Wall clock time and date at job start Tue Mar 31 2020 19:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46845 * 2 1 4 4 N 1.46500 * 109.47367 * 239.99591 * 2 1 3 5 5 C 1.34774 * 119.99683 * 85.00391 * 4 2 1 6 6 O 1.21590 * 120.00196 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99519 * 180.02562 * 5 4 2 8 8 C 1.40197 * 119.99668 * 179.97438 * 7 5 4 9 9 C 1.40402 * 125.97202 * 0.02562 * 8 7 5 10 10 C 1.35248 * 107.86677 * 179.97438 * 9 8 7 11 11 N 1.34967 * 107.85875 * 359.97438 * 10 9 8 12 12 C 1.46494 * 125.97930 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47077 * 124.99993 * 12 11 10 14 14 H 1.07992 * 119.99778 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99526 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00732 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99591 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47068 * 89.99254 * 17 15 13 19 19 H 1.48489 * 109.47141 * 209.99418 * 17 15 13 20 20 H 1.48499 * 109.47035 * 329.99763 * 17 15 13 21 21 N 1.31206 * 125.97173 * 179.68828 * 8 7 5 22 22 C 1.53004 * 109.47014 * 119.99450 * 2 1 3 23 23 H 1.09003 * 109.50775 * 300.08705 * 22 2 1 24 24 C 1.53096 * 109.50447 * 180.02562 * 22 2 1 25 25 N 1.47016 * 109.25942 * 183.21372 * 24 22 2 26 26 C 1.46896 * 111.00332 * 182.38961 * 25 24 22 27 27 C 1.47024 * 110.74959 * 58.61828 * 25 24 22 28 28 C 1.53100 * 109.25427 * 301.38569 * 27 25 24 29 29 O 1.43014 * 109.26048 * 56.85033 * 28 27 25 30 30 H 1.08992 * 109.47534 * 300.00293 * 1 2 3 31 31 H 1.09002 * 109.47142 * 60.00886 * 1 2 3 32 32 H 1.09006 * 109.46845 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99792 * 264.99784 * 4 2 1 34 34 H 0.96993 * 120.00444 * 359.97438 * 7 5 4 35 35 H 1.07994 * 126.06632 * 359.97438 * 9 8 7 36 36 H 1.08000 * 126.07122 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47892 * 245.00254 * 12 11 10 38 38 H 1.09000 * 109.46908 * 5.00047 * 12 11 10 39 39 H 0.96994 * 120.00612 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.51205 * 303.15477 * 24 22 2 41 41 H 1.09004 * 109.50767 * 63.28232 * 24 22 2 42 42 H 1.09005 * 109.46851 * 60.00856 * 26 25 24 43 43 H 1.09004 * 109.47340 * 180.02562 * 26 25 24 44 44 H 1.08991 * 109.47390 * 300.00368 * 26 25 24 45 45 H 1.08993 * 109.50322 * 181.45133 * 27 25 24 46 46 H 1.09002 * 109.53969 * 61.33941 * 27 25 24 47 47 H 1.09000 * 109.50921 * 296.90945 * 28 27 25 48 48 H 1.09001 * 109.50521 * 176.78202 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0183 -2.3570 6 8 1.8576 1.1613 -2.4118 7 7 2.5960 -0.6539 -3.4576 8 6 2.7295 0.0453 -4.6654 9 6 2.4340 1.4026 -4.8695 10 6 2.6953 1.6940 -6.1642 11 7 3.1398 0.5677 -6.7604 12 6 3.5376 0.4364 -8.1641 13 6 4.9383 -0.1146 -8.2400 14 1 5.4782 -0.3436 -7.3332 15 6 5.5306 -0.3252 -9.4670 16 7 4.8733 -0.0459 -10.5713 17 14 7.2665 -1.0089 -9.5610 18 1 7.2124 -2.4921 -9.6104 19 1 7.9345 -0.4969 -10.7844 20 1 8.0325 -0.5812 -8.3629 21 7 3.1582 -0.4528 -5.8010 22 6 2.0400 -0.7212 1.2493 23 1 1.6757 -0.2086 2.1397 24 6 3.5709 -0.7211 1.2505 25 7 4.0551 -1.4813 2.4119 26 6 5.5221 -1.4581 2.4820 27 6 3.5511 -2.8621 2.3775 28 6 2.0203 -2.8406 2.3650 29 8 1.5684 -2.0713 1.2473 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1524 34 1 2.8267 -1.5950 -3.4140 35 1 2.0638 2.0917 -4.1250 36 1 2.5704 2.6569 -6.6370 37 1 2.8527 -0.2409 -8.6742 38 1 3.5055 1.4146 -8.6438 39 1 5.2899 -0.1944 -11.4345 40 1 3.9357 -1.1849 0.3340 41 1 3.9348 0.3048 1.3096 42 1 5.8653 -0.4273 2.5715 43 1 5.8535 -2.0282 3.3500 44 1 5.9363 -1.9017 1.5767 45 1 3.9004 -3.3990 3.2593 46 1 3.9155 -3.3609 1.4794 47 1 1.6550 -2.3907 3.2882 48 1 1.6427 -3.8597 2.2819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159898256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:04 Heat of formation + Delta-G solvation = 21.573414 kcal Electronic energy + Delta-G solvation = -29246.400283 eV Core-core repulsion = 25145.863315 eV Total energy + Delta-G solvation = -4100.536968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82921 -40.29111 -39.32954 -36.44811 -35.60156 -34.55993 -33.35966 -31.93641 -30.75635 -29.89093 -29.21721 -29.01890 -26.59031 -25.02837 -24.47394 -23.31272 -22.23467 -21.28460 -20.65046 -20.25848 -19.78103 -18.09393 -17.18417 -16.74624 -16.55956 -16.40927 -15.79441 -15.53728 -15.31157 -15.24827 -15.12069 -14.69553 -14.38936 -14.24317 -14.02801 -13.81287 -13.42252 -12.99958 -12.79138 -12.73327 -12.40655 -12.29050 -12.25773 -12.19209 -11.92779 -11.79231 -11.67700 -11.22639 -11.02802 -10.96637 -10.87961 -10.39498 -10.24356 -10.07393 -10.03513 -9.64702 -9.46941 -9.21808 -8.86696 -8.61890 -8.06261 -7.37468 -6.22730 -4.27647 2.41823 2.70783 3.13466 3.24250 3.25235 3.29945 3.34442 3.35056 3.66368 3.88752 4.22994 4.30575 4.41370 4.43464 4.49803 4.65933 4.78157 4.84951 5.01913 5.05656 5.12289 5.13090 5.16374 5.22471 5.31280 5.38449 5.44894 5.51692 5.52385 5.60257 5.78334 5.85852 6.13301 6.27451 6.36513 6.43152 6.43854 6.57839 6.61974 6.73877 6.91070 7.05051 7.15412 7.54268 7.71603 7.85776 8.02489 8.10176 8.64629 8.69978 8.83213 9.37795 10.85951 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.002288 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.112959 B =12237.068731 C =13494.462138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 H 0.104 0.896 4 N -0.736 5.736 5 C 0.714 3.286 6 O -0.568 6.568 7 N -0.644 5.644 8 C 0.276 3.724 9 C -0.286 4.286 10 C 0.050 3.950 11 N -0.321 5.321 12 C 0.259 3.741 13 C -0.527 4.527 14 H 0.068 0.932 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.309 5.309 22 C 0.088 3.912 23 H 0.083 0.917 24 C 0.021 3.979 25 N -0.542 5.542 26 C 0.024 3.976 27 C 0.014 3.986 28 C 0.065 3.935 29 O -0.376 6.376 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.406 0.594 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -3.496 27.891 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.069 3.931 3 H 0.121 0.879 4 N -0.392 5.392 5 C 0.413 3.587 6 O -0.444 6.444 7 N -0.294 5.294 8 C 0.022 3.978 9 C -0.317 4.317 10 C -0.100 4.100 11 N -0.103 5.103 12 C 0.141 3.859 13 C -0.566 4.566 14 H 0.087 0.913 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.198 1.198 21 N -0.140 5.140 22 C 0.029 3.971 23 H 0.101 0.899 24 C -0.107 4.107 25 N -0.267 5.267 26 C -0.125 4.125 27 C -0.114 4.114 28 C -0.012 4.012 29 O -0.295 6.295 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.240 0.760 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.563 -3.300 27.205 27.963 hybrid contribution 1.510 -0.982 -0.293 1.825 sum -4.053 -4.282 26.912 27.550 Atomic orbital electron populations 1.22126 0.94385 1.02900 1.02561 1.20851 0.94904 0.96362 0.80990 0.87853 1.45041 1.71884 1.13929 1.08393 1.15634 0.78343 0.84943 0.79766 1.90859 1.55890 1.13925 1.83735 1.41397 1.68402 1.13276 1.06315 1.18788 1.01551 0.91568 0.85870 1.21509 1.17836 0.95461 0.96901 1.22556 1.00450 0.93188 0.93784 1.49044 1.46425 1.04660 1.10186 1.19722 0.96889 0.99283 0.69988 1.21262 0.98253 1.43782 0.93265 0.91337 1.24943 0.98753 0.95235 0.95179 1.69912 1.37824 1.47906 0.97753 0.86332 0.83347 0.79247 0.77591 1.20368 1.20991 1.19751 1.77320 1.26727 1.13754 0.96178 1.22520 0.92335 0.83981 0.98272 0.89909 1.22828 0.95803 0.99943 0.92109 1.62233 1.10325 1.12907 1.41222 1.22391 0.86500 1.02707 1.00855 1.22843 0.96798 0.89885 1.01908 1.22655 0.92318 0.96482 0.89727 1.87995 1.72737 1.22520 1.46225 0.91796 0.91547 0.91613 0.76581 0.75982 0.82167 0.81572 0.93783 0.92559 0.92347 0.93285 0.89319 0.90978 0.91157 0.95260 0.89627 0.93760 0.92168 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.34 37.16 0.35 -1.11 16 2 C 0.17 1.60 2.41 -67.93 -0.16 1.43 16 3 H 0.10 1.04 7.58 -51.93 -0.39 0.64 16 4 N -0.74 -7.73 4.31 -58.67 -0.25 -7.99 16 5 C 0.71 10.53 8.50 -86.91 -0.74 9.79 16 6 O -0.57 -10.08 13.13 5.29 0.07 -10.01 16 7 N -0.64 -10.25 5.46 -15.50 -0.08 -10.33 16 8 C 0.28 5.66 8.11 -154.36 -1.25 4.41 16 9 C -0.29 -5.79 9.61 -39.83 -0.38 -6.17 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 11 N -0.32 -7.59 3.67 -62.56 -0.23 -7.82 16 12 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 13 C -0.53 -14.79 9.23 -34.44 -0.32 -15.11 16 14 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 17 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 22 C 0.09 0.66 2.55 -26.68 -0.07 0.60 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 C 0.02 0.17 4.83 -3.71 -0.02 0.15 16 25 N -0.54 -4.00 4.99 -242.59 -1.21 -5.21 16 26 C 0.02 0.15 9.60 60.06 0.58 0.73 16 27 C 0.01 0.09 5.66 -3.70 -0.02 0.07 16 28 C 0.07 0.39 7.01 37.21 0.26 0.65 16 29 O -0.38 -2.98 9.31 -35.23 -0.33 -3.31 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.61 7.69 -51.93 -0.40 0.21 16 33 H 0.40 3.60 8.00 -40.82 -0.33 3.28 16 34 H 0.41 5.35 8.84 -40.82 -0.36 4.99 16 35 H 0.16 3.17 5.91 -52.49 -0.31 2.86 16 36 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 37 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 40 H 0.05 0.44 7.36 -51.93 -0.38 0.06 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -33.01 392.77 -9.75 -42.76 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.63 Total: 6.63 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.10 Total: 4.49 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.65 Total: -62.94 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.26 Total: -13.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.01 -9.75 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159898256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.329 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds