Wall clock time and date at job start Tue Mar 31 2020 19:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 5 5 C 1.34771 * 119.99635 * 85.00546 * 4 2 1 6 6 O 1.21599 * 120.00455 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99851 * 179.97438 * 5 4 2 8 8 C 1.40195 * 119.99809 * 179.97438 * 7 5 4 9 9 C 1.40396 * 125.97601 * 359.72195 * 8 7 5 10 10 C 1.35248 * 107.87170 * 179.82742 * 9 8 7 11 11 N 1.34973 * 107.85236 * 0.42509 * 10 9 8 12 12 C 1.46497 * 125.97190 * 179.71360 * 11 10 9 13 13 C 1.50701 * 109.47139 * 125.00033 * 12 11 10 14 14 H 1.07992 * 120.00008 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99985 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00427 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99953 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47035 * 90.00084 * 17 15 13 19 19 H 1.48507 * 109.47233 * 210.00176 * 17 15 13 20 20 H 1.48500 * 109.47059 * 330.00290 * 17 15 13 21 21 N 1.31210 * 125.97132 * 180.02562 * 8 7 5 22 22 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 23 23 H 1.09002 * 109.50626 * 174.99965 * 22 2 1 24 24 C 1.53096 * 109.50313 * 295.08466 * 22 2 1 25 25 N 1.47013 * 109.25957 * 176.78291 * 24 22 2 26 26 C 1.46894 * 111.00368 * 177.60572 * 25 24 22 27 27 C 1.47011 * 110.75140 * 301.38626 * 25 24 22 28 28 C 1.53104 * 109.25905 * 58.61497 * 27 25 24 29 29 O 1.43012 * 109.50622 * 54.90821 * 22 2 1 30 30 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 31 31 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 33 33 H 0.97000 * 119.99818 * 265.00273 * 4 2 1 34 34 H 0.96991 * 119.99893 * 359.97438 * 7 5 4 35 35 H 1.08004 * 126.06403 * 359.97438 * 9 8 7 36 36 H 1.07991 * 126.07466 * 180.13981 * 10 9 8 37 37 H 1.08998 * 109.46807 * 244.99813 * 12 11 10 38 38 H 1.08994 * 109.47625 * 4.99255 * 12 11 10 39 39 H 0.97004 * 120.00580 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.50775 * 296.71912 * 24 22 2 41 41 H 1.08998 * 109.50971 * 56.80746 * 24 22 2 42 42 H 1.09007 * 109.47070 * 60.00528 * 26 25 24 43 43 H 1.09005 * 109.47367 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47180 * 300.00117 * 26 25 24 45 45 H 1.09002 * 109.50616 * 178.54356 * 27 25 24 46 46 H 1.08996 * 109.51155 * 298.63372 * 27 25 24 47 47 H 1.08996 * 109.50724 * 63.08628 * 28 27 25 48 48 H 1.09000 * 109.50330 * 183.16904 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8576 1.1615 -2.4118 7 7 2.5969 -0.6535 -3.4575 8 6 2.7303 0.0458 -4.6652 9 6 2.4283 1.4013 -4.8710 10 6 2.6951 1.6943 -6.1642 11 7 3.1398 0.5680 -6.7603 12 6 3.5376 0.4369 -8.1642 13 6 4.9383 -0.1138 -8.2400 14 1 5.4783 -0.3428 -7.3333 15 6 5.5304 -0.3252 -9.4671 16 7 6.7529 -0.8053 -9.5334 17 14 4.5961 0.0703 -11.0356 18 1 4.8613 1.4777 -11.4282 19 1 5.0434 -0.8392 -12.1210 20 1 3.1407 -0.1132 -10.8044 21 7 3.1540 -0.4536 -5.8022 22 6 2.0400 -0.7213 1.2493 23 1 3.1263 -0.7999 1.2062 24 6 1.6335 0.0676 2.4967 25 7 2.0585 -0.6688 3.6960 26 6 1.7373 0.0826 4.9167 27 6 1.4528 -2.0080 3.7269 28 6 1.8611 -2.7761 2.4670 29 8 1.4685 -2.0309 1.3113 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.2490 -1.6318 -1.1526 34 1 2.8282 -1.5944 -3.4137 35 1 2.0522 2.0889 -4.1279 36 1 2.5697 2.6571 -6.6370 37 1 2.8527 -0.2405 -8.6741 38 1 3.5053 1.4151 -8.6439 39 1 7.1694 -0.9545 -10.3967 40 1 2.1138 1.0460 2.4812 41 1 0.5510 0.1937 2.5110 42 1 0.6609 0.2459 4.9701 43 1 2.0628 -0.4846 5.7888 44 1 2.2502 1.0442 4.8970 45 1 1.8012 -2.5448 4.6093 46 1 0.3673 -1.9158 3.7620 47 1 2.9422 -2.9151 2.4599 48 1 1.3691 -3.7487 2.4583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159898542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:08 Heat of formation + Delta-G solvation = 1.347710 kcal Electronic energy + Delta-G solvation = -28875.026033 eV Core-core repulsion = 24773.612012 eV Total energy + Delta-G solvation = -4101.414020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23795 -41.26541 -40.45656 -37.22735 -36.41624 -35.95942 -35.19568 -33.46276 -32.50782 -30.95327 -30.42597 -29.26474 -28.83091 -26.11810 -25.09557 -24.65845 -23.44957 -22.31287 -21.70333 -21.37945 -20.97789 -19.28965 -19.06313 -18.26330 -17.64346 -17.27540 -16.97578 -16.65008 -16.54032 -16.16346 -16.02409 -15.92045 -15.75903 -15.30629 -15.07786 -14.77161 -14.75255 -14.36089 -14.08872 -13.93118 -13.79556 -13.75171 -13.33964 -13.01598 -12.91724 -12.79107 -12.58192 -12.50245 -12.29112 -12.25738 -11.86844 -11.81851 -11.61859 -11.55564 -11.44431 -11.09896 -10.85508 -10.65290 -10.23235 -9.71677 -9.40024 -9.01566 -8.35976 -6.46072 1.05935 1.14054 1.37734 1.41109 1.50732 1.71657 2.09054 2.30369 2.41620 2.67589 2.82232 2.96485 3.15959 3.69758 3.82949 3.96061 3.99516 4.02679 4.16143 4.23224 4.28045 4.36625 4.42321 4.58871 4.62756 4.62852 4.65484 4.73681 4.78206 4.79899 4.86854 4.87571 4.96433 4.97544 5.00712 5.02468 5.16468 5.26332 5.36293 5.51256 5.82451 5.90213 5.94701 5.95636 6.04422 6.15621 6.44057 6.59345 6.74266 7.13949 7.17272 7.43431 8.81123 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029426 B = 0.001851 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.310213 B =15121.384610 C =15547.149738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 H 0.096 0.904 4 N -0.717 5.717 5 C 0.715 3.285 6 O -0.597 6.597 7 N -0.639 5.639 8 C 0.285 3.715 9 C -0.292 4.292 10 C 0.060 3.940 11 N -0.346 5.346 12 C 0.240 3.760 13 C -0.546 4.546 14 H 0.026 0.974 15 C 0.013 3.987 16 N -0.942 5.942 17 Si 0.956 3.044 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.239 1.239 21 N -0.351 5.351 22 C 0.095 3.905 23 H 0.071 0.929 24 C 0.027 3.973 25 N -0.555 5.555 26 C 0.024 3.976 27 C 0.017 3.983 28 C 0.060 3.940 29 O -0.388 6.388 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.419 0.581 35 H 0.169 0.831 36 H 0.211 0.789 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.272 0.728 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.030 0.970 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.041 0.959 47 H 0.059 0.941 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.966 0.293 28.288 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.069 3.931 3 H 0.114 0.886 4 N -0.373 5.373 5 C 0.414 3.586 6 O -0.475 6.475 7 N -0.291 5.291 8 C 0.029 3.971 9 C -0.323 4.323 10 C -0.088 4.088 11 N -0.128 5.128 12 C 0.120 3.880 13 C -0.584 4.584 14 H 0.044 0.956 15 C -0.185 4.185 16 N -0.581 5.581 17 Si 0.777 3.223 18 H -0.177 1.177 19 H -0.206 1.206 20 H -0.163 1.163 21 N -0.182 5.182 22 C 0.036 3.964 23 H 0.089 0.911 24 C -0.102 4.102 25 N -0.280 5.280 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.017 4.017 29 O -0.307 6.307 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.249 0.751 34 H 0.256 0.744 35 H 0.186 0.814 36 H 0.227 0.773 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.118 0.882 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.256 0.119 27.310 30.808 hybrid contribution -0.366 -0.230 -0.028 0.433 sum -14.622 -0.111 27.283 30.954 Atomic orbital electron populations 1.22082 0.94287 1.02689 1.02134 1.20876 0.95075 0.96206 0.80980 0.88601 1.44922 1.70586 1.14424 1.07371 1.15733 0.77956 0.84664 0.80215 1.90824 1.57200 1.15222 1.84268 1.41430 1.68308 1.13952 1.05369 1.19127 0.99370 0.92199 0.86395 1.21732 1.17783 0.95505 0.97328 1.23247 0.98216 0.93542 0.93764 1.48480 1.48877 1.05935 1.09471 1.19874 0.94841 0.99647 0.73656 1.21239 0.98745 1.44819 0.93639 0.95578 1.25931 0.95739 0.93740 1.03126 1.70050 1.15574 1.45539 1.26973 0.85606 0.80077 0.79430 0.77195 1.17725 1.20649 1.16266 1.77302 1.28864 1.14714 0.97317 1.22267 0.97619 0.83504 0.92972 0.91081 1.22759 0.99855 0.98084 0.89506 1.62189 1.59328 1.03562 1.02911 1.22424 0.99286 0.99087 0.91524 1.22853 0.97657 0.90350 1.00251 1.22825 1.00519 0.94977 0.83346 1.87982 1.71670 1.26558 1.44459 0.93749 0.91678 0.90189 0.75121 0.74439 0.81383 0.77264 0.93725 0.90032 0.91910 0.88731 0.92920 0.95180 0.90230 0.90716 0.88220 0.94050 0.92260 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.04 71.98 0.65 -2.01 16 2 C 0.17 3.08 2.45 44.99 0.11 3.19 16 3 H 0.10 1.90 7.58 -2.39 -0.02 1.88 16 4 N -0.72 -14.82 5.06 -457.78 -2.32 -17.14 16 5 C 0.71 21.01 8.50 179.05 1.52 22.53 16 6 O -0.60 -21.01 13.13 -4.03 -0.05 -21.06 16 7 N -0.64 -20.42 5.46 -321.22 -1.75 -22.17 16 8 C 0.28 11.68 8.11 133.31 1.08 12.76 16 9 C -0.29 -11.42 9.61 22.11 0.21 -11.20 16 10 C 0.06 2.27 11.44 83.52 0.96 3.22 16 11 N -0.35 -15.79 3.67 -351.85 -1.29 -17.08 16 12 C 0.24 11.25 5.33 85.63 0.46 11.70 16 13 C -0.55 -31.91 9.79 25.60 0.25 -31.66 16 14 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 15 C 0.01 0.76 5.47 84.65 0.46 1.22 16 16 N -0.94 -58.52 13.96 21.44 0.30 -58.22 16 17 Si 0.96 41.05 27.47 68.60 1.88 42.94 16 18 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 21 N -0.35 -16.69 12.42 -54.44 -0.68 -17.36 16 22 C 0.10 1.37 2.63 30.63 0.08 1.45 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 C 0.03 0.33 4.77 86.31 0.41 0.74 16 25 N -0.55 -6.53 4.98 -921.43 -4.59 -11.12 16 26 C 0.02 0.21 9.60 127.69 1.23 1.43 16 27 C 0.02 0.16 5.66 86.32 0.49 0.65 16 28 C 0.06 0.63 7.01 72.02 0.50 1.13 16 29 O -0.39 -5.67 9.33 -148.98 -1.39 -7.06 16 30 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 1.15 7.56 -2.39 -0.02 1.13 16 32 H 0.08 1.09 6.50 -2.39 -0.02 1.07 16 33 H 0.41 6.88 8.40 -92.71 -0.78 6.10 16 34 H 0.42 11.14 8.84 -92.71 -0.82 10.32 16 35 H 0.17 6.38 5.91 -2.91 -0.02 6.36 16 36 H 0.21 5.79 8.06 -2.92 -0.02 5.76 16 37 H 0.04 2.05 7.20 -2.39 -0.02 2.04 16 38 H 0.08 3.28 7.50 -2.39 -0.02 3.26 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 40 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.05 0.64 6.43 -2.39 -0.02 0.62 16 42 H 0.03 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -78.34 387.39 -2.14 -80.48 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.66 Total: 32.62 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 8.41 Total: 15.17 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -10.33 Total: -143.09 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.44 Total: -28.12 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.88 Total: 42.94 kcal Total: -78.34 -2.14 -80.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159898542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.829 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds