Wall clock time and date at job start Tue Mar 31 2020 20:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47366 * 2 1 4 4 C 1.53001 * 109.47308 * 119.99664 * 2 1 3 5 5 N 1.46504 * 109.46970 * 65.00250 * 4 2 1 6 6 C 1.34772 * 120.00248 * 180.02562 * 5 4 2 7 7 O 1.21533 * 120.00039 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00125 * 180.02562 * 6 5 4 9 9 C 1.34772 * 120.00125 * 180.02562 * 8 6 5 10 10 O 1.21239 * 120.00145 * 359.97438 * 9 8 6 11 11 C 1.50703 * 120.00270 * 179.97438 * 9 8 6 12 12 H 1.08996 * 109.46558 * 299.99678 * 11 9 8 13 13 C 1.52997 * 109.47122 * 59.99329 * 11 9 8 14 14 N 1.46501 * 109.47103 * 179.97438 * 11 9 8 15 15 C 1.39988 * 119.99747 * 154.99989 * 14 11 9 16 16 C 1.40432 * 125.97374 * 0.02562 * 15 14 11 17 17 C 1.35251 * 107.86019 * 179.73886 * 16 15 14 18 18 N 1.34962 * 107.86128 * 0.42675 * 17 16 15 19 19 C 1.46500 * 125.97410 * 179.83595 * 18 17 16 20 20 C 1.50706 * 109.47299 * 124.71196 * 19 18 17 21 21 H 1.07998 * 119.99503 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00434 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 359.72891 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 N 1.31219 * 125.97677 * 180.02562 * 15 14 11 29 29 H 1.09002 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46828 * 300.00080 * 1 2 3 31 31 H 1.08999 * 109.46903 * 60.00323 * 1 2 3 32 32 H 1.08997 * 109.47554 * 239.99848 * 2 1 3 33 33 H 1.09001 * 109.47407 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47278 * 300.00346 * 3 2 1 35 35 H 1.09004 * 109.47176 * 59.99672 * 3 2 1 36 36 H 1.08997 * 109.47444 * 305.00183 * 4 2 1 37 37 H 1.08996 * 109.47504 * 184.99679 * 4 2 1 38 38 H 0.97007 * 119.99940 * 359.97438 * 5 4 2 39 39 H 0.96998 * 119.99860 * 359.97438 * 8 6 5 40 40 H 1.08995 * 109.47327 * 300.00781 * 13 11 9 41 41 H 1.09011 * 109.46987 * 60.00296 * 13 11 9 42 42 H 1.08998 * 109.47575 * 179.97438 * 13 11 9 43 43 H 0.96999 * 120.00325 * 335.00102 * 14 11 9 44 44 H 1.07998 * 126.07497 * 0.02562 * 16 15 14 45 45 H 1.08000 * 126.07179 * 180.26370 * 17 16 15 46 46 H 1.09004 * 109.47078 * 4.71958 * 19 18 17 47 47 H 1.08993 * 109.47364 * 244.71729 * 19 18 17 48 48 H 0.97000 * 120.00236 * 0.27947 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 1.9956 -2.9680 2.1912 7 8 2.6269 -2.5502 3.1419 8 7 1.6395 -4.2668 2.1370 9 6 1.9822 -5.1018 3.1378 10 8 2.6112 -4.6848 4.0867 11 6 1.5836 -6.5539 3.0775 12 1 0.4973 -6.6307 3.0307 13 6 2.1946 -7.1992 1.8320 14 7 2.0714 -7.2443 4.2740 15 6 1.4289 -8.4039 4.7238 16 6 0.3125 -9.0125 4.1276 17 6 -0.0009 -10.1082 4.8559 18 7 0.8743 -10.1887 5.8801 19 6 0.8939 -11.2245 6.9160 20 6 2.2546 -11.8712 6.9541 21 1 3.0275 -11.5431 6.2750 22 6 2.5127 -12.8816 7.8560 23 7 1.5730 -13.2775 8.6866 24 14 4.1995 -13.6828 7.9037 25 1 4.2211 -14.8463 6.9812 26 1 5.2275 -12.6976 7.4821 27 1 4.4908 -14.1414 9.2857 28 7 1.7645 -9.1122 5.7761 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 1.1483 -2.4663 0.4319 39 1 1.1360 -4.6003 1.3780 40 1 1.8320 -6.6855 0.9417 41 1 3.2809 -7.1223 1.8788 42 1 1.9067 -8.2496 1.7886 43 1 2.8396 -6.8980 4.7545 44 1 -0.2014 -8.6694 3.2419 45 1 -0.8097 -10.7951 4.6553 46 1 0.1396 -11.9783 6.6903 47 1 0.6786 -10.7737 7.8847 48 1 0.6971 -12.8613 8.6621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152785318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:07 Heat of formation + Delta-G solvation = 9.280529 kcal Electronic energy + Delta-G solvation = -28162.472187 eV Core-core repulsion = 24061.402160 eV Total energy + Delta-G solvation = -4101.070028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52712 -40.32735 -39.13376 -37.15002 -35.80414 -34.94947 -33.78475 -33.54811 -31.60534 -29.83754 -28.90969 -27.78798 -27.05896 -26.12474 -24.85417 -22.97743 -22.13038 -21.16064 -20.72966 -20.39631 -19.62236 -18.97864 -17.59731 -17.17069 -16.67098 -16.29008 -15.96773 -15.89882 -15.46281 -14.96378 -14.86764 -14.45738 -14.14362 -14.03546 -13.86598 -13.74821 -13.53508 -13.19462 -13.15522 -12.87850 -12.63036 -12.57740 -12.42618 -12.11293 -11.81970 -11.74553 -11.67899 -11.54734 -11.33920 -11.11580 -11.08744 -10.73543 -10.40512 -10.13924 -10.04627 -9.80284 -9.68276 -9.55443 -8.86590 -8.52668 -8.02181 -7.13954 -6.52621 -4.26351 1.81082 1.90818 2.80684 2.97712 3.06386 3.39861 3.45652 3.49734 3.62298 3.65800 4.06717 4.11977 4.20447 4.26906 4.41205 4.45711 4.79160 4.90641 4.90784 5.04060 5.09652 5.17562 5.20778 5.23498 5.24903 5.35556 5.41767 5.50969 5.53538 5.62603 5.68815 5.74957 5.82214 5.92803 5.96387 6.07316 6.15277 6.38569 6.54062 6.75095 6.97356 7.10574 7.54110 7.72466 7.73473 7.91659 8.03543 8.11508 8.42042 8.64682 8.80195 9.41801 10.84585 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030143 B = 0.001696 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.669987 B =16505.875922 C =16879.402818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.138 3.862 5 N -0.738 5.738 6 C 0.693 3.307 7 O -0.528 6.528 8 N -0.689 5.689 9 C 0.514 3.486 10 O -0.454 6.454 11 C 0.161 3.839 12 H 0.108 0.892 13 C -0.167 4.167 14 N -0.712 5.712 15 C 0.310 3.690 16 C -0.334 4.334 17 C 0.067 3.933 18 N -0.324 5.324 19 C 0.250 3.750 20 C -0.605 4.605 21 H 0.064 0.936 22 C 0.022 3.978 23 N -0.907 5.907 24 Si 1.079 2.921 25 H -0.286 1.286 26 H -0.286 1.286 27 H -0.282 1.282 28 N -0.324 5.324 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.410 0.590 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.409 0.591 44 H 0.132 0.868 45 H 0.163 0.837 46 H 0.043 0.957 47 H 0.033 0.967 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 23.876 -24.833 34.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.014 3.986 5 N -0.396 5.396 6 C 0.393 3.607 7 O -0.399 6.399 8 N -0.356 5.356 9 C 0.299 3.701 10 O -0.321 6.321 11 C 0.049 3.951 12 H 0.126 0.874 13 C -0.227 4.227 14 N -0.356 5.356 15 C 0.054 3.946 16 C -0.367 4.367 17 C -0.085 4.085 18 N -0.102 5.102 19 C 0.132 3.868 20 C -0.643 4.643 21 H 0.082 0.918 22 C -0.182 4.182 23 N -0.543 5.543 24 Si 0.906 3.094 25 H -0.213 1.213 26 H -0.212 1.212 27 H -0.208 1.208 28 N -0.155 5.155 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.247 0.753 44 H 0.150 0.850 45 H 0.181 0.819 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.284 23.127 -21.522 31.762 hybrid contribution -1.919 1.017 -2.226 3.110 sum -5.203 24.144 -23.748 34.263 Atomic orbital electron populations 1.21887 0.94539 1.01938 1.02387 1.21366 0.96569 0.97091 0.97647 1.21766 1.01429 0.94739 1.02460 1.21398 1.00346 0.78468 0.98382 1.45261 1.60961 1.10009 1.23379 1.16132 0.80481 0.80546 0.83590 1.91095 1.41033 1.75247 1.32555 1.44125 1.56738 1.09355 1.25383 1.21130 0.79290 0.88230 0.81496 1.90857 1.33927 1.76728 1.30547 1.20410 1.00632 0.86341 0.87681 0.87410 1.22333 1.02275 1.02942 0.95109 1.42996 1.36286 1.26421 1.29929 1.19053 0.92894 0.88878 0.93796 1.20716 1.05342 1.02633 1.08024 1.22340 0.96660 0.98814 0.90637 1.48756 1.20122 1.19942 1.21427 1.19698 0.99839 0.82847 0.84442 1.22146 0.97170 1.21506 1.23511 0.91775 1.25912 1.05292 0.94931 0.92106 1.70822 1.04579 1.42603 1.36286 0.83389 0.73749 0.75702 0.76541 1.21275 1.21221 1.20753 1.77524 1.16850 1.00930 1.20184 0.92645 0.92230 0.92240 0.90395 0.92178 0.91998 0.92159 0.91152 0.91184 0.76788 0.75515 0.91751 0.91569 0.89947 0.75312 0.84983 0.81948 0.93893 0.94919 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.07 37.16 0.34 -0.11 16 2 C -0.11 -0.36 2.96 -90.62 -0.27 -0.63 16 3 C -0.15 -0.48 9.19 37.16 0.34 -0.13 16 4 C 0.14 0.83 5.06 -4.04 -0.02 0.81 16 5 N -0.74 -4.39 5.29 -65.24 -0.34 -4.73 16 6 C 0.69 7.30 8.50 -86.92 -0.74 6.57 16 7 O -0.53 -8.70 14.74 -18.47 -0.27 -8.98 16 8 N -0.69 -5.58 5.13 -15.78 -0.08 -5.66 16 9 C 0.51 6.26 7.16 -10.99 -0.08 6.18 16 10 O -0.45 -8.05 14.24 -18.21 -0.26 -8.31 16 11 C 0.16 1.75 2.98 -69.08 -0.21 1.55 16 12 H 0.11 0.97 7.14 -51.93 -0.37 0.60 16 13 C -0.17 -1.40 9.40 37.16 0.35 -1.05 16 14 N -0.71 -11.48 5.16 -54.70 -0.28 -11.76 16 15 C 0.31 6.03 8.14 -154.55 -1.26 4.77 16 16 C -0.33 -5.66 9.92 -39.82 -0.40 -6.05 16 17 C 0.07 1.26 11.44 -17.24 -0.20 1.06 16 18 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 19 C 0.25 6.44 5.57 -5.19 -0.03 6.41 16 20 C -0.60 -17.40 9.24 -34.44 -0.32 -17.71 16 21 H 0.06 1.94 7.81 -52.49 -0.41 1.53 16 22 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 23 N -0.91 -26.85 13.65 55.43 0.76 -26.09 16 24 Si 1.08 25.57 29.90 -169.99 -5.08 20.49 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 N -0.32 -7.77 12.42 31.41 0.39 -7.38 16 29 H 0.05 0.13 7.18 -51.93 -0.37 -0.24 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.40 0.95 7.67 -40.82 -0.31 0.64 16 39 H 0.41 1.23 8.13 -40.82 -0.33 0.90 16 40 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 41 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.41 7.22 7.92 -40.82 -0.32 6.90 16 44 H 0.13 1.70 7.45 -52.49 -0.39 1.30 16 45 H 0.16 2.43 8.06 -52.49 -0.42 2.00 16 46 H 0.04 1.06 7.94 -51.93 -0.41 0.64 16 47 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 48 H 0.27 7.72 7.22 -40.82 -0.29 7.42 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -39.66 403.12 -9.38 -49.05 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.47 Total: 2.91 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.58 Total: 2.18 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.21 Total: -63.43 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.53 Total: -17.28 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.66 -9.38 -49.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152785318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.330 kcal (2) G-P(sol) polarization free energy of solvation -39.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds