Wall clock time and date at job start Tue Mar 31 2020 20:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47293 * 2 1 4 4 C 1.53007 * 109.47084 * 119.99232 * 2 1 3 5 5 N 1.46500 * 109.47319 * 175.51218 * 4 2 1 6 6 C 1.34766 * 120.00083 * 175.21318 * 5 4 2 7 7 O 1.21594 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00404 * 179.97438 * 6 5 4 9 9 C 1.40193 * 120.00452 * 180.27709 * 8 6 5 10 10 C 1.40401 * 125.96986 * 359.44287 * 9 8 6 11 11 C 1.35249 * 107.86464 * 179.88768 * 10 9 8 12 12 N 1.34954 * 107.85800 * 0.37342 * 11 10 9 13 13 C 1.46508 * 125.97578 * 179.73217 * 12 11 10 14 14 C 1.50700 * 109.47139 * 125.01329 * 13 12 11 15 15 H 1.08001 * 120.00089 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99776 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99972 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47496 * 59.99763 * 18 16 14 20 20 H 1.48496 * 109.47291 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47208 * 299.99866 * 18 16 14 22 22 N 1.31208 * 125.97490 * 179.75360 * 9 8 6 23 23 N 1.46894 * 109.47588 * 239.99331 * 2 1 3 24 24 C 1.47013 * 110.99860 * 71.42084 * 23 2 1 25 25 C 1.53095 * 109.26038 * 177.60595 * 24 23 2 26 26 O 1.43021 * 109.25708 * 56.85141 * 25 24 23 27 27 C 1.43014 * 113.73727 * 301.32973 * 26 25 24 28 28 C 1.47008 * 111.00316 * 307.78732 * 23 2 1 29 29 H 1.09005 * 109.46825 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47581 * 300.00260 * 1 2 3 31 31 H 1.08998 * 109.47147 * 60.00539 * 1 2 3 32 32 H 1.09008 * 109.46919 * 55.51503 * 4 2 1 33 33 H 1.09000 * 109.47246 * 295.51875 * 4 2 1 34 34 H 0.97004 * 119.99673 * 355.21558 * 5 4 2 35 35 H 0.97004 * 119.99352 * 0.02562 * 8 6 5 36 36 H 1.07997 * 126.06797 * 0.02562 * 10 9 8 37 37 H 1.08003 * 126.06458 * 180.11021 * 11 10 9 38 38 H 1.09004 * 109.46607 * 245.00984 * 13 12 11 39 39 H 1.08996 * 109.47159 * 5.01022 * 13 12 11 40 40 H 0.97000 * 119.99715 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.50972 * 297.54551 * 24 23 2 42 42 H 1.09007 * 109.50528 * 57.67393 * 24 23 2 43 43 H 1.08995 * 109.50950 * 296.91899 * 25 24 23 44 44 H 1.08997 * 109.51036 * 176.78187 * 25 24 23 45 45 H 1.08999 * 109.50461 * 298.73515 * 27 26 25 46 46 H 1.08996 * 109.54509 * 178.62783 * 27 26 25 47 47 H 1.08996 * 109.51069 * 302.32621 * 28 23 2 48 48 H 1.09009 * 109.50452 * 62.45564 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5010 -0.8155 1.1966 6 6 4.1813 -1.3284 2.2408 7 8 3.5824 -1.7133 3.2266 8 7 5.5254 -1.4157 2.1922 9 6 6.2326 -1.9546 3.2760 10 6 5.6720 -2.4288 4.4727 11 6 6.6815 -2.8672 5.2588 12 7 7.8391 -2.6721 4.5930 13 6 9.1799 -3.0015 5.0830 14 6 9.8721 -3.8975 4.0885 15 1 9.3640 -4.1925 3.1822 16 6 11.1537 -4.3416 4.3360 17 7 11.7722 -3.9829 5.4398 18 14 12.0115 -5.4528 3.1037 19 1 12.1201 -4.7534 1.7982 20 1 13.3706 -5.7867 3.6003 21 1 11.2260 -6.7014 2.9324 22 7 7.5345 -2.0988 3.3517 23 7 2.0197 -0.6926 -1.1993 24 6 1.7831 0.1127 -2.4062 25 6 2.3607 -0.6173 -3.6217 26 8 1.7723 -1.9176 -3.7144 27 6 1.9839 -2.7292 -2.5561 28 6 1.4026 -2.0205 -1.3298 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6125 -1.7230 1.2906 33 1 1.7437 -0.1629 2.1375 34 1 3.9787 -0.5087 0.4101 35 1 6.0031 -1.1089 1.4056 36 1 4.6209 -2.4433 4.7206 37 1 6.5797 -3.2934 6.2459 38 1 9.7561 -2.0848 5.2087 39 1 9.1005 -3.5151 6.0411 40 1 12.6740 -4.2950 5.6137 41 1 0.7114 0.2567 -2.5435 42 1 2.2703 1.0819 -2.2984 43 1 3.4405 -0.7137 -3.5091 44 1 2.1374 -0.0515 -4.5261 45 1 3.0528 -2.8870 -2.4126 46 1 1.4888 -3.6910 -2.6893 47 1 1.6119 -2.6086 -0.4363 48 1 0.3247 -1.9106 -1.4499 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118894319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:40 Heat of formation + Delta-G solvation = -1.375642 kcal Electronic energy + Delta-G solvation = -28980.519893 eV Core-core repulsion = 24878.987779 eV Total energy + Delta-G solvation = -4101.532114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18477 -41.13046 -40.49914 -38.01156 -36.19163 -35.34415 -35.13481 -32.83728 -32.16350 -31.90768 -30.89564 -28.65002 -27.61342 -27.13144 -25.03971 -24.89870 -23.05662 -22.48715 -21.88106 -21.19926 -20.52385 -19.03176 -18.67308 -18.22015 -17.80919 -17.33430 -16.99624 -16.68951 -16.36906 -16.19186 -16.01672 -15.83407 -15.78536 -15.55126 -15.26486 -15.01697 -14.48954 -14.25711 -13.99843 -13.88586 -13.76735 -13.61677 -13.15981 -13.12797 -12.92421 -12.73155 -12.67871 -12.57763 -12.26432 -12.19182 -12.04424 -11.67399 -11.60474 -11.42217 -11.37473 -11.08139 -10.70688 -10.65178 -10.12167 -9.68609 -9.35268 -9.01054 -8.31203 -6.45468 1.11301 1.19642 1.39130 1.41165 1.50030 1.75192 2.15762 2.37487 2.46619 2.71307 2.98192 3.00141 3.25694 3.68521 3.91362 3.98222 4.01055 4.13404 4.21218 4.25858 4.30881 4.32912 4.39383 4.58234 4.62040 4.70261 4.74583 4.77562 4.82915 4.86131 4.92395 4.95009 4.97966 5.04077 5.04907 5.06582 5.18076 5.26604 5.52657 5.58534 5.79822 5.93832 5.95254 5.98313 6.02059 6.20726 6.32026 6.65778 6.83284 7.20168 7.24294 7.50835 8.75951 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.002183 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.259184 B =12822.018404 C =14220.729196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 H 0.106 0.894 4 C 0.150 3.850 5 N -0.710 5.710 6 C 0.710 3.290 7 O -0.606 6.606 8 N -0.637 5.637 9 C 0.286 3.714 10 C -0.292 4.292 11 C 0.055 3.945 12 N -0.346 5.346 13 C 0.273 3.727 14 C -0.547 4.547 15 H 0.052 0.948 16 C 0.018 3.982 17 N -0.921 5.921 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.270 1.270 22 N -0.349 5.349 23 N -0.535 5.535 24 C 0.020 3.980 25 C 0.058 3.942 26 O -0.407 6.407 27 C 0.061 3.939 28 C 0.017 3.983 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.415 0.585 35 H 0.419 0.581 36 H 0.167 0.833 37 H 0.200 0.800 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.273 0.727 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.111 0.889 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.352 9.648 -15.835 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.032 4.032 3 H 0.124 0.876 4 C 0.026 3.974 5 N -0.366 5.366 6 C 0.409 3.591 7 O -0.484 6.484 8 N -0.289 5.289 9 C 0.030 3.970 10 C -0.324 4.324 11 C -0.093 4.093 12 N -0.128 5.128 13 C 0.154 3.846 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.559 5.559 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.195 1.195 22 N -0.180 5.180 23 N -0.261 5.261 24 C -0.108 4.108 25 C -0.019 4.019 26 O -0.326 6.326 27 C -0.016 4.016 28 C -0.111 4.111 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.256 0.744 36 H 0.184 0.816 37 H 0.217 0.783 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.121 0.879 43 H 0.075 0.925 44 H 0.129 0.871 45 H 0.071 0.929 46 H 0.122 0.878 47 H 0.101 0.899 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.130 9.322 -15.534 29.381 hybrid contribution -0.228 -0.263 -0.407 0.536 sum -23.359 9.059 -15.941 29.696 Atomic orbital electron populations 1.22324 0.95086 1.02896 1.03537 1.21950 0.94334 0.98643 0.88238 0.87640 1.21340 0.77591 1.00660 0.97844 1.44721 1.07711 1.66365 1.17838 1.15822 0.80218 0.78993 0.84045 1.90830 1.68296 1.55548 1.33759 1.41396 1.05231 1.64452 1.17816 1.19094 0.89851 0.98249 0.89797 1.21679 1.01062 1.14974 0.94653 1.23150 0.84924 1.00787 1.00451 1.48810 1.07882 1.45653 1.10458 1.19319 0.74485 0.95664 0.95084 1.21376 1.00436 1.30640 1.06107 0.92972 1.25739 0.97298 0.97609 0.97577 1.69987 1.14212 1.45678 1.26067 0.85411 0.77588 0.78774 0.78724 1.19822 1.19786 1.19500 1.77243 1.12523 1.24615 1.03616 1.62370 1.57992 1.02995 1.02706 1.22821 1.00325 0.97927 0.89696 1.22827 0.97415 0.83122 0.98528 1.87966 1.77669 1.27001 1.39936 1.22716 1.00542 0.94144 0.84152 1.22792 0.97770 0.91181 0.99383 0.92152 0.90661 0.91331 0.92500 0.90972 0.74771 0.74381 0.81623 0.78292 0.96109 0.92403 0.91846 0.93492 0.87899 0.92460 0.87104 0.92924 0.87794 0.89879 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.40 71.98 0.60 -0.79 16 2 C 0.08 0.72 2.47 44.92 0.11 0.83 16 3 H 0.11 0.78 8.01 -2.38 -0.02 0.76 16 4 C 0.15 2.26 4.90 86.38 0.42 2.68 16 5 N -0.71 -13.08 5.42 -478.52 -2.59 -15.67 16 6 C 0.71 20.24 8.53 179.06 1.53 21.77 16 7 O -0.61 -21.52 13.47 -4.01 -0.05 -21.57 16 8 N -0.64 -19.71 5.45 -321.24 -1.75 -21.46 16 9 C 0.29 11.67 8.11 133.31 1.08 12.75 16 10 C -0.29 -11.77 9.61 22.11 0.21 -11.56 16 11 C 0.06 2.24 11.44 83.52 0.96 3.19 16 12 N -0.35 -16.56 3.67 -351.82 -1.29 -17.85 16 13 C 0.27 14.37 6.26 85.63 0.54 14.91 16 14 C -0.55 -31.21 9.24 25.60 0.24 -30.98 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.02 1.01 5.46 84.66 0.46 1.47 16 17 N -0.92 -52.55 13.29 21.45 0.28 -52.27 16 18 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 N -0.35 -16.51 12.42 -54.44 -0.68 -17.18 16 23 N -0.54 -5.62 4.07 -869.98 -3.54 -9.16 16 24 C 0.02 0.17 5.40 86.31 0.47 0.64 16 25 C 0.06 0.63 7.01 72.01 0.50 1.14 16 26 O -0.41 -6.64 10.83 -148.98 -1.61 -8.25 16 27 C 0.06 0.86 7.01 72.02 0.50 1.36 16 28 C 0.02 0.21 4.76 86.32 0.41 0.62 16 29 H 0.06 0.55 6.37 -2.38 -0.02 0.53 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.48 6.80 -2.39 -0.02 0.46 16 32 H 0.06 0.98 6.77 -2.38 -0.02 0.96 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.42 5.93 8.10 -92.71 -0.75 5.18 16 35 H 0.42 10.52 8.84 -92.71 -0.82 9.70 16 36 H 0.17 6.52 5.91 -2.91 -0.02 6.50 16 37 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 38 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 40 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.05 0.42 6.78 -2.39 -0.02 0.40 16 42 H 0.10 0.57 8.08 -2.38 -0.02 0.55 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 1.15 6.53 -2.39 -0.02 1.13 16 48 H 0.05 0.62 6.36 -2.38 -0.02 0.60 16 Total: -1.00 -72.21 385.86 -1.74 -73.95 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: -0.57 Total: 25.54 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 8.04 Total: 18.03 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -9.57 Total: -133.60 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.67 Total: -29.83 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.21 -1.74 -73.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.578 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds