Wall clock time and date at job start Tue Mar 31 2020 20:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47293 * 2 1 4 4 C 1.53007 * 109.47084 * 119.99232 * 2 1 3 5 5 N 1.46500 * 109.47319 * 175.51218 * 4 2 1 6 6 C 1.34766 * 120.00083 * 175.21318 * 5 4 2 7 7 O 1.21594 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00404 * 179.97438 * 6 5 4 9 9 C 1.40193 * 120.00452 * 180.27709 * 8 6 5 10 10 C 1.40401 * 125.96986 * 359.44287 * 9 8 6 11 11 C 1.35249 * 107.86464 * 179.88768 * 10 9 8 12 12 N 1.34954 * 107.85800 * 0.37342 * 11 10 9 13 13 C 1.46508 * 125.97578 * 179.73217 * 12 11 10 14 14 C 1.50700 * 109.47139 * 125.01329 * 13 12 11 15 15 H 1.08001 * 120.00089 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99776 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99972 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47496 * 59.99763 * 18 16 14 20 20 H 1.48496 * 109.47291 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47208 * 299.99866 * 18 16 14 22 22 N 1.31208 * 125.97490 * 179.75360 * 9 8 6 23 23 N 1.46894 * 109.47588 * 239.99331 * 2 1 3 24 24 C 1.47013 * 110.99860 * 71.42084 * 23 2 1 25 25 C 1.53095 * 109.26038 * 177.60595 * 24 23 2 26 26 O 1.43021 * 109.25708 * 56.85141 * 25 24 23 27 27 C 1.43014 * 113.73727 * 301.32973 * 26 25 24 28 28 C 1.47008 * 111.00316 * 307.78732 * 23 2 1 29 29 H 1.09005 * 109.46825 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47581 * 300.00260 * 1 2 3 31 31 H 1.08998 * 109.47147 * 60.00539 * 1 2 3 32 32 H 1.09008 * 109.46919 * 55.51503 * 4 2 1 33 33 H 1.09000 * 109.47246 * 295.51875 * 4 2 1 34 34 H 0.97004 * 119.99673 * 355.21558 * 5 4 2 35 35 H 0.97004 * 119.99352 * 0.02562 * 8 6 5 36 36 H 1.07997 * 126.06797 * 0.02562 * 10 9 8 37 37 H 1.08003 * 126.06458 * 180.11021 * 11 10 9 38 38 H 1.09004 * 109.46607 * 245.00984 * 13 12 11 39 39 H 1.08996 * 109.47159 * 5.01022 * 13 12 11 40 40 H 0.97000 * 119.99715 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.50972 * 297.54551 * 24 23 2 42 42 H 1.09007 * 109.50528 * 57.67393 * 24 23 2 43 43 H 1.08995 * 109.50950 * 296.91899 * 25 24 23 44 44 H 1.08997 * 109.51036 * 176.78187 * 25 24 23 45 45 H 1.08999 * 109.50461 * 298.73515 * 27 26 25 46 46 H 1.08996 * 109.54509 * 178.62783 * 27 26 25 47 47 H 1.08996 * 109.51069 * 302.32621 * 28 23 2 48 48 H 1.09009 * 109.50452 * 62.45564 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5010 -0.8155 1.1966 6 6 4.1813 -1.3284 2.2408 7 8 3.5824 -1.7133 3.2266 8 7 5.5254 -1.4157 2.1922 9 6 6.2326 -1.9546 3.2760 10 6 5.6720 -2.4288 4.4727 11 6 6.6815 -2.8672 5.2588 12 7 7.8391 -2.6721 4.5930 13 6 9.1799 -3.0015 5.0830 14 6 9.8721 -3.8975 4.0885 15 1 9.3640 -4.1925 3.1822 16 6 11.1537 -4.3416 4.3360 17 7 11.7722 -3.9829 5.4398 18 14 12.0115 -5.4528 3.1037 19 1 12.1201 -4.7534 1.7982 20 1 13.3706 -5.7867 3.6003 21 1 11.2260 -6.7014 2.9324 22 7 7.5345 -2.0988 3.3517 23 7 2.0197 -0.6926 -1.1993 24 6 1.7831 0.1127 -2.4062 25 6 2.3607 -0.6173 -3.6217 26 8 1.7723 -1.9176 -3.7144 27 6 1.9839 -2.7292 -2.5561 28 6 1.4026 -2.0205 -1.3298 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6125 -1.7230 1.2906 33 1 1.7437 -0.1629 2.1375 34 1 3.9787 -0.5087 0.4101 35 1 6.0031 -1.1089 1.4056 36 1 4.6209 -2.4433 4.7206 37 1 6.5797 -3.2934 6.2459 38 1 9.7561 -2.0848 5.2087 39 1 9.1005 -3.5151 6.0411 40 1 12.6740 -4.2950 5.6137 41 1 0.7114 0.2567 -2.5435 42 1 2.2703 1.0819 -2.2984 43 1 3.4405 -0.7137 -3.5091 44 1 2.1374 -0.0515 -4.5261 45 1 3.0528 -2.8870 -2.4126 46 1 1.4888 -3.6910 -2.6893 47 1 1.6119 -2.6086 -0.4363 48 1 0.3247 -1.9106 -1.4499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118894319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:41 Heat of formation + Delta-G solvation = 23.290232 kcal Electronic energy + Delta-G solvation = -28979.450301 eV Core-core repulsion = 24878.987779 eV Total energy + Delta-G solvation = -4100.462521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72852 -40.32615 -39.37588 -37.35795 -34.72881 -34.29780 -33.28567 -31.78541 -31.49200 -30.70455 -29.23370 -27.20897 -26.89013 -26.08868 -24.50321 -23.06725 -22.07341 -21.52879 -20.30064 -20.11663 -19.63276 -17.85055 -17.27829 -16.86137 -16.54270 -16.44184 -15.90160 -15.62595 -15.49183 -15.28417 -15.19943 -14.79860 -14.57740 -14.31709 -14.14688 -13.80698 -13.38627 -13.23800 -12.74531 -12.66685 -12.65806 -12.30379 -12.19106 -12.10387 -12.08672 -11.74616 -11.66353 -11.17667 -11.03109 -10.90175 -10.83872 -10.38615 -10.22439 -10.09439 -10.02121 -9.63380 -9.46468 -9.13526 -8.85193 -8.60049 -8.04282 -7.35438 -6.21361 -4.26288 2.46655 2.73016 3.17502 3.21790 3.27511 3.30589 3.35338 3.48235 3.70434 3.91210 4.21461 4.31632 4.38352 4.46202 4.48096 4.66377 4.69417 4.74248 4.79874 4.88447 5.07185 5.13610 5.14628 5.21571 5.24167 5.30873 5.35381 5.47654 5.54726 5.55198 5.62586 5.70208 5.86943 6.28541 6.34112 6.44773 6.48984 6.59665 6.67490 6.73534 6.92727 7.07028 7.18771 7.56604 7.72933 7.88031 8.06376 8.11863 8.68890 8.71751 8.84477 9.39076 10.87258 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.002183 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.259184 B =12822.018404 C =14220.729196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 H 0.092 0.908 4 C 0.152 3.848 5 N -0.734 5.734 6 C 0.712 3.288 7 O -0.573 6.573 8 N -0.644 5.644 9 C 0.277 3.723 10 C -0.286 4.286 11 C 0.050 3.950 12 N -0.321 5.321 13 C 0.259 3.741 14 C -0.528 4.528 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.908 3.092 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.309 5.309 23 N -0.529 5.529 24 C 0.016 3.984 25 C 0.063 3.937 26 O -0.387 6.387 27 C 0.063 3.937 28 C 0.012 3.988 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.403 0.597 35 H 0.406 0.594 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.267 0.733 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.296 9.230 -14.628 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.111 0.889 4 C 0.026 3.974 5 N -0.391 5.391 6 C 0.411 3.589 7 O -0.449 6.449 8 N -0.294 5.294 9 C 0.023 3.977 10 C -0.318 4.318 11 C -0.100 4.100 12 N -0.103 5.103 13 C 0.142 3.858 14 C -0.566 4.566 15 H 0.086 0.914 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 N -0.140 5.140 23 N -0.254 5.254 24 C -0.112 4.112 25 C -0.014 4.014 26 O -0.305 6.305 27 C -0.014 4.014 28 C -0.116 4.116 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.238 0.762 35 H 0.241 0.759 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.109 0.891 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.040 8.869 -14.277 27.717 hybrid contribution -0.423 -0.195 -0.738 0.873 sum -22.463 8.674 -15.015 28.377 Atomic orbital electron populations 1.22369 0.96011 1.03005 1.02923 1.22028 0.93795 0.98649 0.89709 0.88943 1.21185 0.79098 1.00643 0.96424 1.44817 1.07057 1.68251 1.18930 1.15650 0.80742 0.79029 0.83496 1.90860 1.67856 1.54024 1.32156 1.41380 1.04813 1.64745 1.18427 1.18791 0.90392 0.99779 0.88757 1.21509 1.00878 1.14839 0.94556 1.22548 0.86073 1.02001 0.99378 1.49041 1.07957 1.43751 1.09587 1.19716 0.73489 0.97229 0.95397 1.21228 0.99656 1.29676 1.06056 0.91368 1.24943 0.96867 0.96458 0.95831 1.69909 1.13764 1.44982 1.24776 0.86389 0.78292 0.80669 0.81150 1.19952 1.21072 1.20054 1.77323 1.10957 1.22696 1.03006 1.62382 1.57861 1.03025 1.02163 1.22815 1.00135 0.97630 0.90622 1.22663 0.97650 0.83768 0.97337 1.87994 1.77315 1.25894 1.39321 1.22681 1.00957 0.93716 0.84070 1.22884 0.97668 0.90939 1.00117 0.91652 0.91240 0.92001 0.91791 0.90703 0.76184 0.75920 0.82232 0.81600 0.93796 0.92588 0.92306 0.93608 0.89522 0.92090 0.88553 0.92049 0.88443 0.89123 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 8.40 37.16 0.31 -0.60 16 2 C 0.07 0.39 2.47 -67.71 -0.17 0.22 16 3 H 0.09 0.49 8.01 -51.93 -0.42 0.08 16 4 C 0.15 1.26 4.90 -4.04 -0.02 1.24 16 5 N -0.73 -7.36 5.42 -65.22 -0.35 -7.71 16 6 C 0.71 10.53 8.53 -86.92 -0.74 9.79 16 7 O -0.57 -10.40 13.47 5.28 0.07 -10.33 16 8 N -0.64 -10.22 5.45 -15.51 -0.08 -10.30 16 9 C 0.28 5.68 8.11 -154.37 -1.25 4.43 16 10 C -0.29 -5.84 9.61 -39.83 -0.38 -6.22 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 N -0.32 -7.60 3.67 -62.56 -0.23 -7.83 16 13 C 0.26 6.67 6.26 -5.19 -0.03 6.64 16 14 C -0.53 -14.82 9.24 -34.44 -0.32 -15.14 16 15 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 18 Si 0.91 21.51 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 23 N -0.53 -3.29 4.07 -226.33 -0.92 -4.22 16 24 C 0.02 0.09 5.40 -3.71 -0.02 0.07 16 25 C 0.06 0.39 7.01 37.21 0.26 0.65 16 26 O -0.39 -3.35 10.83 -35.23 -0.38 -3.73 16 27 C 0.06 0.46 7.01 37.21 0.26 0.72 16 28 C 0.01 0.08 4.76 -3.71 -0.02 0.06 16 29 H 0.06 0.35 6.37 -51.93 -0.33 0.02 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 6.80 -51.93 -0.35 -0.06 16 32 H 0.06 0.59 6.77 -51.92 -0.35 0.24 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 3.32 8.10 -40.82 -0.33 2.99 16 35 H 0.41 5.30 8.84 -40.82 -0.36 4.94 16 36 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 37 H 0.17 2.78 8.06 -52.48 -0.42 2.35 16 38 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.05 0.26 6.78 -51.93 -0.35 -0.09 16 42 H 0.09 0.37 8.08 -51.92 -0.42 -0.05 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.67 6.53 -51.93 -0.34 0.33 16 48 H 0.05 0.33 6.36 -51.92 -0.33 0.00 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -33.60 385.86 -9.63 -43.23 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.24 Total: 5.90 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.41 Total: 4.31 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.46 Total: -61.68 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.31 Total: -14.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.60 -9.63 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.521 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds