Wall clock time and date at job start Tue Mar 31 2020 19:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47035 * 2 1 4 4 N 1.46501 * 109.47208 * 119.99783 * 2 1 3 5 5 C 1.34778 * 120.00114 * 275.00409 * 4 2 1 6 6 O 1.21589 * 119.99759 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00263 * 179.97438 * 5 4 2 8 8 C 1.40199 * 120.00135 * 179.97438 * 7 5 4 9 9 C 1.40403 * 125.96893 * 0.02562 * 8 7 5 10 10 C 1.35242 * 107.86353 * 179.97438 * 9 8 7 11 11 N 1.34964 * 107.85942 * 0.02562 * 10 9 8 12 12 C 1.46498 * 125.97605 * 179.73522 * 11 10 9 13 13 C 1.50708 * 109.47166 * 124.99815 * 12 11 10 14 14 H 1.07998 * 119.99960 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99928 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00085 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99823 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 60.00302 * 17 15 13 19 19 H 1.48501 * 109.46800 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47293 * 300.00041 * 17 15 13 21 21 N 1.31209 * 125.97168 * 179.97438 * 8 7 5 22 22 C 1.53003 * 109.47447 * 239.99743 * 2 1 3 23 23 H 1.08996 * 109.50943 * 185.00209 * 22 2 1 24 24 C 1.53099 * 109.50528 * 64.91264 * 22 2 1 25 25 N 1.47013 * 109.25357 * 183.26586 * 24 22 2 26 26 C 1.46906 * 110.99792 * 182.35316 * 25 24 22 27 27 C 1.47012 * 110.79347 * 58.54683 * 25 24 22 28 28 C 1.53093 * 109.26074 * 301.41090 * 27 25 24 29 29 O 1.43011 * 109.25727 * 56.84222 * 28 27 25 30 30 H 1.09008 * 109.46896 * 60.00335 * 1 2 3 31 31 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47379 * 300.00585 * 1 2 3 33 33 H 0.97001 * 120.00093 * 94.99668 * 4 2 1 34 34 H 0.97001 * 119.99944 * 359.97438 * 7 5 4 35 35 H 1.07997 * 126.07030 * 0.02562 * 9 8 7 36 36 H 1.07999 * 126.06962 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47464 * 244.99800 * 12 11 10 38 38 H 1.09002 * 109.47377 * 5.00227 * 12 11 10 39 39 H 0.97005 * 119.99940 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.50537 * 303.15039 * 24 22 2 41 41 H 1.09001 * 109.50652 * 63.28580 * 24 22 2 42 42 H 1.09002 * 109.46820 * 300.26873 * 26 25 24 43 43 H 1.08996 * 109.47052 * 60.27226 * 26 25 24 44 44 H 1.08998 * 109.47347 * 180.27169 * 26 25 24 45 45 H 1.09004 * 109.50896 * 181.46834 * 27 25 24 46 46 H 1.09003 * 109.50315 * 61.34406 * 27 25 24 47 47 H 1.09000 * 109.50561 * 296.90686 * 28 27 25 48 48 H 1.09002 * 109.51084 * 176.77856 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1616 2.4116 7 7 2.5957 -0.6536 3.4578 8 6 2.7301 0.0460 4.6653 9 6 2.4345 1.4033 4.8693 10 6 2.6957 1.6948 6.1639 11 7 3.1402 0.5685 6.7601 12 6 3.5435 0.4389 8.1625 13 6 2.7579 -0.6721 8.8105 14 1 2.0312 -1.2264 8.2351 15 6 2.9676 -0.9815 10.1377 16 7 3.8529 -0.3068 10.8383 17 14 1.9944 -2.3590 10.9407 18 1 2.2617 -3.6343 10.2284 19 1 2.4031 -2.4903 12.3623 20 1 0.5442 -2.0470 10.8699 21 7 3.1530 -0.4536 5.8025 22 6 2.0400 -0.7213 -1.2492 23 1 3.1263 -0.7999 -1.2061 24 6 1.6336 0.0676 -2.4968 25 7 2.0578 -0.6695 -3.6960 26 6 1.7356 0.0814 -4.9168 27 6 1.4529 -2.0091 -3.7263 28 6 1.8620 -2.7766 -2.4664 29 8 1.4686 -2.0309 -1.3113 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1527 34 1 2.8258 -1.5949 3.4144 35 1 2.0637 2.0922 4.1248 36 1 2.5707 2.6577 6.6366 37 1 4.6078 0.2096 8.2149 38 1 3.3473 1.3751 8.6851 39 1 4.0002 -0.5243 11.7721 40 1 0.5509 0.1929 -2.5114 41 1 2.1138 1.0460 -2.4812 42 1 0.6597 0.2489 -4.9670 43 1 2.2524 1.0409 -4.9002 44 1 2.0557 -0.4886 -5.7891 45 1 1.8013 -2.5459 -4.6087 46 1 0.3673 -1.9176 -3.7603 47 1 2.9432 -2.9149 -2.4595 48 1 1.3700 -3.7492 -2.4567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159898405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:06 Heat of formation + Delta-G solvation = 22.463999 kcal Electronic energy + Delta-G solvation = -28856.256618 eV Core-core repulsion = 24755.758269 eV Total energy + Delta-G solvation = -4100.498349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79393 -40.31063 -39.37324 -36.47924 -35.60548 -34.54362 -33.35456 -32.22293 -30.75944 -29.79819 -29.21825 -28.61581 -26.59961 -25.37737 -24.62305 -23.26354 -22.31003 -21.22406 -20.52820 -20.29678 -19.72047 -18.04029 -17.09637 -16.74744 -16.53885 -16.42581 -16.02966 -15.54830 -15.45807 -15.29167 -15.17603 -14.70062 -14.27351 -14.19285 -14.08324 -13.85582 -13.27279 -13.18382 -12.90375 -12.76118 -12.45584 -12.30418 -12.23542 -12.15775 -11.89152 -11.75326 -11.68786 -11.21654 -11.03909 -10.96843 -10.83592 -10.38820 -10.22098 -10.11306 -10.01506 -9.63689 -9.46262 -9.20147 -8.93169 -8.59548 -8.04643 -7.35872 -6.20859 -4.25772 2.40028 2.71950 3.15229 3.22022 3.28041 3.30979 3.31855 3.35853 3.67155 3.90302 4.26117 4.32999 4.36459 4.43647 4.51089 4.61081 4.67737 4.80107 4.93805 5.00782 5.03989 5.12851 5.14083 5.15797 5.28339 5.34005 5.36072 5.50572 5.51964 5.59849 5.79686 5.87610 6.14132 6.28226 6.35253 6.37378 6.40231 6.59389 6.63751 6.72692 6.92400 7.06514 7.16953 7.55788 7.73254 7.87573 8.04164 8.11896 8.65852 8.71674 8.84764 9.39569 10.87699 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.001876 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.377341 B =14919.156200 C =15530.726421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.176 3.824 3 H 0.103 0.897 4 N -0.736 5.736 5 C 0.715 3.285 6 O -0.569 6.569 7 N -0.644 5.644 8 C 0.276 3.724 9 C -0.286 4.286 10 C 0.050 3.950 11 N -0.321 5.321 12 C 0.259 3.741 13 C -0.528 4.528 14 H 0.068 0.932 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 N -0.308 5.308 22 C 0.086 3.914 23 H 0.076 0.924 24 C 0.024 3.976 25 N -0.543 5.543 26 C 0.025 3.975 27 C 0.016 3.984 28 C 0.064 3.936 29 O -0.375 6.375 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.401 0.599 34 H 0.407 0.593 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.321 -1.144 -31.056 31.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.121 0.879 4 N -0.393 5.393 5 C 0.414 3.586 6 O -0.445 6.445 7 N -0.293 5.293 8 C 0.022 3.978 9 C -0.317 4.317 10 C -0.100 4.100 11 N -0.103 5.103 12 C 0.141 3.859 13 C -0.566 4.566 14 H 0.086 0.914 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 N -0.139 5.139 22 C 0.027 3.973 23 H 0.094 0.906 24 C -0.104 4.104 25 N -0.267 5.267 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.013 4.013 29 O -0.294 6.294 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.241 0.759 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.656 -1.211 -29.937 30.184 hybrid contribution -1.236 -0.797 -0.216 1.487 sum -4.893 -2.008 -30.154 30.614 Atomic orbital electron populations 1.22177 0.94721 1.02913 1.02331 1.20746 0.94859 0.96342 0.81087 0.87903 1.44991 1.71954 1.13969 1.08346 1.15611 0.78302 0.84926 0.79760 1.90856 1.55914 1.13952 1.83761 1.41385 1.68342 1.13300 1.06300 1.18787 1.01856 0.91430 0.85687 1.21508 1.17713 0.95564 0.96960 1.22549 1.00563 0.93250 0.93617 1.49039 1.46898 1.04308 1.10040 1.19720 0.97045 0.99381 0.69716 1.21231 1.22626 1.17294 0.95484 0.91365 1.24943 0.95390 0.96910 0.96849 1.69912 1.33542 1.40650 1.09299 0.86387 0.80143 0.82003 0.77950 1.19960 1.21076 1.20068 1.77325 1.27494 1.13226 0.95902 1.22442 0.98055 0.83308 0.93462 0.90629 1.22807 0.99857 0.98020 0.89758 1.62160 1.58978 1.03023 1.02579 1.22387 0.99117 0.98947 0.91889 1.22830 0.97873 0.90649 0.99905 1.22662 1.00314 0.94496 0.83853 1.88012 1.71467 1.26504 1.43403 0.92015 0.91549 0.91590 0.76477 0.75869 0.82183 0.81585 0.93781 0.92566 0.92317 0.92972 0.89158 0.95372 0.90943 0.91123 0.89597 0.93796 0.92124 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.04 37.15 0.34 -1.20 16 2 C 0.18 1.64 2.45 -67.93 -0.17 1.47 16 3 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 4 N -0.74 -7.87 5.06 -58.67 -0.30 -8.17 16 5 C 0.71 10.69 8.50 -86.92 -0.74 9.95 16 6 O -0.57 -10.21 13.13 5.29 0.07 -10.14 16 7 N -0.64 -10.30 5.46 -15.50 -0.08 -10.39 16 8 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 9 C -0.29 -5.82 9.61 -39.83 -0.38 -6.20 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 11 N -0.32 -7.60 3.67 -62.56 -0.23 -7.83 16 12 C 0.26 6.67 6.26 -5.19 -0.03 6.64 16 13 C -0.53 -14.86 9.24 -34.44 -0.32 -15.18 16 14 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 17 Si 0.91 21.57 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 N -0.31 -7.23 12.43 31.44 0.39 -6.84 16 22 C 0.09 0.66 2.63 -26.68 -0.07 0.59 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 C 0.02 0.16 4.77 -3.71 -0.02 0.15 16 25 N -0.54 -3.57 4.98 -242.59 -1.21 -4.78 16 26 C 0.02 0.12 9.61 60.07 0.58 0.70 16 27 C 0.02 0.09 5.66 -3.72 -0.02 0.07 16 28 C 0.06 0.38 7.01 37.21 0.26 0.64 16 29 O -0.38 -3.01 9.33 -35.23 -0.33 -3.34 16 30 H 0.06 0.48 6.50 -51.92 -0.34 0.14 16 31 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 3.53 8.40 -40.82 -0.34 3.18 16 34 H 0.41 5.36 8.84 -40.82 -0.36 4.99 16 35 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 36 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 37 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.05 0.36 6.43 -51.93 -0.33 0.03 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -33.39 390.99 -9.71 -43.09 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.51 Total: 6.23 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.12 Total: 4.51 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.69 Total: -62.80 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.26 Total: -13.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.39 -9.71 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159898405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.558 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds