Wall clock time and date at job start Tue Mar 31 2020 20:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47246 * 2 1 4 4 C 1.50697 * 109.46986 * 239.99503 * 2 1 3 5 5 O 1.21284 * 119.99747 * 245.44474 * 4 2 1 6 6 N 1.34777 * 120.00140 * 65.72458 * 4 2 1 7 7 C 1.46492 * 119.99841 * 4.65396 * 6 4 2 8 8 C 1.50705 * 109.47478 * 96.94755 * 7 6 4 9 9 H 1.08008 * 119.99497 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00254 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00173 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99804 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47299 * 89.99522 * 12 10 8 14 14 H 1.48500 * 109.47029 * 209.99672 * 12 10 8 15 15 H 1.48505 * 109.47075 * 329.99418 * 12 10 8 16 16 C 1.46501 * 120.00058 * 184.65178 * 6 4 2 17 17 C 1.53007 * 109.46549 * 90.00067 * 16 6 4 18 18 N 1.46902 * 109.46588 * 180.02562 * 17 16 6 19 19 C 1.47014 * 111.00030 * 293.63280 * 18 17 16 20 20 C 1.53095 * 109.26256 * 177.61129 * 19 18 17 21 21 O 1.43016 * 109.25805 * 56.84747 * 20 19 18 22 22 C 1.43019 * 113.73952 * 301.33180 * 21 20 19 23 23 C 1.47016 * 110.99971 * 170.00192 * 18 17 16 24 24 N 1.46497 * 109.46749 * 119.99527 * 2 1 3 25 25 C 1.34433 * 126.82416 * 35.00237 * 24 2 1 26 26 N 1.30831 * 108.07641 * 179.97438 * 25 24 2 27 27 C 1.33241 * 109.82899 * 0.02562 * 26 25 24 28 28 N 1.30709 * 108.94894 * 359.75395 * 27 26 25 29 29 H 1.09003 * 109.47144 * 189.64416 * 1 2 3 30 30 H 1.09004 * 109.47184 * 309.64575 * 1 2 3 31 31 H 1.09007 * 109.46801 * 69.64438 * 1 2 3 32 32 H 1.08997 * 109.47516 * 216.94495 * 7 6 4 33 33 H 1.08998 * 109.47491 * 336.94814 * 7 6 4 34 34 H 0.96993 * 119.99631 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.47153 * 210.00052 * 16 6 4 36 36 H 1.09003 * 109.47138 * 330.00310 * 16 6 4 37 37 H 1.09000 * 109.47224 * 299.99351 * 17 16 6 38 38 H 1.08993 * 109.47293 * 60.00322 * 17 16 6 39 39 H 1.08999 * 109.50954 * 297.54968 * 19 18 17 40 40 H 1.09005 * 109.50701 * 57.67365 * 19 18 17 41 41 H 1.09001 * 109.50137 * 296.91552 * 20 19 18 42 42 H 1.08996 * 109.54676 * 176.80364 * 20 19 18 43 43 H 1.08996 * 109.50639 * 298.73697 * 22 21 20 44 44 H 1.08997 * 109.54362 * 178.62561 * 22 21 20 45 45 H 1.09000 * 109.50159 * 302.32371 * 23 18 17 46 46 H 1.08999 * 109.50405 * 62.40889 * 23 18 17 47 47 H 1.07990 * 125.96121 * 359.92602 * 25 24 2 48 48 H 1.08008 * 125.52820 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6460 -1.7510 -1.1217 6 7 1.8045 -0.1868 -2.4512 7 6 1.1591 1.1221 -2.5779 8 6 2.2113 2.1856 -2.7597 9 1 3.2564 1.9136 -2.7785 10 6 1.8399 3.5059 -2.9009 11 7 0.5674 3.8372 -2.8775 12 14 3.1442 4.8240 -3.1269 13 1 3.4195 5.0049 -4.5749 14 1 2.6592 6.1041 -2.5515 15 1 4.3909 4.4107 -2.4339 16 6 2.2024 -0.9266 -3.6515 17 6 1.0486 -1.8245 -4.1028 18 7 1.4478 -2.5668 -5.3060 19 6 1.6416 -1.6583 -6.4455 20 6 2.1133 -2.4636 -7.6590 21 8 1.1603 -3.4917 -7.9423 22 6 0.9475 -4.3952 -6.8542 23 6 0.4639 -3.6093 -5.6326 24 7 2.0183 -0.6905 1.1962 25 6 1.4557 -1.7518 1.8000 26 7 2.1937 -2.0698 2.8325 27 6 3.2308 -1.2379 2.9202 28 7 3.1698 -0.3784 1.9373 29 1 -0.3633 -1.0132 0.1722 30 1 -0.3634 0.6557 0.7913 31 1 -0.3633 0.3575 -0.9636 32 1 0.4944 1.1175 -3.4416 33 1 0.5826 1.3318 -1.6769 34 1 0.3062 4.7660 -2.9772 35 1 2.4481 -0.2232 -4.4470 36 1 3.0746 -1.5408 -3.4273 37 1 0.8030 -2.5280 -3.3073 38 1 0.1765 -1.2104 -4.3270 39 1 0.6993 -1.1635 -6.6809 40 1 2.3924 -0.9102 -6.1909 41 1 3.0817 -2.9147 -7.4423 42 1 2.2040 -1.8037 -8.5218 43 1 1.8819 -4.9024 -6.6142 44 1 0.1948 -5.1322 -7.1342 45 1 0.3551 -4.2854 -4.7845 46 1 -0.4974 -3.1458 -5.8542 47 1 0.5519 -2.2536 1.4878 48 1 3.9998 -1.2713 3.6778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172167382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:49 Heat of formation + Delta-G solvation = 32.670676 kcal Electronic energy + Delta-G solvation = -30383.255956 eV Core-core repulsion = 26283.200202 eV Total energy + Delta-G solvation = -4100.055755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86228 -39.82891 -39.30998 -36.31561 -35.14136 -34.64114 -32.77257 -31.32428 -31.13041 -30.40420 -29.25146 -27.46123 -26.23988 -24.82274 -24.09920 -23.13223 -22.59370 -21.64786 -21.08995 -20.38175 -18.88125 -17.11077 -16.98843 -16.61075 -16.51820 -16.20782 -15.58790 -15.27927 -15.12223 -15.04715 -14.85904 -14.59708 -14.49546 -14.35192 -13.98123 -13.58255 -13.36524 -12.98751 -12.75747 -12.54875 -12.33972 -12.29913 -12.07121 -12.01157 -11.53029 -11.44550 -11.38012 -11.24076 -11.05242 -10.86416 -10.76553 -10.49425 -10.28060 -10.01012 -9.90852 -9.78520 -9.73459 -9.50195 -9.06226 -8.69700 -8.44632 -7.99413 -6.35426 -4.43289 1.87611 2.43345 2.95778 3.14113 3.21922 3.22444 3.26774 3.44238 3.75242 3.99282 4.21304 4.50038 4.64624 4.78062 4.86009 4.93090 4.95460 4.99173 5.04126 5.06089 5.13769 5.18509 5.34378 5.43809 5.45780 5.46840 5.54492 5.63610 5.68689 5.73213 5.79568 5.83574 5.87999 5.99527 6.12242 6.31444 6.45048 6.47308 6.68988 6.85088 6.90568 6.94314 7.02102 7.03646 7.25900 7.59009 7.83281 8.01914 8.31889 8.52737 8.70107 9.26101 10.71248 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007386 B = 0.004325 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3790.094359 B = 6472.548258 C = 9461.090401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.141 0.859 4 C 0.508 3.492 5 O -0.553 6.553 6 N -0.586 5.586 7 C 0.222 3.778 8 C -0.544 4.544 9 H 0.063 0.937 10 C 0.069 3.931 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.126 3.874 17 C 0.046 3.954 18 N -0.533 5.533 19 C 0.012 3.988 20 C 0.064 3.936 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.019 3.981 24 N -0.351 5.351 25 C 0.265 3.735 26 N -0.554 5.554 27 C 0.189 3.811 28 N -0.310 5.310 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.211 0.789 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -10.445 -1.970 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.159 0.841 4 C 0.293 3.707 5 O -0.432 6.432 6 N -0.317 5.317 7 C 0.103 3.897 8 C -0.583 4.583 9 H 0.081 0.919 10 C -0.135 4.135 11 N -0.527 5.527 12 Si 0.724 3.276 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.196 1.196 16 C 0.002 3.998 17 C -0.083 4.083 18 N -0.259 5.259 19 C -0.116 4.116 20 C -0.013 4.013 21 O -0.307 6.307 22 C -0.012 4.012 23 C -0.110 4.110 24 N -0.140 5.140 25 C -0.032 4.032 26 N -0.281 5.281 27 C -0.114 4.114 28 N -0.138 5.138 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.228 0.772 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.258 -10.701 -1.986 11.116 hybrid contribution -0.178 1.414 -0.244 1.446 sum -2.436 -9.287 -2.230 9.857 Atomic orbital electron populations 1.22369 0.90422 1.03263 1.06309 1.21278 0.96224 0.98811 0.80421 0.84139 1.20344 0.80204 0.85140 0.84969 1.90685 1.41420 1.24547 1.86521 1.48084 1.58935 1.20895 1.03778 1.19826 0.93599 0.77118 0.99183 1.21452 0.93590 0.91440 1.51788 0.91910 1.24913 0.95591 0.98572 0.94438 1.69892 1.15100 1.18837 1.48913 0.86499 0.81739 0.80799 0.78577 1.20397 1.20920 1.19616 1.21209 0.96689 0.94487 0.87419 1.22477 0.97674 0.96430 0.91737 1.62125 1.45947 1.13869 1.03960 1.22886 1.01834 0.95683 0.91203 1.22683 0.91926 0.89545 0.97101 1.87962 1.62621 1.42026 1.38112 1.22642 1.01032 0.91539 0.86003 1.22763 0.93971 0.95220 0.99010 1.50126 1.18269 1.24026 1.21610 1.25747 0.99237 0.88194 0.90052 1.70508 1.07445 1.29014 1.21182 1.25898 0.97482 0.90684 0.97377 1.78077 1.02799 1.25136 1.07749 0.91621 0.90279 0.87390 0.94479 0.93012 0.92315 0.89975 0.89992 0.90755 0.94204 0.93664 0.88847 0.92248 0.88445 0.92284 0.88657 0.89723 0.93991 0.77243 0.77015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 8.53 37.16 0.32 -1.85 16 2 C 0.14 2.36 2.93 -69.08 -0.20 2.16 16 3 H 0.14 2.64 7.71 -51.93 -0.40 2.24 16 4 C 0.51 9.71 7.05 -10.99 -0.08 9.63 16 5 O -0.55 -11.98 15.93 5.55 0.09 -11.89 16 6 N -0.59 -10.99 2.46 -175.06 -0.43 -11.42 16 7 C 0.22 4.61 4.45 -5.20 -0.02 4.59 16 8 C -0.54 -13.13 9.37 -34.44 -0.32 -13.45 16 9 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -22.72 13.29 55.43 0.74 -21.98 16 12 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C 0.13 2.15 5.39 -4.04 -0.02 2.13 16 17 C 0.05 0.67 5.28 -3.82 -0.02 0.65 16 18 N -0.53 -7.12 4.73 -234.30 -1.11 -8.22 16 19 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 20 C 0.06 0.72 7.01 37.21 0.26 0.98 16 21 O -0.39 -4.80 10.83 -35.23 -0.38 -5.18 16 22 C 0.06 0.67 7.01 37.21 0.26 0.93 16 23 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 24 N -0.35 -6.04 3.06 -57.25 -0.18 -6.21 16 25 C 0.26 4.03 11.67 -90.65 -1.06 2.97 16 26 N -0.55 -8.96 11.19 -15.83 -0.18 -9.13 16 27 C 0.19 2.97 13.03 -91.82 -1.20 1.77 16 28 N -0.31 -5.71 12.70 29.29 0.37 -5.33 16 29 H 0.06 0.71 6.74 -51.93 -0.35 0.36 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 1.51 5.43 -51.92 -0.28 1.23 16 32 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.05 1.05 4.11 -51.93 -0.21 0.84 16 34 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.08 1.42 6.45 -51.93 -0.33 1.09 16 36 H 0.08 1.52 7.36 -51.93 -0.38 1.14 16 37 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 38 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.19 6.38 -51.93 -0.33 0.86 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.21 2.35 7.09 -52.49 -0.37 1.97 16 48 H 0.21 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -30.92 388.12 -9.74 -40.67 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.27 Total: 5.70 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -2.22 Total: 12.44 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.78 Total: -62.31 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.29 Total: -17.07 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.92 -9.74 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172167382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.336 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds