Wall clock time and date at job start Tue Mar 31 2020 20:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47047 * 2 1 4 4 C 1.50702 * 109.47040 * 119.99865 * 2 1 3 5 5 O 1.21281 * 119.99798 * 33.84377 * 4 2 1 6 6 N 1.34774 * 119.99875 * 213.84901 * 4 2 1 7 7 C 1.46497 * 120.00308 * 4.77853 * 6 4 2 8 8 C 1.50700 * 109.46985 * 84.51391 * 7 6 4 9 9 H 1.07997 * 119.99933 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99764 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00254 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99751 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46903 * 90.00537 * 12 10 8 14 14 H 1.48495 * 109.46986 * 210.00049 * 12 10 8 15 15 H 1.48501 * 109.46985 * 330.00569 * 12 10 8 16 16 C 1.46503 * 119.99874 * 184.78333 * 6 4 2 17 17 C 1.53003 * 109.46873 * 89.99745 * 16 6 4 18 18 N 1.46904 * 109.46979 * 180.02562 * 17 16 6 19 19 C 1.47019 * 110.99770 * 293.63526 * 18 17 16 20 20 C 1.53099 * 109.25757 * 177.60669 * 19 18 17 21 21 O 1.43022 * 109.25674 * 56.84642 * 20 19 18 22 22 C 1.43012 * 113.73634 * 301.32940 * 21 20 19 23 23 C 1.47013 * 111.00388 * 169.99956 * 18 17 16 24 24 N 1.46495 * 109.47160 * 239.99889 * 2 1 3 25 25 C 1.34434 * 126.82482 * 324.71137 * 24 2 1 26 26 N 1.30828 * 108.07783 * 179.89311 * 25 24 2 27 27 C 1.33239 * 109.82775 * 0.38232 * 26 25 24 28 28 N 1.30713 * 108.95170 * 359.75888 * 27 26 25 29 29 H 1.09000 * 109.46659 * 55.37858 * 1 2 3 30 30 H 1.08996 * 109.46634 * 295.37567 * 1 2 3 31 31 H 1.09002 * 109.46860 * 175.37556 * 1 2 3 32 32 H 1.08998 * 109.47519 * 204.51712 * 7 6 4 33 33 H 1.08997 * 109.47118 * 324.51893 * 7 6 4 34 34 H 0.96998 * 119.99846 * 179.97438 * 11 10 8 35 35 H 1.08994 * 109.47069 * 209.99864 * 16 6 4 36 36 H 1.08997 * 109.46940 * 330.00135 * 16 6 4 37 37 H 1.09001 * 109.47165 * 299.99657 * 17 16 6 38 38 H 1.08993 * 109.47571 * 59.99980 * 17 16 6 39 39 H 1.08999 * 109.50622 * 297.53966 * 19 18 17 40 40 H 1.08999 * 109.50696 * 57.67155 * 19 18 17 41 41 H 1.09002 * 109.50531 * 296.91805 * 20 19 18 42 42 H 1.08997 * 109.54466 * 176.80091 * 20 19 18 43 43 H 1.09000 * 109.51089 * 298.72894 * 22 21 20 44 44 H 1.09002 * 109.53953 * 178.63077 * 22 21 20 45 45 H 1.09005 * 109.50070 * 302.32809 * 23 18 17 46 46 H 1.08995 * 109.50382 * 62.41152 * 23 18 17 47 47 H 1.08001 * 125.96016 * 0.03573 * 25 24 2 48 48 H 1.08005 * 125.52752 * 179.79929 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4120 -1.6482 1.6850 6 7 3.1709 -0.3034 1.8259 7 6 3.8643 0.8925 1.3410 8 6 3.2544 2.1174 1.9723 9 1 2.4328 2.0152 2.6657 10 6 3.7460 3.3684 1.6654 11 7 4.7468 3.4928 0.8213 12 14 2.9904 4.8868 2.4485 13 1 3.6977 5.1931 3.7178 14 1 3.1187 6.0385 1.5200 15 1 1.5541 4.6357 2.7303 16 6 3.7153 -1.0571 2.9582 17 6 4.6720 -2.1336 2.4415 18 7 5.2174 -2.8898 3.5768 19 6 6.0772 -2.0388 4.4122 20 6 6.5747 -2.8479 5.6129 21 8 7.2576 -4.0143 5.1453 22 6 6.4494 -4.8661 4.3289 23 6 5.9506 -4.0775 3.1153 24 7 2.0184 -0.6906 -1.1961 25 6 1.4589 -1.7552 -1.7967 26 7 2.1941 -2.0703 -2.8320 27 6 3.2314 -1.2386 -2.9195 28 7 3.1675 -0.3757 -1.9397 29 1 -0.3633 0.5839 -0.8457 30 1 -0.3632 0.4404 0.9285 31 1 -0.3633 -1.0243 -0.0829 32 1 4.9196 0.8337 1.6072 33 1 3.7659 0.9551 0.2572 34 1 5.0923 4.3730 0.6051 35 1 4.2542 -0.3795 3.6203 36 1 2.8998 -1.5287 3.5064 37 1 4.1330 -2.8113 1.7794 38 1 5.4875 -1.6621 1.8932 39 1 6.9297 -1.6958 3.8260 40 1 5.5069 -1.1790 4.7639 41 1 5.7257 -3.1455 6.2283 42 1 7.2579 -2.2391 6.2050 43 1 5.5968 -5.2224 4.9070 44 1 7.0415 -5.7169 3.9918 45 1 5.2879 -4.7058 2.5201 46 1 6.8006 -3.7671 2.5077 47 1 0.5581 -2.2607 -1.4812 48 1 4.0001 -1.2716 -3.6775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172167378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:47 Heat of formation + Delta-G solvation = 26.480195 kcal Electronic energy + Delta-G solvation = -30676.801288 eV Core-core repulsion = 26576.477094 eV Total energy + Delta-G solvation = -4100.324194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86861 -39.78405 -39.26925 -36.33749 -34.99184 -34.58736 -32.73849 -31.29435 -31.08394 -30.15794 -29.48201 -27.38664 -26.36715 -24.58548 -24.08392 -23.14989 -22.48591 -21.61349 -21.07220 -20.35327 -18.80911 -17.18520 -16.91602 -16.59413 -16.34819 -16.19917 -15.72880 -15.29098 -15.12364 -15.04895 -14.85560 -14.51406 -14.45313 -14.09974 -13.97393 -13.49774 -13.42565 -12.75863 -12.62652 -12.41491 -12.33013 -12.17051 -12.07457 -11.88787 -11.72361 -11.51572 -11.43184 -11.12005 -11.04107 -10.84139 -10.70982 -10.50193 -10.22897 -10.12987 -9.91531 -9.77162 -9.72821 -9.50937 -8.99975 -8.66099 -8.43033 -7.94311 -6.28266 -4.38717 1.86313 2.23020 3.15080 3.20681 3.22356 3.23836 3.31879 3.42849 3.76233 4.01557 4.22651 4.52816 4.72739 4.78649 4.88281 4.94698 4.98372 5.04918 5.07072 5.09893 5.19490 5.32349 5.36928 5.46871 5.48062 5.49504 5.55444 5.69080 5.71013 5.75006 5.85278 5.89192 5.91694 6.08422 6.11410 6.29380 6.48715 6.53181 6.68510 6.91724 6.95425 7.02132 7.04633 7.13997 7.31893 7.63968 7.91103 8.04105 8.32393 8.56131 8.73702 9.30156 10.77905 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.004541 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.402498 B = 6164.307060 C = 8558.060494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.131 3.869 3 H 0.147 0.853 4 C 0.512 3.488 5 O -0.558 6.558 6 N -0.580 5.580 7 C 0.229 3.771 8 C -0.550 4.550 9 H 0.062 0.938 10 C 0.069 3.931 11 N -0.882 5.882 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.123 3.877 17 C 0.047 3.953 18 N -0.532 5.532 19 C 0.012 3.988 20 C 0.065 3.935 21 O -0.388 6.388 22 C 0.066 3.934 23 C 0.018 3.982 24 N -0.358 5.358 25 C 0.256 3.744 26 N -0.552 5.552 27 C 0.184 3.816 28 N -0.296 5.296 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.214 0.786 48 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -10.586 1.748 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.026 3.974 3 H 0.164 0.836 4 C 0.296 3.704 5 O -0.437 6.437 6 N -0.310 5.310 7 C 0.110 3.890 8 C -0.589 4.589 9 H 0.080 0.920 10 C -0.135 4.135 11 N -0.519 5.519 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.001 4.001 17 C -0.082 4.082 18 N -0.258 5.258 19 C -0.117 4.117 20 C -0.012 4.012 21 O -0.307 6.307 22 C -0.011 4.011 23 C -0.110 4.110 24 N -0.150 5.150 25 C -0.041 4.041 26 N -0.280 5.280 27 C -0.119 4.119 28 N -0.123 5.123 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.230 0.770 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.171 -10.753 2.196 11.037 hybrid contribution 0.067 1.421 -0.110 1.427 sum -1.104 -9.331 2.087 9.625 Atomic orbital electron populations 1.21980 0.90739 1.03621 1.04205 1.21653 0.96147 1.00038 0.79600 0.83554 1.20312 0.81230 0.83714 0.85110 1.90632 1.57289 1.29796 1.66002 1.48232 1.23343 1.28030 1.31395 1.19656 0.92834 0.79904 0.96620 1.21463 1.18776 0.90675 1.27949 0.91969 1.24945 0.94737 0.99088 0.94750 1.69937 1.24595 1.24405 1.32955 0.86524 0.79760 0.82173 0.79224 1.20428 1.20955 1.19654 1.21247 0.97179 0.92887 0.88761 1.22454 0.97790 0.96021 0.91929 1.62145 1.35119 1.07641 1.20892 1.22890 0.96271 0.96827 0.95665 1.22679 0.97088 0.86456 0.94971 1.87962 1.39230 1.35056 1.68452 1.22636 0.95150 0.92453 0.90890 1.22763 0.97415 0.93278 0.97558 1.50429 1.18924 1.23814 1.21859 1.25938 0.99524 0.88512 0.90135 1.70543 1.07385 1.29486 1.20627 1.26003 0.97498 0.90691 0.97679 1.78312 1.02501 1.23907 1.07554 0.90961 0.89310 0.90960 0.94658 0.92916 0.92338 0.90237 0.89787 0.90929 0.94338 0.93709 0.88914 0.92230 0.88445 0.92262 0.88636 0.89746 0.94006 0.76964 0.76983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.53 37.16 0.32 -1.67 16 2 C 0.13 2.29 2.97 -69.08 -0.21 2.08 16 3 H 0.15 2.92 5.83 -51.93 -0.30 2.62 16 4 C 0.51 9.93 6.96 -10.99 -0.08 9.85 16 5 O -0.56 -11.37 15.90 5.56 0.09 -11.28 16 6 N -0.58 -11.65 2.47 -175.06 -0.43 -12.08 16 7 C 0.23 5.26 4.79 -5.20 -0.02 5.23 16 8 C -0.55 -13.57 8.73 -34.44 -0.30 -13.87 16 9 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.88 -23.70 13.29 55.43 0.74 -22.96 16 12 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.12 2.20 5.35 -4.04 -0.02 2.18 16 17 C 0.05 0.76 5.28 -3.82 -0.02 0.74 16 18 N -0.53 -7.55 4.73 -234.31 -1.11 -8.65 16 19 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 20 C 0.07 0.74 7.01 37.21 0.26 1.00 16 21 O -0.39 -4.96 10.83 -35.23 -0.38 -5.34 16 22 C 0.07 0.72 7.01 37.20 0.26 0.98 16 23 C 0.02 0.23 5.64 -3.72 -0.02 0.21 16 24 N -0.36 -6.16 3.53 -57.24 -0.20 -6.36 16 25 C 0.26 3.86 11.77 -90.65 -1.07 2.80 16 26 N -0.55 -8.83 11.19 -15.83 -0.18 -9.00 16 27 C 0.18 2.92 13.03 -91.81 -1.20 1.72 16 28 N -0.30 -5.50 12.22 29.29 0.36 -5.14 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.88 6.85 -51.93 -0.36 0.52 16 32 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 33 H 0.05 1.29 6.08 -51.93 -0.32 0.97 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.08 1.40 6.45 -51.93 -0.33 1.07 16 36 H 0.08 1.54 7.36 -51.93 -0.38 1.16 16 37 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 38 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.21 6.38 -51.93 -0.33 0.88 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.21 2.45 7.21 -52.49 -0.38 2.07 16 48 H 0.21 2.53 8.06 -52.48 -0.42 2.11 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -30.29 390.73 -9.89 -40.18 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.43 Total: 6.98 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -2.21 Total: 13.06 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.82 Total: -64.19 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.29 Total: -16.62 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.29 -9.89 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172167378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.661 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds