 16 13 N -0.92 -55.62 13.65 21.45 0.29 -55.33 16 14 Si 1.12 51.77 29.90 68.60 2.05 53.82 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 N -0.40 -19.62 12.42 -54.54 -0.68 -20.30 16 19 C 0.52 11.95 7.16 87.66 0.63 12.58 16 20 O -0.52 -18.70 14.24 19.86 0.28 -18.42 16 21 N -0.67 -9.10 5.13 -440.53 -2.26 -11.36 16 22 C 0.69 13.35 7.92 179.05 1.42 14.77 16 23 O -0.58 -18.39 10.95 18.94 0.21 -18.18 16 24 N -0.71 -6.89 5.11 -438.08 -2.24 -9.13 16 25 C 0.18 1.94 1.06 3.60 0.00 1.95 16 26 C -0.16 -2.39 8.40 71.98 0.60 -1.79 16 27 C -0.14 -0.42 8.59 71.98 0.62 0.20 16 28 C -0.16 -2.44 8.40 71.98 0.60 -1.84 16 29 H 0.11 0.35 7.56 -2.39 -0.02 0.33 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.40 14.60 7.92 -92.71 -0.73 13.87 16 33 H 0.18 3.62 7.45 -2.91 -0.02 3.60 16 34 H 0.20 5.33 8.06 -2.91 -0.02 5.31 16 35 H 0.05 2.70 7.94 -2.39 -0.02 2.68 16 36 H 0.01 0.33 8.00 -2.39 -0.02 0.31 16 37 H 0.26 15.48 7.22 -92.71 -0.67 14.81 16 38 H 0.44 0.75 8.13 -92.71 -0.75 0.00 16 39 H 0.42 0.36 8.49 -92.70 -0.79 -0.42 16 40 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.04 0.94 6.17 -2.39 -0.01 0.93 16 43 H 0.08 0.06 8.14 -2.39 -0.02 0.05 16 44 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.04 0.95 6.16 -2.39 -0.01 0.93 16 47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -93.62 396.56 1.63 -91.98 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -1.17 Total: 17.94 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 8.12 Total: 11.72 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -7.86 Total: -138.86 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: 0.49 Total: -36.60 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.82 kcal Total: -93.62 1.63 -91.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.651 kcal (2) G-P(sol) polarization free energy of solvation -93.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds