Wall clock time and date at job start Tue Mar 31 2020 19:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46845 * 2 1 4 4 N 1.46500 * 109.47367 * 239.99591 * 2 1 3 5 5 C 1.34774 * 119.99683 * 85.00391 * 4 2 1 6 6 O 1.21590 * 120.00196 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99519 * 180.02562 * 5 4 2 8 8 C 1.40197 * 119.99668 * 179.97438 * 7 5 4 9 9 C 1.40402 * 125.97202 * 0.02562 * 8 7 5 10 10 C 1.35248 * 107.86677 * 179.97438 * 9 8 7 11 11 N 1.34967 * 107.85875 * 359.97438 * 10 9 8 12 12 C 1.46494 * 125.97930 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47077 * 124.99993 * 12 11 10 14 14 H 1.07992 * 119.99778 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99526 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00732 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99591 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47068 * 89.99254 * 17 15 13 19 19 H 1.48489 * 109.47141 * 209.99418 * 17 15 13 20 20 H 1.48499 * 109.47035 * 329.99763 * 17 15 13 21 21 N 1.31206 * 125.97173 * 179.68828 * 8 7 5 22 22 C 1.53004 * 109.47014 * 119.99450 * 2 1 3 23 23 H 1.09003 * 109.50775 * 300.08705 * 22 2 1 24 24 C 1.53096 * 109.50447 * 180.02562 * 22 2 1 25 25 N 1.47016 * 109.25942 * 183.21372 * 24 22 2 26 26 C 1.46896 * 111.00332 * 182.38961 * 25 24 22 27 27 C 1.47024 * 110.74959 * 58.61828 * 25 24 22 28 28 C 1.53100 * 109.25427 * 301.38569 * 27 25 24 29 29 O 1.43014 * 109.26048 * 56.85033 * 28 27 25 30 30 H 1.08992 * 109.47534 * 300.00293 * 1 2 3 31 31 H 1.09002 * 109.47142 * 60.00886 * 1 2 3 32 32 H 1.09006 * 109.46845 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99792 * 264.99784 * 4 2 1 34 34 H 0.96993 * 120.00444 * 359.97438 * 7 5 4 35 35 H 1.07994 * 126.06632 * 359.97438 * 9 8 7 36 36 H 1.08000 * 126.07122 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47892 * 245.00254 * 12 11 10 38 38 H 1.09000 * 109.46908 * 5.00047 * 12 11 10 39 39 H 0.96994 * 120.00612 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.51205 * 303.15477 * 24 22 2 41 41 H 1.09004 * 109.50767 * 63.28232 * 24 22 2 42 42 H 1.09005 * 109.46851 * 60.00856 * 26 25 24 43 43 H 1.09004 * 109.47340 * 180.02562 * 26 25 24 44 44 H 1.08991 * 109.47390 * 300.00368 * 26 25 24 45 45 H 1.08993 * 109.50322 * 181.45133 * 27 25 24 46 46 H 1.09002 * 109.53969 * 61.33941 * 27 25 24 47 47 H 1.09000 * 109.50921 * 296.90945 * 28 27 25 48 48 H 1.09001 * 109.50521 * 176.78202 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0183 -2.3570 6 8 1.8576 1.1613 -2.4118 7 7 2.5960 -0.6539 -3.4576 8 6 2.7295 0.0453 -4.6654 9 6 2.4340 1.4026 -4.8695 10 6 2.6953 1.6940 -6.1642 11 7 3.1398 0.5677 -6.7604 12 6 3.5376 0.4364 -8.1641 13 6 4.9383 -0.1146 -8.2400 14 1 5.4782 -0.3436 -7.3332 15 6 5.5306 -0.3252 -9.4670 16 7 4.8733 -0.0459 -10.5713 17 14 7.2665 -1.0089 -9.5610 18 1 7.2124 -2.4921 -9.6104 19 1 7.9345 -0.4969 -10.7844 20 1 8.0325 -0.5812 -8.3629 21 7 3.1582 -0.4528 -5.8010 22 6 2.0400 -0.7212 1.2493 23 1 1.6757 -0.2086 2.1397 24 6 3.5709 -0.7211 1.2505 25 7 4.0551 -1.4813 2.4119 26 6 5.5221 -1.4581 2.4820 27 6 3.5511 -2.8621 2.3775 28 6 2.0203 -2.8406 2.3650 29 8 1.5684 -2.0713 1.2473 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1524 34 1 2.8267 -1.5950 -3.4140 35 1 2.0638 2.0917 -4.1250 36 1 2.5704 2.6569 -6.6370 37 1 2.8527 -0.2409 -8.6742 38 1 3.5055 1.4146 -8.6438 39 1 5.2899 -0.1944 -11.4345 40 1 3.9357 -1.1849 0.3340 41 1 3.9348 0.3048 1.3096 42 1 5.8653 -0.4273 2.5715 43 1 5.8535 -2.0282 3.3500 44 1 5.9363 -1.9017 1.5767 45 1 3.9004 -3.3990 3.2593 46 1 3.9155 -3.3609 1.4794 47 1 1.6550 -2.3907 3.2882 48 1 1.6427 -3.8597 2.2819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159898256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:03 Heat of formation + Delta-G solvation = -2.132797 kcal Electronic energy + Delta-G solvation = -29247.428261 eV Core-core repulsion = 25145.863315 eV Total energy + Delta-G solvation = -4101.564946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23212 -41.29335 -40.38376 -37.21272 -36.42645 -35.96930 -35.27267 -33.17560 -32.11547 -30.95180 -30.60867 -29.59247 -28.49368 -25.72894 -25.08640 -24.96482 -23.53291 -22.23088 -21.87741 -21.26477 -21.14128 -19.31585 -18.69028 -18.28421 -17.69808 -17.30104 -16.87270 -16.67815 -16.38026 -16.11683 -15.96448 -15.86271 -15.76655 -15.40192 -15.20764 -14.76182 -14.49092 -14.27153 -14.15112 -13.79801 -13.76932 -13.55144 -13.30092 -13.05508 -12.91680 -12.81630 -12.74347 -12.56229 -12.33029 -12.28946 -12.05676 -11.85885 -11.63369 -11.55093 -11.38280 -11.09050 -10.72323 -10.63706 -10.21241 -9.71435 -9.44972 -9.04056 -8.32600 -6.46858 1.08191 1.15375 1.37682 1.38493 1.50016 1.72231 2.11957 2.35868 2.42235 2.68756 2.78691 2.98730 3.16188 3.63645 3.82014 3.98529 3.99706 4.10379 4.21025 4.28553 4.30913 4.37980 4.45661 4.54675 4.62961 4.63807 4.75968 4.77566 4.80631 4.89142 4.91301 4.95913 4.96500 4.98751 5.00543 5.05234 5.17451 5.38397 5.52832 5.57249 5.76522 5.86407 5.88767 5.92085 5.99011 6.17049 6.30616 6.64157 6.76543 7.15644 7.23005 7.44558 8.74848 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.002288 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.112959 B =12237.068731 C =13494.462138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.097 0.903 4 N -0.715 5.715 5 C 0.714 3.286 6 O -0.597 6.597 7 N -0.639 5.639 8 C 0.285 3.715 9 C -0.291 4.291 10 C 0.056 3.944 11 N -0.346 5.346 12 C 0.273 3.727 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.018 3.982 16 N -0.921 5.921 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.272 1.272 20 H -0.273 1.273 21 N -0.349 5.349 22 C 0.099 3.901 23 H 0.096 0.904 24 C 0.023 3.977 25 N -0.547 5.547 26 C 0.023 3.977 27 C 0.013 3.987 28 C 0.063 3.937 29 O -0.388 6.388 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.418 0.582 35 H 0.168 0.832 36 H 0.201 0.799 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.273 0.727 40 H 0.035 0.965 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.021 0.979 45 H 0.101 0.899 46 H 0.035 0.965 47 H 0.067 0.933 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 -3.969 29.846 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.068 3.932 3 H 0.114 0.886 4 N -0.371 5.371 5 C 0.414 3.586 6 O -0.475 6.475 7 N -0.290 5.290 8 C 0.030 3.970 9 C -0.322 4.322 10 C -0.093 4.093 11 N -0.128 5.128 12 C 0.154 3.846 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.182 4.182 16 N -0.559 5.559 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.198 1.198 21 N -0.180 5.180 22 C 0.040 3.960 23 H 0.113 0.887 24 C -0.106 4.106 25 N -0.272 5.272 26 C -0.125 4.125 27 C -0.115 4.115 28 C -0.013 4.013 29 O -0.307 6.307 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.255 0.745 35 H 0.185 0.815 36 H 0.218 0.782 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.040 0.960 45 H 0.119 0.881 46 H 0.054 0.946 47 H 0.085 0.915 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.234 -3.807 29.217 29.925 hybrid contribution 1.335 -0.841 -0.743 1.744 sum -3.900 -4.648 28.474 29.113 Atomic orbital electron populations 1.22057 0.93956 1.02820 1.02445 1.20992 0.95152 0.96223 0.80858 0.88556 1.44956 1.70526 1.14258 1.07404 1.15754 0.77988 0.84683 0.80223 1.90830 1.57120 1.15294 1.84237 1.41419 1.68455 1.13817 1.05311 1.19086 0.99530 0.92010 0.86422 1.21686 1.17949 0.95572 0.97015 1.23164 0.98675 0.93594 0.93847 1.48814 1.48416 1.05834 1.09721 1.19325 0.95357 0.98509 0.71403 1.21399 0.99405 1.44713 0.92979 0.93007 1.25741 1.02629 0.95199 0.94670 1.69989 1.39422 1.48267 0.98266 0.85347 0.78553 0.78657 0.77848 1.19810 1.19642 1.19751 1.77241 1.28974 1.14681 0.97154 1.22371 0.91974 0.84131 0.97518 0.88653 1.22786 0.96027 0.99887 0.91892 1.62273 1.10757 1.13546 1.40616 1.22425 0.86097 1.02945 1.01034 1.22907 0.97059 0.89289 1.02215 1.22816 0.92065 0.97107 0.89328 1.87975 1.72929 1.22541 1.47266 0.89723 0.93844 0.91593 0.75405 0.74532 0.81456 0.78227 0.96134 0.92346 0.91833 0.94629 0.89504 0.90932 0.89881 0.96046 0.88113 0.94632 0.91521 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.34 71.98 0.67 -1.91 16 2 C 0.17 2.94 2.41 44.99 0.11 3.05 16 3 H 0.10 1.84 7.58 -2.38 -0.02 1.82 16 4 N -0.72 -14.34 4.31 -457.80 -1.97 -16.31 16 5 C 0.71 20.65 8.50 179.05 1.52 22.17 16 6 O -0.60 -20.93 13.13 -4.00 -0.05 -20.98 16 7 N -0.64 -20.08 5.46 -321.22 -1.75 -21.83 16 8 C 0.29 11.69 8.11 133.31 1.08 12.78 16 9 C -0.29 -11.69 9.61 22.11 0.21 -11.47 16 10 C 0.06 2.25 11.44 83.52 0.96 3.20 16 11 N -0.35 -16.59 3.67 -351.84 -1.29 -17.88 16 12 C 0.27 14.38 6.26 85.64 0.54 14.91 16 13 C -0.55 -31.22 9.23 25.60 0.24 -30.98 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.02 1.00 5.46 84.66 0.46 1.46 16 16 N -0.92 -52.58 13.29 21.45 0.28 -52.29 16 17 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 N -0.35 -16.61 12.42 -54.43 -0.68 -17.28 16 22 C 0.10 1.32 2.55 30.63 0.08 1.40 16 23 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 24 C 0.02 0.33 4.83 86.31 0.42 0.75 16 25 N -0.55 -7.17 4.99 -921.41 -4.59 -11.76 16 26 C 0.02 0.27 9.60 127.69 1.23 1.50 16 27 C 0.01 0.14 5.66 86.31 0.49 0.63 16 28 C 0.06 0.61 7.01 72.02 0.50 1.11 16 29 O -0.39 -5.33 9.31 -148.98 -1.39 -6.72 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.11 7.69 -2.38 -0.02 1.09 16 33 H 0.41 6.86 8.00 -92.71 -0.74 6.12 16 34 H 0.42 10.83 8.84 -92.71 -0.82 10.01 16 35 H 0.17 6.53 5.91 -2.91 -0.02 6.51 16 36 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 39 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.04 0.61 7.36 -2.39 -0.02 0.59 16 41 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.12 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -70.85 392.77 -1.49 -72.35 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.58 Total: 28.18 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 8.50 Total: 18.59 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -10.00 Total: -137.36 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -1.44 Total: -27.70 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.85 -1.49 -72.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159898256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.215 kcal (2) G-P(sol) polarization free energy of solvation -70.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds