Wall clock time and date at job start Tue Mar 31 2020 20:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47431 * 2 1 4 4 C 1.53001 * 109.46872 * 240.00547 * 2 1 3 5 5 N 1.46500 * 109.47049 * 185.00361 * 4 2 1 6 6 C 1.34779 * 119.99738 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00349 * 359.97438 * 6 5 4 8 8 N 1.34787 * 119.99663 * 179.97438 * 6 5 4 9 9 C 1.40196 * 119.99563 * 179.97438 * 8 6 5 10 10 C 1.40395 * 125.97533 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86535 * 179.71691 * 10 9 8 12 12 N 1.34960 * 107.86064 * 0.42509 * 11 10 9 13 13 C 1.46500 * 125.97985 * 179.83521 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71356 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31213 * 125.96849 * 179.97438 * 9 8 6 23 23 N 1.46895 * 109.47174 * 120.00646 * 2 1 3 24 24 C 1.47015 * 111.00449 * 58.63057 * 23 2 1 25 25 C 1.53099 * 109.25768 * 177.60661 * 24 23 2 26 26 O 1.43014 * 109.25398 * 56.85263 * 25 24 23 27 27 C 1.43010 * 113.74110 * 301.32166 * 26 25 24 28 28 C 1.47015 * 110.99896 * 294.99785 * 23 2 1 29 29 H 1.09000 * 109.46654 * 299.99764 * 1 2 3 30 30 H 1.08999 * 109.47194 * 59.99499 * 1 2 3 31 31 H 1.09000 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47616 * 64.99660 * 4 2 1 33 33 H 1.09001 * 109.47145 * 304.99946 * 4 2 1 34 34 H 0.96998 * 120.00159 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99666 * 359.97438 * 8 6 5 36 36 H 1.08003 * 126.06887 * 0.02562 * 10 9 8 37 37 H 1.08007 * 126.06985 * 180.26350 * 11 10 9 38 38 H 1.09004 * 109.47078 * 4.72118 * 13 12 11 39 39 H 1.08993 * 109.47364 * 244.71890 * 13 12 11 40 40 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 41 41 H 1.08999 * 109.50463 * 297.54562 * 24 23 2 42 42 H 1.09003 * 109.50434 * 57.67115 * 24 23 2 43 43 H 1.08996 * 109.50509 * 296.91542 * 25 24 23 44 44 H 1.09007 * 109.53585 * 176.80638 * 25 24 23 45 45 H 1.08996 * 109.50696 * 298.74270 * 27 26 25 46 46 H 1.08996 * 109.54352 * 178.63249 * 27 26 25 47 47 H 1.09002 * 109.50419 * 302.32615 * 28 23 2 48 48 H 1.08998 * 109.50864 * 62.41383 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5682 -1.8860 -3.1417 8 7 5.5162 -1.5255 -2.1372 9 6 6.2161 -2.1529 -3.1773 10 6 5.6477 -2.7223 -4.3279 11 6 6.6525 -3.2179 -5.0854 12 7 7.8133 -2.9824 -4.4385 13 6 9.1502 -3.3584 -4.9050 14 6 10.0300 -2.1355 -4.9471 15 1 9.6330 -1.1745 -4.6551 16 6 11.3415 -2.2435 -5.3583 17 7 11.8264 -3.4147 -5.7089 18 14 12.4322 -0.7279 -5.4098 19 1 13.7890 -1.1100 -5.8771 20 1 11.8498 0.2696 -6.3432 21 1 12.5247 -0.1383 -4.0500 22 7 7.5169 -2.3107 -3.2456 23 7 2.0197 -0.6926 1.1993 24 6 1.5218 -2.0749 1.2497 25 6 2.1027 -2.7763 2.4804 26 8 1.7582 -2.0337 3.6530 27 6 2.2282 -0.6831 3.6379 28 6 1.6485 0.0395 2.4190 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9824 -0.4623 -0.4320 35 1 5.9986 -1.1607 -1.3788 36 1 4.5952 -2.7539 -4.5682 37 1 6.5448 -3.7163 -6.0375 38 1 9.0787 -3.7889 -5.9039 39 1 9.5801 -4.0920 -4.2231 40 1 11.2601 -4.2019 -5.6819 41 1 0.4337 -2.0677 1.3146 42 1 1.8298 -2.6058 0.3489 43 1 3.1876 -2.8311 2.3898 44 1 1.6922 -3.7835 2.5536 45 1 3.3166 -0.6770 3.5810 46 1 1.9084 -0.1756 4.5479 47 1 2.0490 1.0522 2.3717 48 1 0.5625 0.0812 2.5022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118894321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:43 Heat of formation + Delta-G solvation = 21.049775 kcal Electronic energy + Delta-G solvation = -29032.669657 eV Core-core repulsion = 24932.109982 eV Total energy + Delta-G solvation = -4100.559675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80741 -40.37963 -39.43779 -37.39255 -34.84089 -34.34238 -33.59921 -31.75437 -31.55479 -30.64468 -29.31621 -27.19176 -26.80532 -25.87467 -24.47229 -23.10854 -22.15073 -21.60262 -20.48458 -20.14670 -19.69624 -17.92740 -17.30291 -17.15325 -16.90501 -16.47036 -15.87343 -15.64647 -15.56919 -15.27004 -15.25139 -14.74014 -14.53797 -14.28009 -14.04617 -13.76891 -13.45558 -13.32542 -13.04289 -12.75432 -12.63310 -12.40604 -12.27299 -12.12445 -12.06913 -11.79255 -11.68778 -11.18338 -11.12728 -10.91574 -10.79646 -10.40779 -10.15011 -10.11437 -10.09161 -9.68881 -9.20786 -8.95131 -8.87084 -8.56119 -8.13502 -7.42829 -6.55903 -4.29732 2.39534 2.64207 3.09682 3.19866 3.38845 3.40679 3.46451 3.57578 3.62143 3.83573 4.17389 4.31230 4.40868 4.43809 4.46135 4.65825 4.66767 4.71740 4.77953 4.86565 5.05337 5.12675 5.17720 5.19173 5.22131 5.28586 5.33489 5.44597 5.47764 5.52945 5.57582 5.69111 5.76174 6.21331 6.27561 6.42708 6.44756 6.49511 6.51834 6.69890 6.71918 6.80940 7.06097 7.47481 7.67000 7.88486 7.98456 8.37283 8.59460 8.62932 8.67326 9.38410 10.81510 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.002036 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.790303 B =13751.181115 C =14198.821230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.094 0.906 4 C 0.149 3.851 5 N -0.733 5.733 6 C 0.712 3.288 7 O -0.573 6.573 8 N -0.644 5.644 9 C 0.279 3.721 10 C -0.284 4.284 11 C 0.049 3.951 12 N -0.320 5.320 13 C 0.250 3.750 14 C -0.606 4.606 15 H 0.063 0.937 16 C 0.022 3.978 17 N -0.905 5.905 18 Si 1.077 2.923 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.285 1.285 22 N -0.306 5.306 23 N -0.529 5.529 24 C 0.011 3.989 25 C 0.063 3.937 26 O -0.387 6.387 27 C 0.063 3.937 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.407 0.593 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.267 0.733 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.153 6.450 16.319 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.042 4.042 3 H 0.112 0.888 4 C 0.024 3.976 5 N -0.390 5.390 6 C 0.411 3.589 7 O -0.449 6.449 8 N -0.294 5.294 9 C 0.025 3.975 10 C -0.315 4.315 11 C -0.100 4.100 12 N -0.102 5.102 13 C 0.132 3.868 14 C -0.645 4.645 15 H 0.081 0.919 16 C -0.183 4.183 17 N -0.541 5.541 18 Si 0.904 3.096 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.212 1.212 22 N -0.137 5.137 23 N -0.254 5.254 24 C -0.117 4.117 25 C -0.014 4.014 26 O -0.305 6.305 27 C -0.014 4.014 28 C -0.113 4.113 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.238 0.762 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.544 6.614 15.752 27.496 hybrid contribution -2.594 -0.145 0.459 2.638 sum -24.138 6.469 16.211 29.787 Atomic orbital electron populations 1.22375 0.96053 1.02955 1.03008 1.22029 0.93777 0.98787 0.89574 0.88829 1.21221 0.79112 1.00775 0.96446 1.44820 1.07194 1.63418 1.23598 1.15646 0.80733 0.79391 0.83098 1.90860 1.67455 1.52893 1.33657 1.41382 1.04961 1.60241 1.22771 1.18793 0.90333 0.98491 0.89932 1.21520 1.00936 1.12740 0.96312 1.22550 0.85916 1.02235 0.99341 1.48746 1.07416 1.40908 1.13087 1.19735 0.75058 0.97629 0.94408 1.22106 0.98089 0.94500 1.49782 0.91870 1.25921 0.96227 1.03048 0.93056 1.70849 1.39418 0.99317 1.44509 0.83420 0.75769 0.73667 0.76763 1.20546 1.21257 1.21157 1.77345 1.11033 1.20070 1.05232 1.62413 1.58997 1.02206 1.01743 1.22887 0.98590 0.89933 1.00274 1.22676 1.00093 0.94931 0.83661 1.87992 1.78532 1.23669 1.40321 1.22657 0.98921 0.82488 0.97337 1.22820 0.99496 0.98510 0.90443 0.91847 0.91227 0.91792 0.90852 0.91507 0.76151 0.75849 0.82073 0.81610 0.93672 0.94843 0.92282 0.93347 0.89027 0.92090 0.88449 0.92136 0.88546 0.89538 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 8.49 37.16 0.32 -0.60 16 2 C 0.07 0.38 2.51 -67.71 -0.17 0.21 16 3 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 4 C 0.15 1.23 4.70 -4.04 -0.02 1.21 16 5 N -0.73 -7.23 5.39 -65.22 -0.35 -7.58 16 6 C 0.71 10.42 8.53 -86.91 -0.74 9.68 16 7 O -0.57 -10.29 13.47 5.29 0.07 -10.22 16 8 N -0.64 -10.15 5.46 -15.50 -0.08 -10.24 16 9 C 0.28 5.72 8.11 -154.36 -1.25 4.47 16 10 C -0.28 -5.77 9.61 -39.84 -0.38 -6.15 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 13 C 0.25 6.41 5.57 -5.19 -0.03 6.38 16 14 C -0.61 -17.22 9.24 -34.44 -0.32 -17.54 16 15 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 17 N -0.91 -26.53 13.65 55.43 0.76 -25.78 16 18 Si 1.08 25.08 29.90 -169.99 -5.08 20.00 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 N -0.31 -7.20 12.42 31.44 0.39 -6.81 16 23 N -0.53 -3.26 4.16 -226.33 -0.94 -4.20 16 24 C 0.01 0.08 4.86 -3.71 -0.02 0.06 16 25 C 0.06 0.46 7.01 37.21 0.26 0.73 16 26 O -0.39 -3.32 10.83 -35.23 -0.38 -3.70 16 27 C 0.06 0.39 7.01 37.21 0.26 0.65 16 28 C 0.02 0.08 5.31 -3.71 -0.02 0.06 16 29 H 0.06 0.30 6.58 -51.93 -0.34 -0.05 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.35 6.44 -51.93 -0.33 0.01 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.61 6.65 -51.93 -0.35 0.26 16 34 H 0.40 3.25 8.15 -40.82 -0.33 2.92 16 35 H 0.41 5.28 8.84 -40.82 -0.36 4.92 16 36 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 37 H 0.17 2.77 8.06 -52.48 -0.42 2.35 16 38 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 39 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 40 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 41 H 0.05 0.33 6.42 -51.93 -0.33 0.00 16 42 H 0.09 0.70 6.33 -51.93 -0.33 0.37 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.37 8.13 -51.93 -0.42 -0.05 16 48 H 0.05 0.27 6.56 -51.93 -0.34 -0.08 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -34.58 384.12 -9.63 -44.21 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.16 Total: 5.88 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.41 Total: 0.49 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -0.46 Total: -62.43 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.31 Total: -13.92 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.58 -9.63 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.261 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds