Wall clock time and date at job start Tue Mar 31 2020 20:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47012 * 2 1 4 4 C 1.52997 * 109.47022 * 120.00315 * 2 1 3 5 5 N 1.46498 * 109.47557 * 64.99546 * 4 2 1 6 6 C 1.34776 * 120.00469 * 179.97438 * 5 4 2 7 7 O 1.21537 * 119.99452 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00040 * 180.02562 * 6 5 4 9 9 C 1.34773 * 119.99502 * 180.02562 * 8 6 5 10 10 O 1.21236 * 120.00571 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99816 * 180.02562 * 9 8 6 12 12 H 1.09000 * 109.47446 * 60.00187 * 11 9 8 13 13 C 1.53004 * 109.46939 * 299.99975 * 11 9 8 14 14 N 1.46503 * 109.47228 * 179.97438 * 11 9 8 15 15 C 1.39990 * 120.00050 * 204.99906 * 14 11 9 16 16 C 1.40428 * 125.97585 * 359.97438 * 15 14 11 17 17 C 1.35250 * 107.86268 * 180.02562 * 16 15 14 18 18 N 1.34955 * 107.86330 * 0.02562 * 17 16 15 19 19 C 1.46495 * 125.97452 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.47571 * 125.00257 * 19 18 17 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 N 1.31221 * 125.97652 * 180.37589 * 15 14 11 29 29 H 1.09002 * 109.47018 * 300.00090 * 1 2 3 30 30 H 1.09001 * 109.47153 * 59.99800 * 1 2 3 31 31 H 1.08993 * 109.47405 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46574 * 240.00206 * 2 1 3 33 33 H 1.09007 * 109.46715 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47132 * 299.99609 * 3 2 1 35 35 H 1.08992 * 109.47335 * 60.00677 * 3 2 1 36 36 H 1.09000 * 109.47132 * 304.99298 * 4 2 1 37 37 H 1.08998 * 109.46971 * 185.00121 * 4 2 1 38 38 H 0.96996 * 119.99639 * 0.02562 * 5 4 2 39 39 H 0.96996 * 120.00068 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.47078 * 299.99574 * 13 11 9 41 41 H 1.08992 * 109.46885 * 59.99893 * 13 11 9 42 42 H 1.08998 * 109.46831 * 180.02562 * 13 11 9 43 43 H 0.96997 * 120.00236 * 24.99964 * 14 11 9 44 44 H 1.08006 * 126.06874 * 0.07867 * 16 15 14 45 45 H 1.07997 * 126.06549 * 179.97438 * 17 16 15 46 46 H 1.09000 * 109.47378 * 4.99917 * 19 18 17 47 47 H 1.09001 * 109.47153 * 245.00037 * 19 18 17 48 48 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 1.9964 -2.9683 2.1907 7 8 2.6277 -2.5505 3.1414 8 7 1.6402 -4.2670 2.1364 9 6 1.9837 -5.1022 3.1368 10 8 2.6127 -4.6853 4.0856 11 6 1.5860 -6.5545 3.0759 12 1 2.0213 -7.0137 2.1883 13 6 0.0612 -6.6634 3.0106 14 7 2.0746 -7.2453 4.2719 15 6 2.3088 -8.6250 4.2368 16 6 2.1184 -9.4661 3.1285 17 6 2.4544 -10.7228 3.4989 18 7 2.8425 -10.6838 4.7908 19 6 3.2891 -11.8274 5.5901 20 6 4.6489 -11.5348 6.1700 21 1 5.1324 -10.5913 5.9634 22 6 5.2763 -12.4717 6.9633 23 7 6.4654 -12.2185 7.4648 24 14 4.4404 -14.1038 7.3200 25 1 3.6213 -13.9813 8.5526 26 1 3.5649 -14.4715 6.1783 27 1 5.4705 -15.1559 7.5127 28 7 2.7376 -9.3598 5.2359 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6055 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 1.1488 -2.4664 0.4316 39 1 1.1366 -4.6005 1.3774 40 1 -0.3741 -6.2044 3.8983 41 1 -0.3019 -6.1496 2.1206 42 1 -0.2265 -7.7138 2.9671 43 1 2.2359 -6.7466 5.0881 44 1 1.7669 -9.1631 2.1532 45 1 2.4177 -11.6016 2.8722 46 1 3.3470 -12.7128 4.9569 47 1 2.5799 -12.0047 6.3986 48 1 6.9085 -12.8793 8.0197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152785410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:10 Heat of formation + Delta-G solvation = 18.443562 kcal Electronic energy + Delta-G solvation = -28164.392307 eV Core-core repulsion = 24063.719618 eV Total energy + Delta-G solvation = -4100.672689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48882 -40.32085 -39.09923 -37.12014 -35.77409 -34.91018 -33.55170 -33.35761 -31.73173 -30.13558 -28.92804 -27.76693 -27.03029 -26.89196 -24.87213 -22.61215 -22.07968 -21.13127 -20.66808 -20.24918 -19.56635 -18.95316 -17.58509 -16.92518 -16.51804 -16.49542 -15.99566 -15.84653 -15.42433 -14.94010 -14.91508 -14.45985 -14.39065 -14.02127 -13.95747 -13.76458 -13.46729 -13.10413 -13.00055 -12.81806 -12.60494 -12.54759 -12.48616 -12.32866 -12.07244 -11.72325 -11.71672 -11.51948 -11.31380 -11.07679 -11.03938 -10.80408 -10.36444 -10.30064 -9.87999 -9.78790 -9.64772 -9.51889 -9.35137 -8.70596 -8.00808 -7.12184 -6.16859 -4.18813 1.85477 1.94269 2.80830 3.01566 3.06693 3.20166 3.24407 3.28468 3.53028 3.67623 4.06979 4.14700 4.23547 4.27854 4.29472 4.43698 4.80612 4.92936 4.93494 5.06418 5.10627 5.12087 5.20478 5.24687 5.26102 5.38013 5.41287 5.53082 5.53544 5.65276 5.70993 5.78191 5.81839 5.94695 5.96444 6.09619 6.16806 6.38990 6.44395 6.63834 6.93874 7.14207 7.35814 7.58258 7.77443 7.89623 8.07334 8.13208 8.41674 8.78980 8.95455 9.38046 10.96012 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029864 B = 0.001722 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.347616 B =16255.929253 C =16851.322555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.138 3.862 5 N -0.738 5.738 6 C 0.692 3.308 7 O -0.528 6.528 8 N -0.689 5.689 9 C 0.513 3.487 10 O -0.453 6.453 11 C 0.160 3.840 12 H 0.109 0.891 13 C -0.166 4.166 14 N -0.712 5.712 15 C 0.311 3.689 16 C -0.332 4.332 17 C 0.068 3.932 18 N -0.325 5.325 19 C 0.234 3.766 20 C -0.533 4.533 21 H 0.086 0.914 22 C 0.075 3.925 23 N -0.888 5.888 24 Si 0.875 3.125 25 H -0.272 1.272 26 H -0.266 1.266 27 H -0.281 1.281 28 N -0.319 5.319 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.397 0.603 39 H 0.409 0.591 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.410 0.590 44 H 0.133 0.867 45 H 0.164 0.836 46 H 0.050 0.950 47 H 0.036 0.964 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.274 20.360 -22.191 34.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.014 3.986 5 N -0.396 5.396 6 C 0.392 3.608 7 O -0.399 6.399 8 N -0.356 5.356 9 C 0.298 3.702 10 O -0.319 6.319 11 C 0.049 3.951 12 H 0.126 0.874 13 C -0.226 4.226 14 N -0.356 5.356 15 C 0.055 3.945 16 C -0.365 4.365 17 C -0.083 4.083 18 N -0.104 5.104 19 C 0.114 3.886 20 C -0.571 4.571 21 H 0.104 0.896 22 C -0.128 4.128 23 N -0.526 5.526 24 Si 0.701 3.299 25 H -0.198 1.198 26 H -0.190 1.190 27 H -0.207 1.207 28 N -0.151 5.151 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.244 0.756 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.247 0.753 44 H 0.151 0.849 45 H 0.182 0.818 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.716 20.757 -19.375 32.454 hybrid contribution -0.971 -1.078 -1.229 1.901 sum -16.687 19.679 -20.604 33.019 Atomic orbital electron populations 1.21885 0.94571 1.01906 1.02351 1.21367 0.96537 0.97097 0.97684 1.21765 1.01468 0.94735 1.02427 1.21394 1.00391 0.78476 0.98337 1.45254 1.60993 1.09989 1.23389 1.16135 0.80465 0.80558 0.83618 1.91100 1.40922 1.75243 1.32590 1.44121 1.56699 1.09353 1.25438 1.21122 0.79072 0.88283 0.81757 1.90866 1.33554 1.76637 1.30813 1.20412 0.95545 0.87443 0.91710 0.87370 1.22326 0.93591 1.04398 1.02254 1.43002 1.76864 1.02807 1.12932 1.19058 0.97656 0.84852 0.92972 1.20728 1.23441 0.92379 0.99994 1.22329 0.99510 0.98961 0.87522 1.48585 1.47390 1.06270 1.08162 1.19982 0.96976 0.80531 0.91070 1.21138 0.99615 1.05199 1.31138 0.89610 1.24845 0.94801 0.98213 0.94981 1.69883 1.13925 1.35443 1.33302 0.86887 0.79686 0.83813 0.79502 1.19754 1.19031 1.20667 1.77569 1.28202 0.88466 1.20816 0.92247 0.92274 0.92656 0.90387 0.92157 0.92020 0.92164 0.91161 0.91167 0.76817 0.75551 0.91622 0.91762 0.90024 0.75254 0.84939 0.81842 0.93182 0.94657 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.07 37.16 0.34 -0.11 16 2 C -0.11 -0.38 2.96 -90.62 -0.27 -0.65 16 3 C -0.15 -0.51 9.19 37.15 0.34 -0.16 16 4 C 0.14 0.86 5.06 -4.04 -0.02 0.84 16 5 N -0.74 -4.54 5.29 -65.24 -0.34 -4.88 16 6 C 0.69 7.47 8.50 -86.92 -0.74 6.73 16 7 O -0.53 -8.87 14.74 -18.47 -0.27 -9.14 16 8 N -0.69 -5.69 5.13 -15.78 -0.08 -5.77 16 9 C 0.51 6.35 7.16 -10.99 -0.08 6.27 16 10 O -0.45 -8.19 14.24 -18.21 -0.26 -8.45 16 11 C 0.16 1.74 2.98 -69.08 -0.21 1.53 16 12 H 0.11 0.98 7.14 -51.93 -0.37 0.61 16 13 C -0.17 -1.29 9.40 37.16 0.35 -0.95 16 14 N -0.71 -11.41 5.16 -54.70 -0.28 -11.70 16 15 C 0.31 5.96 8.14 -154.55 -1.26 4.70 16 16 C -0.33 -5.46 9.92 -39.82 -0.40 -5.85 16 17 C 0.07 1.22 11.44 -17.24 -0.20 1.02 16 18 N -0.33 -7.34 3.66 -62.56 -0.23 -7.57 16 19 C 0.23 5.62 5.33 -5.20 -0.03 5.59 16 20 C -0.53 -15.46 9.79 -34.44 -0.34 -15.79 16 21 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 22 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 23 N -0.89 -27.31 13.96 55.43 0.77 -26.54 16 24 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 N -0.32 -7.54 12.43 31.41 0.39 -7.15 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.05 0.13 7.18 -51.93 -0.37 -0.24 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 1.01 7.67 -40.82 -0.31 0.70 16 39 H 0.41 1.26 8.13 -40.82 -0.33 0.93 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.25 7.56 -51.93 -0.39 -0.14 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.41 7.23 7.92 -40.82 -0.32 6.91 16 44 H 0.13 1.64 7.45 -52.48 -0.39 1.25 16 45 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 46 H 0.05 1.10 7.12 -51.93 -0.37 0.73 16 47 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -40.44 400.83 -9.03 -49.47 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.50 Total: 4.60 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.60 Total: 5.23 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: 0.23 Total: -63.61 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.53 Total: -17.59 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -40.44 -9.03 -49.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152785410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.917 kcal (2) G-P(sol) polarization free energy of solvation -40.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds