Wall clock time and date at job start Tue Mar 31 2020 20:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47431 * 2 1 4 4 C 1.53001 * 109.46872 * 240.00547 * 2 1 3 5 5 N 1.46500 * 109.47049 * 185.00361 * 4 2 1 6 6 C 1.34779 * 119.99738 * 179.97438 * 5 4 2 7 7 O 1.21589 * 120.00349 * 359.97438 * 6 5 4 8 8 N 1.34787 * 119.99663 * 179.97438 * 6 5 4 9 9 C 1.40196 * 119.99563 * 179.97438 * 8 6 5 10 10 C 1.40395 * 125.97533 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86535 * 179.71691 * 10 9 8 12 12 N 1.34960 * 107.86064 * 0.42509 * 11 10 9 13 13 C 1.46500 * 125.97985 * 179.83521 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71356 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31213 * 125.96849 * 179.97438 * 9 8 6 23 23 N 1.46895 * 109.47174 * 120.00646 * 2 1 3 24 24 C 1.47015 * 111.00449 * 58.63057 * 23 2 1 25 25 C 1.53099 * 109.25768 * 177.60661 * 24 23 2 26 26 O 1.43014 * 109.25398 * 56.85263 * 25 24 23 27 27 C 1.43010 * 113.74110 * 301.32166 * 26 25 24 28 28 C 1.47015 * 110.99896 * 294.99785 * 23 2 1 29 29 H 1.09000 * 109.46654 * 299.99764 * 1 2 3 30 30 H 1.08999 * 109.47194 * 59.99499 * 1 2 3 31 31 H 1.09000 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47616 * 64.99660 * 4 2 1 33 33 H 1.09001 * 109.47145 * 304.99946 * 4 2 1 34 34 H 0.96998 * 120.00159 * 359.97438 * 5 4 2 35 35 H 0.96998 * 119.99666 * 359.97438 * 8 6 5 36 36 H 1.08003 * 126.06887 * 0.02562 * 10 9 8 37 37 H 1.08007 * 126.06985 * 180.26350 * 11 10 9 38 38 H 1.09004 * 109.47078 * 4.72118 * 13 12 11 39 39 H 1.08993 * 109.47364 * 244.71890 * 13 12 11 40 40 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 41 41 H 1.08999 * 109.50463 * 297.54562 * 24 23 2 42 42 H 1.09003 * 109.50434 * 57.67115 * 24 23 2 43 43 H 1.08996 * 109.50509 * 296.91542 * 25 24 23 44 44 H 1.09007 * 109.53585 * 176.80638 * 25 24 23 45 45 H 1.08996 * 109.50696 * 298.74270 * 27 26 25 46 46 H 1.08996 * 109.54352 * 178.63249 * 27 26 25 47 47 H 1.09002 * 109.50419 * 302.32615 * 28 23 2 48 48 H 1.08998 * 109.50864 * 62.41383 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5682 -1.8860 -3.1417 8 7 5.5162 -1.5255 -2.1372 9 6 6.2161 -2.1529 -3.1773 10 6 5.6477 -2.7223 -4.3279 11 6 6.6525 -3.2179 -5.0854 12 7 7.8133 -2.9824 -4.4385 13 6 9.1502 -3.3584 -4.9050 14 6 10.0300 -2.1355 -4.9471 15 1 9.6330 -1.1745 -4.6551 16 6 11.3415 -2.2435 -5.3583 17 7 11.8264 -3.4147 -5.7089 18 14 12.4322 -0.7279 -5.4098 19 1 13.7890 -1.1100 -5.8771 20 1 11.8498 0.2696 -6.3432 21 1 12.5247 -0.1383 -4.0500 22 7 7.5169 -2.3107 -3.2456 23 7 2.0197 -0.6926 1.1993 24 6 1.5218 -2.0749 1.2497 25 6 2.1027 -2.7763 2.4804 26 8 1.7582 -2.0337 3.6530 27 6 2.2282 -0.6831 3.6379 28 6 1.6485 0.0395 2.4190 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9824 -0.4623 -0.4320 35 1 5.9986 -1.1607 -1.3788 36 1 4.5952 -2.7539 -4.5682 37 1 6.5448 -3.7163 -6.0375 38 1 9.0787 -3.7889 -5.9039 39 1 9.5801 -4.0920 -4.2231 40 1 11.2601 -4.2019 -5.6819 41 1 0.4337 -2.0677 1.3146 42 1 1.8298 -2.6058 0.3489 43 1 3.1876 -2.8311 2.3898 44 1 1.6922 -3.7835 2.5536 45 1 3.3166 -0.6770 3.5810 46 1 1.9084 -0.1756 4.5479 47 1 2.0490 1.0522 2.3717 48 1 0.5625 0.0812 2.5022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118894321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:42 Heat of formation + Delta-G solvation = -4.609565 kcal Electronic energy + Delta-G solvation = -29033.782329 eV Core-core repulsion = 24932.109982 eV Total energy + Delta-G solvation = -4101.672347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27663 -41.19179 -40.53077 -38.04462 -36.39981 -35.49834 -35.25386 -32.78219 -32.13580 -31.93496 -30.98016 -28.34836 -27.60278 -27.11919 -25.09517 -24.94170 -23.12720 -22.55494 -22.07749 -21.26962 -20.52583 -19.25201 -19.05898 -18.30053 -17.83295 -17.28330 -16.95094 -16.78086 -16.18250 -16.09893 -16.01466 -15.86463 -15.78854 -15.56289 -15.33079 -15.08058 -14.92461 -14.21631 -14.01514 -13.95836 -13.82663 -13.67311 -13.22098 -13.19883 -13.09957 -12.73620 -12.60730 -12.58637 -12.19451 -11.98133 -11.94733 -11.67856 -11.65757 -11.43208 -11.14410 -10.99211 -10.68442 -10.66785 -10.16028 -9.77746 -9.36599 -9.11717 -8.75512 -6.54615 1.01206 1.12137 1.51620 1.58281 1.67753 1.79762 2.06332 2.40272 2.49603 2.69845 2.96659 3.02142 3.20333 3.64299 3.88092 3.91220 3.97105 4.12594 4.16237 4.18893 4.23713 4.31205 4.37756 4.55657 4.58258 4.59670 4.67360 4.71172 4.75492 4.78741 4.81283 4.85159 4.88336 4.92514 5.02746 5.05727 5.11339 5.25664 5.48127 5.56707 5.84459 5.88090 5.93077 5.96673 5.98079 6.19413 6.28827 6.43345 6.74318 7.12171 7.21312 7.46035 8.59378 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.002036 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.790303 B =13751.181115 C =14198.821230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.107 0.893 4 C 0.148 3.852 5 N -0.709 5.709 6 C 0.711 3.289 7 O -0.605 6.605 8 N -0.637 5.637 9 C 0.289 3.711 10 C -0.289 4.289 11 C 0.054 3.946 12 N -0.346 5.346 13 C 0.260 3.740 14 C -0.620 4.620 15 H 0.045 0.955 16 C -0.020 4.020 17 N -0.923 5.923 18 Si 1.120 2.880 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.275 1.275 22 N -0.348 5.348 23 N -0.534 5.534 24 C 0.017 3.983 25 C 0.062 3.938 26 O -0.406 6.406 27 C 0.058 3.942 28 C 0.019 3.981 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.415 0.585 35 H 0.420 0.580 36 H 0.169 0.831 37 H 0.201 0.799 38 H 0.053 0.947 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.345 8.135 17.000 31.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.032 4.032 3 H 0.125 0.875 4 C 0.024 3.976 5 N -0.366 5.366 6 C 0.410 3.590 7 O -0.484 6.484 8 N -0.289 5.289 9 C 0.032 3.968 10 C -0.320 4.320 11 C -0.094 4.094 12 N -0.127 5.127 13 C 0.141 3.859 14 C -0.658 4.658 15 H 0.063 0.937 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.941 3.059 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.200 1.200 22 N -0.179 5.179 23 N -0.259 5.259 24 C -0.111 4.111 25 C -0.015 4.015 26 O -0.325 6.325 27 C -0.019 4.019 28 C -0.109 4.109 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.257 0.743 36 H 0.186 0.814 37 H 0.217 0.783 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.129 0.871 47 H 0.121 0.879 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.787 8.321 16.490 29.333 hybrid contribution -2.389 -0.674 0.333 2.504 sum -25.176 7.647 16.823 31.230 Atomic orbital electron populations 1.22332 0.95150 1.02778 1.03673 1.21963 0.94303 0.98805 0.88108 0.87477 1.21375 0.77617 1.00767 0.97873 1.44721 1.07847 1.61560 1.22448 1.15814 0.80175 0.79432 0.83584 1.90830 1.67886 1.54397 1.35257 1.41405 1.05408 1.59874 1.22189 1.19099 0.89756 0.97165 0.90731 1.21699 1.01147 1.12814 0.96374 1.23164 0.84749 1.01242 1.00227 1.48540 1.07373 1.42740 1.14084 1.19405 0.75995 0.96272 0.94271 1.22285 0.98972 0.94677 1.49893 0.93668 1.27290 0.97672 1.04932 0.92061 1.70946 1.39516 0.99716 1.45782 0.82879 0.74443 0.70972 0.77624 1.20002 1.19636 1.20031 1.77263 1.12681 1.22012 1.05969 1.62413 1.59171 1.02009 1.02313 1.22779 0.98570 0.90319 0.99473 1.22704 0.99677 0.95376 0.83716 1.87965 1.78835 1.24904 1.40843 1.22826 0.98842 0.81687 0.98529 1.22831 0.99576 0.98966 0.89488 0.91093 0.90636 0.92414 0.91029 0.92274 0.74728 0.74325 0.81395 0.78255 0.92879 0.96629 0.92993 0.93227 0.89988 0.92848 0.87892 0.92444 0.87066 0.87874 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.49 71.98 0.61 -0.77 16 2 C 0.08 0.70 2.51 44.92 0.11 0.81 16 3 H 0.11 0.77 8.12 -2.39 -0.02 0.75 16 4 C 0.15 2.18 4.70 86.38 0.41 2.59 16 5 N -0.71 -12.78 5.39 -478.52 -2.58 -15.36 16 6 C 0.71 19.97 8.53 179.05 1.53 21.50 16 7 O -0.61 -21.23 13.47 -4.00 -0.05 -21.29 16 8 N -0.64 -19.53 5.46 -321.22 -1.75 -21.28 16 9 C 0.29 11.74 8.11 133.31 1.08 12.82 16 10 C -0.29 -11.57 9.61 22.10 0.21 -11.35 16 11 C 0.05 2.18 11.44 83.52 0.96 3.14 16 12 N -0.35 -16.54 3.67 -351.84 -1.29 -17.83 16 13 C 0.26 13.56 5.57 85.64 0.48 14.04 16 14 C -0.62 -35.63 9.24 25.60 0.24 -35.39 16 15 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16 16 C -0.02 -1.13 5.46 84.65 0.46 -0.67 16 17 N -0.92 -54.36 13.65 21.45 0.29 -54.06 16 18 Si 1.12 49.94 29.90 68.60 2.05 51.99 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 N -0.35 -16.52 12.42 -54.44 -0.68 -17.20 16 23 N -0.53 -5.53 4.16 -869.97 -3.62 -9.15 16 24 C 0.02 0.21 4.86 86.31 0.42 0.63 16 25 C 0.06 0.87 7.01 72.02 0.50 1.38 16 26 O -0.41 -6.58 10.83 -148.98 -1.61 -8.20 16 27 C 0.06 0.62 7.01 72.02 0.50 1.12 16 28 C 0.02 0.16 5.31 86.31 0.46 0.62 16 29 H 0.07 0.47 6.58 -2.39 -0.02 0.46 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.53 6.44 -2.39 -0.02 0.52 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.01 6.65 -2.39 -0.02 0.99 16 34 H 0.42 5.77 8.15 -92.71 -0.76 5.01 16 35 H 0.42 10.44 8.84 -92.71 -0.82 9.62 16 36 H 0.17 6.54 5.91 -2.91 -0.02 6.52 16 37 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 38 H 0.05 2.65 7.94 -2.39 -0.02 2.64 16 39 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 40 H 0.26 15.18 7.22 -92.71 -0.67 14.51 16 41 H 0.05 0.61 6.42 -2.39 -0.02 0.60 16 42 H 0.08 1.19 6.33 -2.39 -0.02 1.17 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 1.25 8.14 -2.38 -0.02 1.24 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.10 0.55 8.13 -2.39 -0.02 0.53 16 48 H 0.05 0.42 6.56 -2.39 -0.02 0.40 16 Total: -1.00 -74.44 384.12 -1.74 -76.19 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.47 Total: 25.74 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 7.97 Total: 10.46 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -9.62 Total: -134.89 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.67 Total: -29.48 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.05 Total: 51.99 kcal Total: -74.44 -1.74 -76.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.576 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds