Wall clock time and date at job start Tue Mar 31 2020 19:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47035 * 2 1 4 4 N 1.46501 * 109.47208 * 119.99783 * 2 1 3 5 5 C 1.34778 * 120.00114 * 275.00409 * 4 2 1 6 6 O 1.21589 * 119.99759 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00263 * 179.97438 * 5 4 2 8 8 C 1.40199 * 120.00135 * 179.97438 * 7 5 4 9 9 C 1.40403 * 125.96893 * 0.02562 * 8 7 5 10 10 C 1.35242 * 107.86353 * 179.97438 * 9 8 7 11 11 N 1.34964 * 107.85942 * 0.02562 * 10 9 8 12 12 C 1.46498 * 125.97605 * 179.73522 * 11 10 9 13 13 C 1.50708 * 109.47166 * 124.99815 * 12 11 10 14 14 H 1.07998 * 119.99960 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99928 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00085 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99823 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 60.00302 * 17 15 13 19 19 H 1.48501 * 109.46800 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47293 * 300.00041 * 17 15 13 21 21 N 1.31209 * 125.97168 * 179.97438 * 8 7 5 22 22 C 1.53003 * 109.47447 * 239.99743 * 2 1 3 23 23 H 1.08996 * 109.50943 * 185.00209 * 22 2 1 24 24 C 1.53099 * 109.50528 * 64.91264 * 22 2 1 25 25 N 1.47013 * 109.25357 * 183.26586 * 24 22 2 26 26 C 1.46906 * 110.99792 * 182.35316 * 25 24 22 27 27 C 1.47012 * 110.79347 * 58.54683 * 25 24 22 28 28 C 1.53093 * 109.26074 * 301.41090 * 27 25 24 29 29 O 1.43011 * 109.25727 * 56.84222 * 28 27 25 30 30 H 1.09008 * 109.46896 * 60.00335 * 1 2 3 31 31 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47379 * 300.00585 * 1 2 3 33 33 H 0.97001 * 120.00093 * 94.99668 * 4 2 1 34 34 H 0.97001 * 119.99944 * 359.97438 * 7 5 4 35 35 H 1.07997 * 126.07030 * 0.02562 * 9 8 7 36 36 H 1.07999 * 126.06962 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47464 * 244.99800 * 12 11 10 38 38 H 1.09002 * 109.47377 * 5.00227 * 12 11 10 39 39 H 0.97005 * 119.99940 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.50537 * 303.15039 * 24 22 2 41 41 H 1.09001 * 109.50652 * 63.28580 * 24 22 2 42 42 H 1.09002 * 109.46820 * 300.26873 * 26 25 24 43 43 H 1.08996 * 109.47052 * 60.27226 * 26 25 24 44 44 H 1.08998 * 109.47347 * 180.27169 * 26 25 24 45 45 H 1.09004 * 109.50896 * 181.46834 * 27 25 24 46 46 H 1.09003 * 109.50315 * 61.34406 * 27 25 24 47 47 H 1.09000 * 109.50561 * 296.90686 * 28 27 25 48 48 H 1.09002 * 109.51084 * 176.77856 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1616 2.4116 7 7 2.5957 -0.6536 3.4578 8 6 2.7301 0.0460 4.6653 9 6 2.4345 1.4033 4.8693 10 6 2.6957 1.6948 6.1639 11 7 3.1402 0.5685 6.7601 12 6 3.5435 0.4389 8.1625 13 6 2.7579 -0.6721 8.8105 14 1 2.0312 -1.2264 8.2351 15 6 2.9676 -0.9815 10.1377 16 7 3.8529 -0.3068 10.8383 17 14 1.9944 -2.3590 10.9407 18 1 2.2617 -3.6343 10.2284 19 1 2.4031 -2.4903 12.3623 20 1 0.5442 -2.0470 10.8699 21 7 3.1530 -0.4536 5.8025 22 6 2.0400 -0.7213 -1.2492 23 1 3.1263 -0.7999 -1.2061 24 6 1.6336 0.0676 -2.4968 25 7 2.0578 -0.6695 -3.6960 26 6 1.7356 0.0814 -4.9168 27 6 1.4529 -2.0091 -3.7263 28 6 1.8620 -2.7766 -2.4664 29 8 1.4686 -2.0309 -1.3113 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1527 34 1 2.8258 -1.5949 3.4144 35 1 2.0637 2.0922 4.1248 36 1 2.5707 2.6577 6.6366 37 1 4.6078 0.2096 8.2149 38 1 3.3473 1.3751 8.6851 39 1 4.0002 -0.5243 11.7721 40 1 0.5509 0.1929 -2.5114 41 1 2.1138 1.0460 -2.4812 42 1 0.6597 0.2489 -4.9670 43 1 2.2524 1.0409 -4.9002 44 1 2.0557 -0.4886 -5.7891 45 1 1.8013 -2.5459 -4.6087 46 1 0.3673 -1.9176 -3.7603 47 1 2.9432 -2.9149 -2.4595 48 1 1.3700 -3.7492 -2.4567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159898405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:05 Heat of formation + Delta-G solvation = -2.005600 kcal Electronic energy + Delta-G solvation = -28857.317699 eV Core-core repulsion = 24755.758269 eV Total energy + Delta-G solvation = -4101.559431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.21547 -41.25244 -40.44593 -37.21620 -36.40564 -35.95821 -35.26206 -33.32979 -32.29306 -30.91714 -30.40869 -29.22868 -28.47732 -26.12914 -25.11480 -24.95739 -23.49058 -22.30751 -21.73254 -21.36956 -20.96443 -19.24420 -18.67548 -18.26208 -17.60722 -17.25953 -16.97379 -16.61979 -16.56941 -16.17669 -16.02632 -15.90340 -15.63581 -15.55264 -15.06567 -14.74894 -14.46757 -14.28736 -13.98040 -13.92223 -13.77452 -13.61208 -13.33727 -12.96028 -12.91837 -12.79568 -12.71240 -12.55441 -12.28017 -12.24967 -12.05355 -11.86136 -11.61856 -11.55933 -11.37820 -11.08923 -10.70572 -10.64506 -10.22387 -9.70092 -9.39873 -9.02897 -8.31143 -6.45338 1.09701 1.14604 1.39083 1.41090 1.49943 1.73071 2.11014 2.37031 2.43003 2.68425 2.82830 3.00180 3.17551 3.70435 3.83708 3.99574 4.00854 4.03383 4.16671 4.27732 4.30910 4.37030 4.42772 4.59268 4.63256 4.65819 4.74084 4.78564 4.80476 4.87700 4.90591 4.97269 4.98167 5.00622 5.02307 5.05960 5.18102 5.36334 5.51678 5.58293 5.78190 5.89788 5.90909 5.95604 6.00224 6.16632 6.31923 6.65385 6.78199 7.17266 7.24357 7.45098 8.75947 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.001876 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.377341 B =14919.156200 C =15530.726421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 H 0.097 0.903 4 N -0.717 5.717 5 C 0.714 3.286 6 O -0.598 6.598 7 N -0.637 5.637 8 C 0.285 3.715 9 C -0.292 4.292 10 C 0.056 3.944 11 N -0.345 5.345 12 C 0.273 3.727 13 C -0.548 4.548 14 H 0.052 0.948 15 C 0.018 3.982 16 N -0.920 5.920 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.270 1.270 21 N -0.349 5.349 22 C 0.096 3.904 23 H 0.074 0.926 24 C 0.026 3.974 25 N -0.554 5.554 26 C 0.024 3.976 27 C 0.016 3.984 28 C 0.060 3.940 29 O -0.388 6.388 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.413 0.587 34 H 0.420 0.580 35 H 0.168 0.832 36 H 0.201 0.799 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.272 0.728 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.029 0.971 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.040 0.960 47 H 0.061 0.939 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 -1.816 -32.638 33.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.069 3.931 3 H 0.115 0.885 4 N -0.373 5.373 5 C 0.414 3.586 6 O -0.476 6.476 7 N -0.289 5.289 8 C 0.030 3.970 9 C -0.323 4.323 10 C -0.093 4.093 11 N -0.127 5.127 12 C 0.154 3.846 13 C -0.586 4.586 14 H 0.070 0.930 15 C -0.182 4.182 16 N -0.559 5.559 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.195 1.195 21 N -0.180 5.180 22 C 0.037 3.963 23 H 0.092 0.908 24 C -0.102 4.102 25 N -0.279 5.279 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.016 4.016 29 O -0.307 6.307 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.249 0.751 34 H 0.257 0.743 35 H 0.185 0.815 36 H 0.218 0.782 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.394 -1.912 -31.584 31.945 hybrid contribution -1.015 -0.574 0.100 1.170 sum -5.409 -2.487 -31.484 32.042 Atomic orbital electron populations 1.22091 0.94541 1.02635 1.02057 1.20867 0.94896 0.96280 0.81059 0.88515 1.44909 1.70598 1.14420 1.07337 1.15740 0.77957 0.84674 0.80243 1.90827 1.57139 1.15351 1.84275 1.41399 1.68372 1.13867 1.05265 1.19083 0.99840 0.91870 0.86249 1.21687 1.17844 0.95690 0.97082 1.23155 0.98791 0.93652 0.93660 1.48805 1.48896 1.05453 1.09561 1.19328 0.95406 0.98742 0.71134 1.21380 1.22939 1.18230 0.96066 0.92988 1.25737 0.96210 0.99076 0.97182 1.69991 1.34374 1.41770 1.09732 0.85409 0.78825 0.78857 0.77379 1.19870 1.19768 1.19531 1.77245 1.29722 1.14181 0.96862 1.22266 0.97706 0.83447 0.92856 0.90819 1.22766 0.99799 0.98133 0.89550 1.62184 1.59301 1.03517 1.02884 1.22425 0.99245 0.99120 0.91545 1.22857 0.97611 0.90377 1.00305 1.22824 1.00571 0.94928 0.83311 1.87987 1.71685 1.26569 1.44509 0.90210 0.91740 0.93921 0.75081 0.74338 0.81489 0.78240 0.96087 0.92336 0.91860 0.93088 0.88641 0.95284 0.90663 0.90211 0.88186 0.94190 0.92083 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.04 71.98 0.65 -2.11 16 2 C 0.17 3.05 2.45 44.99 0.11 3.16 16 3 H 0.10 1.88 7.58 -2.38 -0.02 1.86 16 4 N -0.72 -14.51 5.06 -457.81 -2.32 -16.83 16 5 C 0.71 20.82 8.50 179.05 1.52 22.35 16 6 O -0.60 -21.15 13.13 -3.99 -0.05 -21.20 16 7 N -0.64 -20.04 5.46 -321.23 -1.75 -21.80 16 8 C 0.29 11.71 8.11 133.31 1.08 12.79 16 9 C -0.29 -11.74 9.61 22.11 0.21 -11.53 16 10 C 0.06 2.26 11.44 83.52 0.96 3.21 16 11 N -0.35 -16.55 3.67 -351.84 -1.29 -17.84 16 12 C 0.27 14.37 6.26 85.64 0.54 14.91 16 13 C -0.55 -31.33 9.24 25.60 0.24 -31.09 16 14 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 15 C 0.02 1.02 5.46 84.66 0.46 1.49 16 16 N -0.92 -52.56 13.29 21.45 0.28 -52.27 16 17 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 N -0.35 -16.59 12.43 -54.43 -0.68 -17.27 16 22 C 0.10 1.33 2.63 30.63 0.08 1.41 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 C 0.03 0.31 4.77 86.31 0.41 0.72 16 25 N -0.55 -6.25 4.98 -921.42 -4.59 -10.84 16 26 C 0.02 0.20 9.61 127.69 1.23 1.43 16 27 C 0.02 0.15 5.66 86.31 0.49 0.64 16 28 C 0.06 0.60 7.01 72.01 0.50 1.11 16 29 O -0.39 -5.55 9.33 -148.98 -1.39 -6.94 16 30 H 0.08 1.12 6.50 -2.38 -0.02 1.11 16 31 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.41 6.62 8.40 -92.71 -0.78 5.84 16 34 H 0.42 10.74 8.84 -92.71 -0.82 9.92 16 35 H 0.17 6.53 5.91 -2.91 -0.02 6.51 16 36 H 0.20 6.39 8.06 -2.91 -0.02 6.36 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 39 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 40 H 0.05 0.62 6.43 -2.39 -0.02 0.60 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.43 390.99 -1.89 -73.32 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.61 Total: 27.12 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 8.48 Total: 18.48 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -10.34 Total: -136.85 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.44 Total: -28.13 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -71.43 -1.89 -73.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159898405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.317 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds