Wall clock time and date at job start Tue Mar 31 2020 20:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47012 * 2 1 4 4 C 1.52997 * 109.47022 * 120.00315 * 2 1 3 5 5 N 1.46498 * 109.47557 * 64.99546 * 4 2 1 6 6 C 1.34776 * 120.00469 * 179.97438 * 5 4 2 7 7 O 1.21537 * 119.99452 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00040 * 180.02562 * 6 5 4 9 9 C 1.34773 * 119.99502 * 180.02562 * 8 6 5 10 10 O 1.21236 * 120.00571 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99816 * 180.02562 * 9 8 6 12 12 H 1.09000 * 109.47446 * 60.00187 * 11 9 8 13 13 C 1.53004 * 109.46939 * 299.99975 * 11 9 8 14 14 N 1.46503 * 109.47228 * 179.97438 * 11 9 8 15 15 C 1.39990 * 120.00050 * 204.99906 * 14 11 9 16 16 C 1.40428 * 125.97585 * 359.97438 * 15 14 11 17 17 C 1.35250 * 107.86268 * 180.02562 * 16 15 14 18 18 N 1.34955 * 107.86330 * 0.02562 * 17 16 15 19 19 C 1.46495 * 125.97452 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.47571 * 125.00257 * 19 18 17 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 N 1.31221 * 125.97652 * 180.37589 * 15 14 11 29 29 H 1.09002 * 109.47018 * 300.00090 * 1 2 3 30 30 H 1.09001 * 109.47153 * 59.99800 * 1 2 3 31 31 H 1.08993 * 109.47405 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46574 * 240.00206 * 2 1 3 33 33 H 1.09007 * 109.46715 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47132 * 299.99609 * 3 2 1 35 35 H 1.08992 * 109.47335 * 60.00677 * 3 2 1 36 36 H 1.09000 * 109.47132 * 304.99298 * 4 2 1 37 37 H 1.08998 * 109.46971 * 185.00121 * 4 2 1 38 38 H 0.96996 * 119.99639 * 0.02562 * 5 4 2 39 39 H 0.96996 * 120.00068 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.47078 * 299.99574 * 13 11 9 41 41 H 1.08992 * 109.46885 * 59.99893 * 13 11 9 42 42 H 1.08998 * 109.46831 * 180.02562 * 13 11 9 43 43 H 0.96997 * 120.00236 * 24.99964 * 14 11 9 44 44 H 1.08006 * 126.06874 * 0.07867 * 16 15 14 45 45 H 1.07997 * 126.06549 * 179.97438 * 17 16 15 46 46 H 1.09000 * 109.47378 * 4.99917 * 19 18 17 47 47 H 1.09001 * 109.47153 * 245.00037 * 19 18 17 48 48 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 1.9964 -2.9683 2.1907 7 8 2.6277 -2.5505 3.1414 8 7 1.6402 -4.2670 2.1364 9 6 1.9837 -5.1022 3.1368 10 8 2.6127 -4.6853 4.0856 11 6 1.5860 -6.5545 3.0759 12 1 2.0213 -7.0137 2.1883 13 6 0.0612 -6.6634 3.0106 14 7 2.0746 -7.2453 4.2719 15 6 2.3088 -8.6250 4.2368 16 6 2.1184 -9.4661 3.1285 17 6 2.4544 -10.7228 3.4989 18 7 2.8425 -10.6838 4.7908 19 6 3.2891 -11.8274 5.5901 20 6 4.6489 -11.5348 6.1700 21 1 5.1324 -10.5913 5.9634 22 6 5.2763 -12.4717 6.9633 23 7 6.4654 -12.2185 7.4648 24 14 4.4404 -14.1038 7.3200 25 1 3.6213 -13.9813 8.5526 26 1 3.5649 -14.4715 6.1783 27 1 5.4705 -15.1559 7.5127 28 7 2.7376 -9.3598 5.2359 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6055 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 1.1488 -2.4664 0.4316 39 1 1.1366 -4.6005 1.3774 40 1 -0.3741 -6.2044 3.8983 41 1 -0.3019 -6.1496 2.1206 42 1 -0.2265 -7.7138 2.9671 43 1 2.2359 -6.7466 5.0881 44 1 1.7669 -9.1631 2.1532 45 1 2.4177 -11.6016 2.8722 46 1 3.3470 -12.7128 4.9569 47 1 2.5799 -12.0047 6.3986 48 1 6.9085 -12.8793 8.0197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152785410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:09 Heat of formation + Delta-G solvation = -13.383898 kcal Electronic energy + Delta-G solvation = -28165.772449 eV Core-core repulsion = 24063.719618 eV Total energy + Delta-G solvation = -4102.052831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.42255 -41.74781 -40.02459 -37.72310 -36.95565 -35.92845 -35.31225 -34.15653 -33.35840 -31.51530 -30.27670 -28.61652 -28.02455 -27.64540 -25.71992 -24.37860 -23.02161 -21.96440 -21.62153 -21.29329 -20.86620 -19.76208 -19.05499 -18.57733 -17.81718 -17.32914 -17.07459 -16.69762 -16.42625 -16.10094 -15.95953 -15.73750 -15.49018 -15.17765 -14.96640 -14.67511 -14.44157 -14.33476 -14.12005 -13.89297 -13.66332 -13.49766 -13.33449 -13.30285 -12.90194 -12.85233 -12.69934 -12.51710 -12.11543 -12.01524 -11.98300 -11.85168 -11.79254 -11.62904 -11.35640 -11.16923 -11.05975 -10.87078 -10.80662 -10.20086 -9.47549 -8.53276 -8.36140 -6.46595 0.88538 1.09970 1.34992 1.37799 1.41400 1.48948 1.78608 2.13949 2.28858 2.30330 2.70412 2.84916 2.96381 3.52101 3.77360 3.96207 3.97511 4.07295 4.13349 4.16867 4.34552 4.58921 4.65469 4.67286 4.70375 4.72609 4.84436 4.85438 4.94162 4.95849 4.98589 5.03291 5.05840 5.07562 5.24237 5.25557 5.27588 5.35480 5.40484 5.45095 5.50312 5.61849 6.03362 6.28459 6.49240 6.53502 6.64089 6.69016 7.00820 7.16624 7.30136 7.36039 8.81491 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029864 B = 0.001722 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.347616 B =16255.929253 C =16851.322555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.136 3.864 5 N -0.711 5.711 6 C 0.688 3.312 7 O -0.593 6.593 8 N -0.663 5.663 9 C 0.517 3.483 10 O -0.519 6.519 11 C 0.160 3.840 12 H 0.139 0.861 13 C -0.158 4.158 14 N -0.719 5.719 15 C 0.312 3.688 16 C -0.317 4.317 17 C 0.068 3.932 18 N -0.358 5.358 19 C 0.243 3.757 20 C -0.547 4.547 21 H 0.018 0.982 22 C 0.008 3.992 23 N -0.947 5.947 24 Si 0.962 3.038 25 H -0.269 1.269 26 H -0.224 1.224 27 H -0.277 1.277 28 N -0.400 5.400 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.420 0.580 39 H 0.438 0.562 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.183 0.817 45 H 0.209 0.791 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.803 18.798 -26.503 38.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.012 3.988 5 N -0.369 5.369 6 C 0.388 3.612 7 O -0.468 6.468 8 N -0.332 5.332 9 C 0.304 3.696 10 O -0.390 6.390 11 C 0.051 3.949 12 H 0.156 0.844 13 C -0.217 4.217 14 N -0.361 5.361 15 C 0.055 3.945 16 C -0.349 4.349 17 C -0.081 4.081 18 N -0.138 5.138 19 C 0.123 3.877 20 C -0.585 4.585 21 H 0.037 0.963 22 C -0.190 4.190 23 N -0.586 5.586 24 Si 0.782 3.218 25 H -0.194 1.194 26 H -0.147 1.147 27 H -0.203 1.203 28 N -0.232 5.232 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.259 0.741 39 H 0.278 0.722 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.230 0.770 44 H 0.200 0.800 45 H 0.225 0.775 46 H 0.101 0.899 47 H 0.054 0.946 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.348 19.227 -23.867 36.244 hybrid contribution 0.143 -0.331 -0.002 0.361 sum -19.205 18.896 -23.868 35.994 Atomic orbital electron populations 1.21894 0.93759 1.02655 1.02376 1.21310 0.97045 0.96710 0.96459 1.21793 1.01252 0.94836 1.02733 1.21455 0.99507 0.78463 0.99421 1.45047 1.59741 1.09420 1.22701 1.16428 0.79907 0.81329 0.83541 1.91074 1.43908 1.76449 1.35419 1.43725 1.55916 1.08150 1.25386 1.21506 0.77664 0.89177 0.81285 1.90859 1.36721 1.77789 1.33609 1.20830 0.97782 0.85782 0.90518 0.84410 1.22311 0.90420 1.05008 1.03965 1.43377 1.76585 1.01940 1.14186 1.19485 0.95981 0.85887 0.93196 1.21244 1.21762 0.91040 1.00868 1.23209 0.97672 1.01236 0.85934 1.48371 1.50071 1.05511 1.09841 1.19736 0.93623 0.82405 0.91985 1.21311 1.02219 1.02811 1.32164 0.96317 1.26034 0.95325 1.03469 0.94124 1.70083 1.16364 1.37565 1.34609 0.85537 0.78806 0.76863 0.80597 1.19398 1.14691 1.20251 1.77433 1.31681 0.89983 1.24136 0.93293 0.91225 0.91555 0.88824 0.92611 0.90801 0.92778 0.92752 0.92790 0.74140 0.72157 0.93186 0.86756 0.89948 0.76972 0.79952 0.77464 0.89854 0.94597 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.07 71.98 0.65 0.13 16 2 C -0.10 -0.49 2.96 -10.80 -0.03 -0.53 16 3 C -0.15 -0.87 9.19 71.98 0.66 -0.21 16 4 C 0.14 1.63 5.06 86.38 0.44 2.07 16 5 N -0.71 -7.50 5.29 -478.60 -2.53 -10.03 16 6 C 0.69 14.42 8.50 179.06 1.52 15.95 16 7 O -0.59 -20.91 14.74 18.93 0.28 -20.63 16 8 N -0.66 -9.57 5.13 -440.53 -2.26 -11.83 16 9 C 0.52 12.46 7.16 87.66 0.63 13.09 16 10 O -0.52 -19.81 14.24 19.87 0.28 -19.53 16 11 C 0.16 3.11 2.98 44.25 0.13 3.24 16 12 H 0.14 1.89 7.14 -2.39 -0.02 1.87 16 13 C -0.16 -1.88 9.40 71.98 0.68 -1.20 16 14 N -0.72 -23.20 5.16 -326.96 -1.69 -24.88 16 15 C 0.31 11.86 8.14 133.39 1.09 12.95 16 16 C -0.32 -9.37 9.92 22.11 0.22 -9.16 16 17 C 0.07 2.24 11.44 83.52 0.96 3.19 16 18 N -0.36 -16.10 3.66 -351.85 -1.29 -17.39 16 19 C 0.24 11.59 5.33 85.63 0.46 12.04 16 20 C -0.55 -33.15 9.79 25.60 0.25 -32.90 16 21 H 0.02 1.33 8.06 -2.91 -0.02 1.31 16 22 C 0.01 0.50 5.47 84.65 0.46 0.96 16 23 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 24 Si 0.96 42.13 27.47 68.60 1.88 44.02 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.22 -8.31 6.54 99.48 0.65 -7.66 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 28 N -0.40 -19.61 12.43 -54.55 -0.68 -20.29 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.07 0.08 7.18 -2.39 -0.02 0.07 16 32 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.07 0.27 8.14 -2.39 -0.02 0.26 16 35 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.42 0.63 7.67 -92.71 -0.71 -0.08 16 39 H 0.44 0.79 8.13 -92.71 -0.75 0.04 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 0.21 7.56 -2.39 -0.02 0.19 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.40 14.92 7.92 -92.71 -0.73 14.19 16 44 H 0.18 3.39 7.45 -2.91 -0.02 3.36 16 45 H 0.21 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.08 3.38 7.12 -2.39 -0.02 3.37 16 47 H 0.04 1.69 7.57 -2.39 -0.02 1.67 16 48 H 0.27 16.05 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -101.51 400.83 1.15 -100.36 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -1.26 Total: 21.28 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 8.11 Total: 19.62 kcal Atomic # 7 Polarization: -136.97 SS G_CDS: -8.15 Total: -145.12 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: 0.56 Total: -40.16 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.02 kcal Total: -101.51 1.15 -100.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152785410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.977 kcal (2) G-P(sol) polarization free energy of solvation -101.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds