Wall clock time and date at job start Tue Mar 31 2020 19:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46743 * 2 1 4 4 N 1.46492 * 109.46996 * 120.00202 * 2 1 3 5 5 C 1.34784 * 120.00136 * 274.99958 * 4 2 1 6 6 O 1.21598 * 119.99519 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00128 * 180.02562 * 5 4 2 8 8 C 1.40194 * 119.99782 * 180.02562 * 7 5 4 9 9 C 1.40403 * 125.97562 * 359.97438 * 8 7 5 10 10 C 1.35244 * 107.86792 * 180.26373 * 9 8 7 11 11 N 1.34960 * 107.85895 * 359.63548 * 10 9 8 12 12 C 1.46502 * 125.97623 * 180.14015 * 11 10 9 13 13 C 1.50699 * 109.47164 * 125.24120 * 12 11 10 14 14 H 1.08004 * 120.00129 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00183 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00308 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99767 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46913 * 90.00405 * 17 15 13 19 19 H 1.48499 * 109.46950 * 210.00005 * 17 15 13 20 20 H 1.48498 * 109.47182 * 329.99848 * 17 15 13 21 21 N 1.31215 * 125.97176 * 180.02562 * 8 7 5 22 22 C 1.52996 * 109.47108 * 240.00281 * 2 1 3 23 23 H 1.09002 * 109.50944 * 65.08543 * 22 2 1 24 24 C 1.53099 * 109.50673 * 185.21688 * 22 2 1 25 25 N 1.47015 * 109.25806 * 176.78517 * 24 22 2 26 26 C 1.46903 * 110.99684 * 177.60736 * 25 24 22 27 27 C 1.47010 * 110.75220 * 301.37986 * 25 24 22 28 28 C 1.53095 * 109.25607 * 58.61828 * 27 25 24 29 29 O 1.43016 * 109.50666 * 304.99860 * 22 2 1 30 30 H 1.08992 * 109.47385 * 299.99747 * 1 2 3 31 31 H 1.08999 * 109.47160 * 60.00130 * 1 2 3 32 32 H 1.09003 * 109.46618 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00216 * 95.00561 * 4 2 1 34 34 H 0.97001 * 120.00224 * 0.02562 * 7 5 4 35 35 H 1.08002 * 126.06111 * 359.97438 * 9 8 7 36 36 H 1.07996 * 126.06943 * 179.77314 * 10 9 8 37 37 H 1.09003 * 109.47189 * 245.24031 * 12 11 10 38 38 H 1.08999 * 109.46905 * 5.24150 * 12 11 10 39 39 H 0.96999 * 120.00104 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.50592 * 296.71893 * 24 22 2 41 41 H 1.08998 * 109.50868 * 56.84467 * 24 22 2 42 42 H 1.09000 * 109.47077 * 187.58762 * 26 25 24 43 43 H 1.08995 * 109.47129 * 307.58550 * 26 25 24 44 44 H 1.08996 * 109.47098 * 67.58673 * 26 25 24 45 45 H 1.09006 * 109.50666 * 298.68501 * 27 25 24 46 46 H 1.09002 * 109.54474 * 178.57923 * 27 25 24 47 47 H 1.09004 * 109.50708 * 183.22000 * 28 27 25 48 48 H 1.09002 * 109.50578 * 63.09037 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8583 1.1616 2.4116 7 7 2.5967 -0.6535 3.4574 8 6 2.7301 0.0457 4.6652 9 6 2.4336 1.4028 4.8696 10 6 2.7002 1.6955 6.1628 11 7 3.1406 0.5683 6.7601 12 6 3.5396 0.4374 8.1636 13 6 2.7542 -0.6760 8.8074 14 1 2.0299 -1.2305 8.2290 15 6 2.9594 -0.9863 10.1350 16 7 2.2736 -1.9577 10.6970 17 14 4.2116 -0.0268 11.1356 18 1 3.5490 1.1419 11.7682 19 1 4.7797 -0.9044 12.1902 20 1 5.3014 0.4446 10.2438 21 7 3.1547 -0.4535 5.8020 22 6 2.0400 -0.7212 -1.2492 23 1 1.7533 -0.1579 -2.1373 24 6 3.5654 -0.8363 -1.1862 25 7 4.0427 -1.5971 -2.3501 26 6 5.5093 -1.6822 -2.3578 27 6 3.4371 -2.9363 -2.3810 28 6 1.9131 -2.8001 -2.4321 29 8 1.4702 -2.0315 -1.3103 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1525 34 1 2.8281 -1.5945 3.4137 35 1 2.0633 2.0918 4.1249 36 1 2.5796 2.6596 6.6344 37 1 4.6042 0.2102 8.2191 38 1 3.3399 1.3725 8.6868 39 1 2.4178 -2.1756 11.6312 40 1 4.0063 0.1605 -1.1971 41 1 3.8539 -1.3525 -0.2706 42 1 5.8423 -2.1306 -3.2938 43 1 5.9318 -0.6819 -2.2637 44 1 5.8419 -2.2973 -1.5217 45 1 3.7236 -3.4861 -1.4845 46 1 3.7844 -3.4732 -3.2638 47 1 1.4579 -3.7900 -2.3975 48 1 1.6233 -2.2976 -3.3549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159898679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:11 Heat of formation + Delta-G solvation = 28.528472 kcal Electronic energy + Delta-G solvation = -29239.275039 eV Core-core repulsion = 25139.039665 eV Total energy + Delta-G solvation = -4100.235374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87932 -40.34139 -39.37133 -36.46157 -35.63120 -34.60896 -33.30239 -31.96364 -30.99890 -29.95595 -29.30121 -29.04842 -27.04321 -25.04879 -24.46649 -23.12668 -22.10721 -21.34930 -20.66465 -20.25089 -19.80220 -18.15025 -17.23705 -16.93489 -16.76979 -16.43724 -15.83085 -15.54452 -15.32517 -15.30677 -15.19424 -14.68417 -14.39525 -14.27680 -14.12262 -13.70365 -13.37254 -13.03848 -12.98949 -12.74858 -12.52392 -12.40975 -12.28228 -12.26184 -12.10004 -11.90721 -11.76208 -11.23296 -11.12447 -10.95633 -10.76569 -10.61720 -10.09110 -10.06314 -9.97706 -9.72559 -9.49932 -9.24328 -8.87574 -8.75047 -8.13611 -7.44140 -6.21866 -4.23902 2.37705 2.62843 3.08545 3.16362 3.23273 3.23865 3.25168 3.33369 3.55596 3.83536 4.21542 4.24298 4.33983 4.42571 4.48420 4.65069 4.76523 4.84669 4.99928 5.03812 5.05986 5.12633 5.16603 5.22268 5.30978 5.37452 5.42550 5.44403 5.50411 5.59043 5.73152 5.80623 6.16105 6.20490 6.33635 6.37693 6.41698 6.42615 6.49982 6.60090 6.70993 6.77398 7.01102 7.30173 7.47586 7.85465 7.94125 8.36137 8.61437 8.62992 8.88487 9.33232 10.90885 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.002099 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.126980 B =13339.303438 C =13663.875245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 H 0.104 0.896 4 N -0.736 5.736 5 C 0.715 3.285 6 O -0.568 6.568 7 N -0.644 5.644 8 C 0.280 3.720 9 C -0.281 4.281 10 C 0.050 3.950 11 N -0.321 5.321 12 C 0.233 3.767 13 C -0.533 4.533 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.888 5.888 17 Si 0.873 3.127 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.264 1.264 21 N -0.301 5.301 22 C 0.087 3.913 23 H 0.083 0.917 24 C 0.022 3.978 25 N -0.542 5.542 26 C 0.024 3.976 27 C 0.014 3.986 28 C 0.065 3.935 29 O -0.375 6.375 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.407 0.593 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.268 0.732 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 1.257 -28.933 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.122 0.878 4 N -0.393 5.393 5 C 0.414 3.586 6 O -0.444 6.444 7 N -0.294 5.294 8 C 0.025 3.975 9 C -0.313 4.313 10 C -0.100 4.100 11 N -0.103 5.103 12 C 0.114 3.886 13 C -0.571 4.571 14 H 0.104 0.896 15 C -0.128 4.128 16 N -0.526 5.526 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.189 1.189 21 N -0.132 5.132 22 C 0.028 3.972 23 H 0.101 0.899 24 C -0.106 4.106 25 N -0.267 5.267 26 C -0.124 4.124 27 C -0.114 4.114 28 C -0.012 4.012 29 O -0.294 6.294 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.241 0.759 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.235 1.373 -28.281 28.403 hybrid contribution 1.057 -0.335 0.814 1.376 sum 3.293 1.039 -27.468 27.684 Atomic orbital electron populations 1.22107 0.94288 1.03016 1.02520 1.20852 0.95046 0.96279 0.80914 0.87844 1.45079 1.71862 1.13889 1.08445 1.15624 0.78286 0.84952 0.79747 1.90858 1.55883 1.13932 1.83741 1.41398 1.68344 1.13357 1.06275 1.18794 1.01568 0.91422 0.85713 1.21535 1.17202 0.95561 0.96990 1.22549 1.00683 0.93050 0.93679 1.48575 1.47841 1.04508 1.09365 1.20025 0.97014 0.99279 0.72327 1.21116 1.23379 1.16574 0.96059 0.89649 1.24839 0.95761 0.94966 0.97249 1.69876 1.40583 1.29110 1.12996 0.86905 0.82101 0.80397 0.80688 1.19708 1.20569 1.18873 1.77387 1.27360 1.12676 0.95755 1.22514 0.91382 0.85022 0.98248 0.89897 1.22820 0.95943 0.99820 0.92033 1.62224 1.07660 1.15607 1.41219 1.22390 0.86720 1.02165 1.01160 1.22842 0.96231 0.90337 1.01986 1.22658 0.92494 0.96489 0.89591 1.88020 1.68059 1.26064 1.47246 0.91570 0.91809 0.91494 0.76629 0.75865 0.81966 0.81469 0.94132 0.93361 0.92209 0.89337 0.93341 0.91103 0.91067 0.95270 0.93746 0.89614 0.88207 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.29 37.16 0.35 -1.15 16 2 C 0.17 1.59 2.49 -67.94 -0.17 1.42 16 3 H 0.10 1.01 7.58 -51.93 -0.39 0.62 16 4 N -0.74 -7.64 4.27 -58.68 -0.25 -7.89 16 5 C 0.71 10.40 8.50 -86.92 -0.74 9.66 16 6 O -0.57 -9.93 13.13 5.28 0.07 -9.86 16 7 N -0.64 -10.14 5.45 -15.50 -0.08 -10.22 16 8 C 0.28 5.65 8.11 -154.36 -1.25 4.40 16 9 C -0.28 -5.55 9.61 -39.83 -0.38 -5.94 16 10 C 0.05 0.97 11.44 -17.24 -0.20 0.77 16 11 N -0.32 -7.36 3.67 -62.56 -0.23 -7.59 16 12 C 0.23 5.56 5.33 -5.19 -0.03 5.54 16 13 C -0.53 -15.17 9.79 -34.44 -0.34 -15.51 16 14 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 17 Si 0.87 20.24 27.47 -169.99 -4.67 15.57 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 21 N -0.30 -6.98 12.42 31.44 0.39 -6.59 16 22 C 0.09 0.65 2.60 -26.68 -0.07 0.58 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 C 0.02 0.17 4.77 -3.71 -0.02 0.15 16 25 N -0.54 -3.85 4.99 -242.60 -1.21 -5.06 16 26 C 0.02 0.15 9.63 60.07 0.58 0.72 16 27 C 0.01 0.09 5.66 -3.71 -0.02 0.07 16 28 C 0.06 0.39 7.01 37.21 0.26 0.65 16 29 O -0.38 -2.99 9.32 -35.23 -0.33 -3.32 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16 33 H 0.40 3.54 7.87 -40.82 -0.32 3.22 16 34 H 0.41 5.35 8.84 -40.82 -0.36 4.98 16 35 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 36 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 37 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 38 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.09 0.67 8.11 -51.93 -0.42 0.24 16 41 H 0.05 0.41 7.03 -51.93 -0.36 0.04 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 44 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -34.44 388.47 -9.37 -43.81 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.56 Total: 7.91 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -2.13 Total: 3.39 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.61 Total: -63.37 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.26 Total: -13.17 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.44 -9.37 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159898679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.339 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds