Wall clock time and date at job start Tue Mar 31 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47246 * 2 1 4 4 C 1.50697 * 109.46986 * 239.99503 * 2 1 3 5 5 O 1.21284 * 119.99747 * 245.44474 * 4 2 1 6 6 N 1.34777 * 120.00140 * 65.72458 * 4 2 1 7 7 C 1.46492 * 119.99841 * 4.65396 * 6 4 2 8 8 C 1.50705 * 109.47478 * 96.94755 * 7 6 4 9 9 H 1.08008 * 119.99497 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00254 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00173 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99804 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47299 * 89.99522 * 12 10 8 14 14 H 1.48500 * 109.47029 * 209.99672 * 12 10 8 15 15 H 1.48505 * 109.47075 * 329.99418 * 12 10 8 16 16 C 1.46501 * 120.00058 * 184.65178 * 6 4 2 17 17 C 1.53007 * 109.46549 * 90.00067 * 16 6 4 18 18 N 1.46902 * 109.46588 * 180.02562 * 17 16 6 19 19 C 1.47014 * 111.00030 * 293.63280 * 18 17 16 20 20 C 1.53095 * 109.26256 * 177.61129 * 19 18 17 21 21 O 1.43016 * 109.25805 * 56.84747 * 20 19 18 22 22 C 1.43019 * 113.73952 * 301.33180 * 21 20 19 23 23 C 1.47016 * 110.99971 * 170.00192 * 18 17 16 24 24 N 1.46497 * 109.46749 * 119.99527 * 2 1 3 25 25 C 1.34433 * 126.82416 * 35.00237 * 24 2 1 26 26 N 1.30831 * 108.07641 * 179.97438 * 25 24 2 27 27 C 1.33241 * 109.82899 * 0.02562 * 26 25 24 28 28 N 1.30709 * 108.94894 * 359.75395 * 27 26 25 29 29 H 1.09003 * 109.47144 * 189.64416 * 1 2 3 30 30 H 1.09004 * 109.47184 * 309.64575 * 1 2 3 31 31 H 1.09007 * 109.46801 * 69.64438 * 1 2 3 32 32 H 1.08997 * 109.47516 * 216.94495 * 7 6 4 33 33 H 1.08998 * 109.47491 * 336.94814 * 7 6 4 34 34 H 0.96993 * 119.99631 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.47153 * 210.00052 * 16 6 4 36 36 H 1.09003 * 109.47138 * 330.00310 * 16 6 4 37 37 H 1.09000 * 109.47224 * 299.99351 * 17 16 6 38 38 H 1.08993 * 109.47293 * 60.00322 * 17 16 6 39 39 H 1.08999 * 109.50954 * 297.54968 * 19 18 17 40 40 H 1.09005 * 109.50701 * 57.67365 * 19 18 17 41 41 H 1.09001 * 109.50137 * 296.91552 * 20 19 18 42 42 H 1.08996 * 109.54676 * 176.80364 * 20 19 18 43 43 H 1.08996 * 109.50639 * 298.73697 * 22 21 20 44 44 H 1.08997 * 109.54362 * 178.62561 * 22 21 20 45 45 H 1.09000 * 109.50159 * 302.32371 * 23 18 17 46 46 H 1.08999 * 109.50405 * 62.40889 * 23 18 17 47 47 H 1.07990 * 125.96121 * 359.92602 * 25 24 2 48 48 H 1.08008 * 125.52820 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6460 -1.7510 -1.1217 6 7 1.8045 -0.1868 -2.4512 7 6 1.1591 1.1221 -2.5779 8 6 2.2113 2.1856 -2.7597 9 1 3.2564 1.9136 -2.7785 10 6 1.8399 3.5059 -2.9009 11 7 0.5674 3.8372 -2.8775 12 14 3.1442 4.8240 -3.1269 13 1 3.4195 5.0049 -4.5749 14 1 2.6592 6.1041 -2.5515 15 1 4.3909 4.4107 -2.4339 16 6 2.2024 -0.9266 -3.6515 17 6 1.0486 -1.8245 -4.1028 18 7 1.4478 -2.5668 -5.3060 19 6 1.6416 -1.6583 -6.4455 20 6 2.1133 -2.4636 -7.6590 21 8 1.1603 -3.4917 -7.9423 22 6 0.9475 -4.3952 -6.8542 23 6 0.4639 -3.6093 -5.6326 24 7 2.0183 -0.6905 1.1962 25 6 1.4557 -1.7518 1.8000 26 7 2.1937 -2.0698 2.8325 27 6 3.2308 -1.2379 2.9202 28 7 3.1698 -0.3784 1.9373 29 1 -0.3633 -1.0132 0.1722 30 1 -0.3634 0.6557 0.7913 31 1 -0.3633 0.3575 -0.9636 32 1 0.4944 1.1175 -3.4416 33 1 0.5826 1.3318 -1.6769 34 1 0.3062 4.7660 -2.9772 35 1 2.4481 -0.2232 -4.4470 36 1 3.0746 -1.5408 -3.4273 37 1 0.8030 -2.5280 -3.3073 38 1 0.1765 -1.2104 -4.3270 39 1 0.6993 -1.1635 -6.6809 40 1 2.3924 -0.9102 -6.1909 41 1 3.0817 -2.9147 -7.4423 42 1 2.2040 -1.8037 -8.5218 43 1 1.8819 -4.9024 -6.6142 44 1 0.1948 -5.1322 -7.1342 45 1 0.3551 -4.2854 -4.7845 46 1 -0.4974 -3.1458 -5.8542 47 1 0.5519 -2.2536 1.4878 48 1 3.9998 -1.2713 3.6778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172167382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:48 Heat of formation + Delta-G solvation = 13.577572 kcal Electronic energy + Delta-G solvation = -30384.083895 eV Core-core repulsion = 26283.200202 eV Total energy + Delta-G solvation = -4100.883694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.10791 -41.17710 -40.42849 -37.55318 -36.60925 -35.90845 -34.59888 -32.40590 -32.21980 -31.66014 -30.48636 -29.13896 -27.40243 -26.11466 -25.04756 -24.83350 -23.81409 -22.87348 -22.33661 -21.37525 -20.31126 -18.79683 -18.36127 -18.15847 -17.68111 -17.14780 -16.87344 -16.51949 -16.43400 -16.29675 -16.01986 -15.90205 -15.83682 -15.51780 -15.15300 -14.78827 -14.61955 -14.48866 -14.09231 -13.90289 -13.82773 -13.40696 -13.29659 -13.15602 -13.02186 -12.91461 -12.60858 -12.51111 -12.43401 -12.33640 -12.11122 -11.91015 -11.68916 -11.47783 -11.39055 -11.03915 -10.78604 -10.72665 -10.65246 -10.42083 -9.67972 -9.43835 -8.26043 -6.38434 0.64031 1.18638 1.37240 1.40881 1.44992 1.51054 2.00628 2.09719 2.38245 2.78952 2.96135 3.05933 3.33499 3.44768 3.53415 3.80771 3.84857 3.90745 3.97662 3.97779 4.07076 4.18279 4.29782 4.30422 4.36607 4.43686 4.52819 4.57202 4.62578 4.70180 4.71502 4.78111 4.81099 4.89091 4.94122 4.96147 5.01268 5.19669 5.23714 5.49913 5.55937 5.68992 5.82065 5.88291 5.90568 5.99925 6.15333 6.41197 6.70951 7.05623 7.10729 7.33716 8.79105 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007386 B = 0.004325 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3790.094359 B = 6472.548258 C = 9461.090401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.117 0.883 4 C 0.507 3.493 5 O -0.580 6.580 6 N -0.585 5.585 7 C 0.236 3.764 8 C -0.554 4.554 9 H 0.045 0.955 10 C 0.033 3.967 11 N -0.910 5.910 12 Si 0.945 3.055 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.128 3.872 17 C 0.062 3.938 18 N -0.542 5.542 19 C 0.012 3.988 20 C 0.067 3.933 21 O -0.403 6.403 22 C 0.064 3.936 23 C 0.018 3.982 24 N -0.363 5.363 25 C 0.270 3.730 26 N -0.568 5.568 27 C 0.194 3.806 28 N -0.358 5.358 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.269 0.731 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.114 0.886 43 H 0.061 0.939 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.040 0.960 47 H 0.248 0.752 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 -11.387 -1.876 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.134 0.866 4 C 0.294 3.706 5 O -0.461 6.461 6 N -0.315 5.315 7 C 0.116 3.884 8 C -0.592 4.592 9 H 0.063 0.937 10 C -0.169 4.169 11 N -0.548 5.548 12 Si 0.771 3.229 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.204 1.204 16 C 0.005 3.995 17 C -0.067 4.067 18 N -0.268 5.268 19 C -0.116 4.116 20 C -0.010 4.010 21 O -0.321 6.321 22 C -0.012 4.012 23 C -0.110 4.110 24 N -0.153 5.153 25 C -0.026 4.026 26 N -0.296 5.296 27 C -0.108 4.108 28 N -0.185 5.185 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.079 0.921 44 H 0.138 0.862 45 H 0.114 0.886 46 H 0.058 0.942 47 H 0.264 0.736 48 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.073 -11.646 -1.905 12.195 hybrid contribution 0.120 1.645 -0.254 1.669 sum -2.953 -10.001 -2.159 10.649 Atomic orbital electron populations 1.22355 0.87354 1.05497 1.06316 1.21207 0.98443 0.96984 0.79571 0.86566 1.20737 0.79541 0.84830 0.85501 1.90662 1.42619 1.25868 1.86916 1.48052 1.58626 1.20357 1.04464 1.19568 0.92617 0.77130 0.99070 1.21628 0.93450 0.92587 1.51544 0.93681 1.25442 0.96973 1.00026 0.94428 1.69941 1.16016 1.19234 1.49650 0.85752 0.79583 0.79038 0.78518 1.19900 1.20418 1.20411 1.21206 0.97234 0.94348 0.86708 1.22210 0.96141 0.95877 0.92455 1.62134 1.46786 1.14134 1.03699 1.22898 1.01259 0.95784 0.91648 1.22731 0.91749 0.89522 0.96953 1.87947 1.62846 1.42382 1.38975 1.22796 1.01929 0.91409 0.85085 1.22855 0.93317 0.94769 1.00033 1.50139 1.18483 1.24911 1.21757 1.26553 0.99755 0.87176 0.89153 1.70572 1.07916 1.29363 1.21784 1.26626 0.97705 0.89436 0.97068 1.78030 1.04241 1.27061 1.09215 0.88710 0.88785 0.88271 0.95456 0.92039 0.92146 0.90608 0.91575 0.90873 0.94560 0.94459 0.89559 0.91940 0.86794 0.92050 0.86204 0.88646 0.94205 0.73585 0.73702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 8.53 71.98 0.61 -3.24 16 2 C 0.14 4.86 2.93 44.25 0.13 4.99 16 3 H 0.12 4.47 7.71 -2.39 -0.02 4.46 16 4 C 0.51 19.46 7.05 87.66 0.62 20.07 16 5 O -0.58 -25.18 15.93 -3.04 -0.05 -25.23 16 6 N -0.58 -22.24 2.46 -826.16 -2.03 -24.27 16 7 C 0.24 9.92 4.45 85.64 0.38 10.30 16 8 C -0.55 -27.10 9.37 25.60 0.24 -26.86 16 9 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 10 C 0.03 1.63 5.46 84.65 0.46 2.10 16 11 N -0.91 -46.30 13.29 21.45 0.28 -46.02 16 12 Si 0.94 40.53 29.54 68.60 2.03 42.55 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 C 0.13 4.49 5.39 86.38 0.47 4.96 16 17 C 0.06 1.82 5.28 86.31 0.46 2.28 16 18 N -0.54 -14.16 4.73 -895.20 -4.23 -18.39 16 19 C 0.01 0.30 5.44 86.31 0.47 0.77 16 20 C 0.07 1.43 7.01 72.01 0.50 1.93 16 21 O -0.40 -9.30 10.83 -148.98 -1.61 -10.91 16 22 C 0.06 1.22 7.01 72.02 0.50 1.72 16 23 C 0.02 0.39 5.64 86.31 0.49 0.87 16 24 N -0.36 -12.23 3.06 -335.03 -1.03 -13.25 16 25 C 0.27 7.68 11.67 180.36 2.10 9.78 16 26 N -0.57 -17.38 11.19 -204.00 -2.28 -19.66 16 27 C 0.19 5.87 13.03 180.77 2.36 8.23 16 28 N -0.36 -13.06 12.70 -61.24 -0.78 -13.84 16 29 H 0.09 1.75 6.74 -2.39 -0.02 1.74 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.10 2.65 5.43 -2.38 -0.01 2.63 16 32 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.06 2.50 4.11 -2.39 -0.01 2.49 16 34 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 35 H 0.08 2.72 6.45 -2.39 -0.02 2.70 16 36 H 0.07 2.52 7.36 -2.39 -0.02 2.51 16 37 H 0.07 2.16 8.04 -2.39 -0.02 2.14 16 38 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 2.23 6.38 -2.38 -0.02 2.22 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.10 1.82 8.09 -2.39 -0.02 1.80 16 46 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.25 4.70 7.09 -2.92 -0.02 4.68 16 48 H 0.25 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -66.18 388.12 1.06 -65.12 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.96 Total: 26.00 kcal Atomic # 6 Polarization: 28.11 SS G_CDS: 9.79 Total: 37.90 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -10.07 Total: -135.44 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.66 Total: -36.15 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -66.18 1.06 -65.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172167382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.699 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds