Wall clock time and date at job start Tue Mar 31 2020 20:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47047 * 2 1 4 4 C 1.50702 * 109.47040 * 119.99865 * 2 1 3 5 5 O 1.21281 * 119.99798 * 33.84377 * 4 2 1 6 6 N 1.34774 * 119.99875 * 213.84901 * 4 2 1 7 7 C 1.46497 * 120.00308 * 4.77853 * 6 4 2 8 8 C 1.50700 * 109.46985 * 84.51391 * 7 6 4 9 9 H 1.07997 * 119.99933 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99764 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00254 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99751 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46903 * 90.00537 * 12 10 8 14 14 H 1.48495 * 109.46986 * 210.00049 * 12 10 8 15 15 H 1.48501 * 109.46985 * 330.00569 * 12 10 8 16 16 C 1.46503 * 119.99874 * 184.78333 * 6 4 2 17 17 C 1.53003 * 109.46873 * 89.99745 * 16 6 4 18 18 N 1.46904 * 109.46979 * 180.02562 * 17 16 6 19 19 C 1.47019 * 110.99770 * 293.63526 * 18 17 16 20 20 C 1.53099 * 109.25757 * 177.60669 * 19 18 17 21 21 O 1.43022 * 109.25674 * 56.84642 * 20 19 18 22 22 C 1.43012 * 113.73634 * 301.32940 * 21 20 19 23 23 C 1.47013 * 111.00388 * 169.99956 * 18 17 16 24 24 N 1.46495 * 109.47160 * 239.99889 * 2 1 3 25 25 C 1.34434 * 126.82482 * 324.71137 * 24 2 1 26 26 N 1.30828 * 108.07783 * 179.89311 * 25 24 2 27 27 C 1.33239 * 109.82775 * 0.38232 * 26 25 24 28 28 N 1.30713 * 108.95170 * 359.75888 * 27 26 25 29 29 H 1.09000 * 109.46659 * 55.37858 * 1 2 3 30 30 H 1.08996 * 109.46634 * 295.37567 * 1 2 3 31 31 H 1.09002 * 109.46860 * 175.37556 * 1 2 3 32 32 H 1.08998 * 109.47519 * 204.51712 * 7 6 4 33 33 H 1.08997 * 109.47118 * 324.51893 * 7 6 4 34 34 H 0.96998 * 119.99846 * 179.97438 * 11 10 8 35 35 H 1.08994 * 109.47069 * 209.99864 * 16 6 4 36 36 H 1.08997 * 109.46940 * 330.00135 * 16 6 4 37 37 H 1.09001 * 109.47165 * 299.99657 * 17 16 6 38 38 H 1.08993 * 109.47571 * 59.99980 * 17 16 6 39 39 H 1.08999 * 109.50622 * 297.53966 * 19 18 17 40 40 H 1.08999 * 109.50696 * 57.67155 * 19 18 17 41 41 H 1.09002 * 109.50531 * 296.91805 * 20 19 18 42 42 H 1.08997 * 109.54466 * 176.80091 * 20 19 18 43 43 H 1.09000 * 109.51089 * 298.72894 * 22 21 20 44 44 H 1.09002 * 109.53953 * 178.63077 * 22 21 20 45 45 H 1.09005 * 109.50070 * 302.32809 * 23 18 17 46 46 H 1.08995 * 109.50382 * 62.41152 * 23 18 17 47 47 H 1.08001 * 125.96016 * 0.03573 * 25 24 2 48 48 H 1.08005 * 125.52752 * 179.79929 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4120 -1.6482 1.6850 6 7 3.1709 -0.3034 1.8259 7 6 3.8643 0.8925 1.3410 8 6 3.2544 2.1174 1.9723 9 1 2.4328 2.0152 2.6657 10 6 3.7460 3.3684 1.6654 11 7 4.7468 3.4928 0.8213 12 14 2.9904 4.8868 2.4485 13 1 3.6977 5.1931 3.7178 14 1 3.1187 6.0385 1.5200 15 1 1.5541 4.6357 2.7303 16 6 3.7153 -1.0571 2.9582 17 6 4.6720 -2.1336 2.4415 18 7 5.2174 -2.8898 3.5768 19 6 6.0772 -2.0388 4.4122 20 6 6.5747 -2.8479 5.6129 21 8 7.2576 -4.0143 5.1453 22 6 6.4494 -4.8661 4.3289 23 6 5.9506 -4.0775 3.1153 24 7 2.0184 -0.6906 -1.1961 25 6 1.4589 -1.7552 -1.7967 26 7 2.1941 -2.0703 -2.8320 27 6 3.2314 -1.2386 -2.9195 28 7 3.1675 -0.3757 -1.9397 29 1 -0.3633 0.5839 -0.8457 30 1 -0.3632 0.4404 0.9285 31 1 -0.3633 -1.0243 -0.0829 32 1 4.9196 0.8337 1.6072 33 1 3.7659 0.9551 0.2572 34 1 5.0923 4.3730 0.6051 35 1 4.2542 -0.3795 3.6203 36 1 2.8998 -1.5287 3.5064 37 1 4.1330 -2.8113 1.7794 38 1 5.4875 -1.6621 1.8932 39 1 6.9297 -1.6958 3.8260 40 1 5.5069 -1.1790 4.7639 41 1 5.7257 -3.1455 6.2283 42 1 7.2579 -2.2391 6.2050 43 1 5.5968 -5.2224 4.9070 44 1 7.0415 -5.7169 3.9918 45 1 5.2879 -4.7058 2.5201 46 1 6.8006 -3.7671 2.5077 47 1 0.5581 -2.2607 -1.4812 48 1 4.0001 -1.2716 -3.6775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172167378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:46 Heat of formation + Delta-G solvation = 7.907441 kcal Electronic energy + Delta-G solvation = -30677.606663 eV Core-core repulsion = 26576.477094 eV Total energy + Delta-G solvation = -4101.129569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.13889 -41.15897 -40.47083 -37.63641 -36.51307 -35.89189 -34.61338 -32.35469 -32.28109 -31.52123 -30.73297 -29.13589 -27.61591 -25.85110 -25.10693 -24.97354 -23.78041 -22.86829 -22.35744 -21.43055 -20.28416 -18.84116 -18.45187 -18.08926 -17.67091 -17.24321 -17.06957 -16.57216 -16.40826 -16.29567 -16.04912 -15.93438 -15.76459 -15.40907 -15.16006 -14.84406 -14.70050 -14.33063 -14.19018 -13.74921 -13.62363 -13.43271 -13.34306 -13.24121 -13.11268 -12.90968 -12.71410 -12.58496 -12.38849 -12.33966 -12.12357 -11.90184 -11.77309 -11.57915 -11.51456 -11.03776 -10.82048 -10.76916 -10.67475 -10.40060 -9.70926 -9.52808 -8.24121 -6.41424 0.59243 0.89004 1.40455 1.42668 1.51932 1.82858 1.96973 2.03782 2.38317 2.73056 2.91828 3.06587 3.38551 3.43608 3.48415 3.72148 3.82886 3.90339 3.93406 3.99470 4.08435 4.13214 4.24692 4.29322 4.30427 4.33920 4.50049 4.59613 4.62572 4.67915 4.71323 4.74564 4.75552 4.81860 4.87784 4.95470 5.02470 5.18642 5.24062 5.47094 5.54141 5.66980 5.76410 5.81840 5.82371 5.96975 6.11799 6.35578 6.71788 7.01742 7.09348 7.31972 8.81623 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007700 B = 0.004541 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.402498 B = 6164.307060 C = 8558.060494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.136 3.864 3 H 0.116 0.884 4 C 0.510 3.490 5 O -0.566 6.566 6 N -0.588 5.588 7 C 0.252 3.748 8 C -0.552 4.552 9 H 0.060 0.940 10 C 0.025 3.975 11 N -0.916 5.916 12 Si 0.957 3.043 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.126 3.874 17 C 0.065 3.935 18 N -0.534 5.534 19 C 0.011 3.989 20 C 0.069 3.931 21 O -0.402 6.402 22 C 0.068 3.932 23 C 0.016 3.984 24 N -0.369 5.369 25 C 0.264 3.736 26 N -0.563 5.563 27 C 0.191 3.809 28 N -0.346 5.346 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.010 0.990 33 H 0.038 0.962 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.031 0.969 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.116 0.884 43 H 0.067 0.933 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.032 0.968 47 H 0.249 0.751 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -11.499 2.342 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.134 0.866 4 C 0.296 3.704 5 O -0.446 6.446 6 N -0.317 5.317 7 C 0.131 3.869 8 C -0.590 4.590 9 H 0.078 0.922 10 C -0.177 4.177 11 N -0.554 5.554 12 Si 0.782 3.218 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.187 1.187 16 C 0.003 3.997 17 C -0.065 4.065 18 N -0.259 5.259 19 C -0.118 4.118 20 C -0.008 4.008 21 O -0.321 6.321 22 C -0.009 4.009 23 C -0.112 4.112 24 N -0.160 5.160 25 C -0.032 4.032 26 N -0.291 5.291 27 C -0.112 4.112 28 N -0.173 5.173 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.138 0.862 45 H 0.110 0.890 46 H 0.051 0.949 47 H 0.265 0.735 48 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -2.361 -11.690 2.800 12.251 hybrid contribution 0.449 1.615 -0.327 1.708 sum -1.912 -10.076 2.473 10.549 Atomic orbital electron populations 1.22027 0.87554 1.05203 1.05130 1.21562 0.98434 0.97987 0.78996 0.86572 1.20690 0.80665 0.83569 0.85501 1.90613 1.57356 1.30150 1.66440 1.48214 1.23756 1.27634 1.32110 1.19177 0.91455 0.80712 0.95564 1.21642 1.18463 0.91391 1.27540 0.92163 1.25685 0.95026 1.01848 0.95094 1.70049 1.25993 1.25019 1.34385 0.85560 0.79322 0.78642 0.78252 1.20082 1.20885 1.18717 1.21272 0.97260 0.92979 0.88200 1.22158 0.96689 0.95299 0.92314 1.62185 1.35918 1.07955 1.19873 1.22945 0.95539 0.97150 0.96121 1.22750 0.97810 0.86172 0.94068 1.87949 1.40083 1.35437 1.68658 1.22770 0.95728 0.92452 0.89937 1.22876 0.97062 0.92705 0.98564 1.50389 1.19062 1.24667 1.21927 1.26681 0.99885 0.87433 0.89213 1.70609 1.07711 1.29681 1.21132 1.26654 0.97725 0.89508 0.97286 1.78283 1.04018 1.25913 1.09085 0.89079 0.89186 0.89158 0.97206 0.94450 0.92335 0.90442 0.89938 0.92034 0.96269 0.95085 0.89125 0.91353 0.86598 0.91484 0.86234 0.88982 0.94919 0.73545 0.74008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.53 71.99 0.61 -2.95 16 2 C 0.14 4.74 2.97 44.25 0.13 4.87 16 3 H 0.12 4.78 5.83 -2.39 -0.01 4.76 16 4 C 0.51 19.84 6.96 87.66 0.61 20.45 16 5 O -0.57 -22.60 15.90 -3.03 -0.05 -22.65 16 6 N -0.59 -24.19 2.47 -826.17 -2.04 -26.23 16 7 C 0.25 12.01 4.79 85.63 0.41 12.42 16 8 C -0.55 -27.74 8.73 25.60 0.22 -27.51 16 9 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 10 C 0.02 1.27 5.46 84.65 0.46 1.73 16 11 N -0.92 -50.36 13.29 21.45 0.28 -50.07 16 12 Si 0.96 40.44 29.54 68.60 2.03 42.46 16 13 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 14 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 C 0.13 4.61 5.35 86.38 0.46 5.07 16 17 C 0.06 2.17 5.28 86.30 0.46 2.63 16 18 N -0.53 -15.09 4.73 -895.22 -4.23 -19.32 16 19 C 0.01 0.28 5.44 86.31 0.47 0.75 16 20 C 0.07 1.48 7.01 72.02 0.50 1.99 16 21 O -0.40 -9.62 10.83 -148.98 -1.61 -11.23 16 22 C 0.07 1.36 7.01 72.01 0.50 1.86 16 23 C 0.02 0.39 5.64 86.31 0.49 0.87 16 24 N -0.37 -12.54 3.53 -335.02 -1.18 -13.72 16 25 C 0.26 7.54 11.77 180.36 2.12 9.66 16 26 N -0.56 -17.18 11.19 -204.00 -2.28 -19.46 16 27 C 0.19 5.91 13.03 180.77 2.36 8.27 16 28 N -0.35 -13.01 12.22 -61.24 -0.75 -13.76 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 1.95 6.85 -2.39 -0.02 1.93 16 32 H 0.01 0.51 8.03 -2.39 -0.02 0.49 16 33 H 0.04 1.92 6.08 -2.39 -0.01 1.91 16 34 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.08 2.83 6.45 -2.39 -0.02 2.81 16 36 H 0.08 3.04 7.36 -2.39 -0.02 3.03 16 37 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 38 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 2.39 6.38 -2.39 -0.02 2.37 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 2.06 8.09 -2.38 -0.02 2.04 16 46 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.25 4.94 7.21 -2.91 -0.02 4.92 16 48 H 0.24 5.50 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -65.56 390.73 0.94 -64.63 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.96 Total: 29.25 kcal Atomic # 6 Polarization: 30.29 SS G_CDS: 9.81 Total: 40.11 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -10.20 Total: -142.56 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.66 Total: -33.88 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -65.56 0.94 -64.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172167378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.534 kcal (2) G-P(sol) polarization free energy of solvation -65.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds