Wall clock time and date at job start Tue Mar 31 2020 20:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21590 * 120.00179 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99632 * 179.97438 * 5 4 2 8 8 C 1.40193 * 119.99843 * 179.97438 * 7 5 4 9 9 C 1.40400 * 125.97089 * 359.71431 * 8 7 5 10 10 C 1.35251 * 107.86473 * 179.82691 * 9 8 7 11 11 N 1.34963 * 107.85589 * 0.43381 * 10 9 8 12 12 C 1.46509 * 125.97167 * 179.70432 * 11 10 9 13 13 C 1.50701 * 109.46813 * 124.99930 * 12 11 10 14 14 H 1.08001 * 120.00315 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99948 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99736 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00000 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47146 * 90.00159 * 17 15 13 19 19 H 1.48500 * 109.47197 * 210.00009 * 17 15 13 20 20 H 1.48507 * 109.47248 * 330.00288 * 17 15 13 21 21 N 1.31209 * 125.97246 * 180.02562 * 8 7 5 22 22 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 23 23 O 1.21275 * 119.99870 * 239.99982 * 22 2 1 24 24 N 1.34777 * 119.99487 * 60.00428 * 22 2 1 25 25 C 1.46500 * 119.99750 * 180.02562 * 24 22 2 26 26 C 1.53008 * 109.46913 * 59.99645 * 25 24 22 27 27 C 1.52996 * 109.47364 * 179.97438 * 25 24 22 28 28 C 1.53005 * 109.47137 * 300.00095 * 25 24 22 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 0.96995 * 119.99663 * 359.97438 * 7 5 4 34 34 H 1.08000 * 126.07144 * 0.02562 * 9 8 7 35 35 H 1.07995 * 126.06877 * 180.13947 * 10 9 8 36 36 H 1.08994 * 109.47057 * 244.99432 * 12 11 10 37 37 H 1.08995 * 109.47077 * 5.00380 * 12 11 10 38 38 H 0.97004 * 119.99625 * 179.97438 * 16 15 13 39 39 H 0.96996 * 120.00263 * 359.97438 * 24 22 2 40 40 H 1.09000 * 109.47188 * 60.00022 * 26 25 24 41 41 H 1.09001 * 109.46630 * 180.02562 * 26 25 24 42 42 H 1.09002 * 109.47288 * 299.99937 * 26 25 24 43 43 H 1.09004 * 109.46785 * 60.00155 * 27 25 24 44 44 H 1.09001 * 109.47364 * 179.97438 * 27 25 24 45 45 H 1.08992 * 109.47346 * 300.00533 * 27 25 24 46 46 H 1.09002 * 109.47193 * 59.99341 * 28 25 24 47 47 H 1.09001 * 109.46962 * 179.97438 * 28 25 24 48 48 H 1.08996 * 109.46524 * 299.99735 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1616 2.4116 7 7 2.5959 -0.6537 3.4578 8 6 2.7302 0.0458 4.6652 9 6 2.4406 1.4046 4.8678 10 6 2.6965 1.6947 6.1638 11 7 3.1408 0.5683 6.7600 12 6 3.5398 0.4376 8.1637 13 6 2.7539 -0.6753 8.8077 14 1 2.0293 -1.2295 8.2295 15 6 2.9598 -0.9861 10.1351 16 7 3.8417 -0.3109 10.8393 17 14 1.9851 -2.3651 10.9336 18 1 2.7200 -3.6459 10.7769 19 1 1.8045 -2.0716 12.3781 20 1 0.6557 -2.4741 10.2806 21 7 3.1541 -0.4535 5.8022 22 6 2.0323 -0.7105 -1.2305 23 8 2.7296 -1.6965 -1.1191 24 7 1.7068 -0.2500 -2.4546 25 6 2.1946 -0.9409 -3.6507 26 6 1.6839 -2.3833 -3.6504 27 6 1.6843 -0.2200 -4.9000 28 6 3.7246 -0.9417 -3.6509 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 2.8259 -1.5950 3.4143 34 1 2.0749 2.0948 4.1220 35 1 2.5724 2.6578 6.6363 36 1 4.6043 0.2098 8.2190 37 1 3.3406 1.3729 8.6866 38 1 3.9863 -0.5293 11.7733 39 1 1.1488 0.5385 -2.5436 40 1 0.5939 -2.3828 -3.6502 41 1 2.0473 -2.8975 -4.5402 42 1 2.0472 -2.8972 -2.7604 43 1 2.0478 0.8077 -4.9004 44 1 2.0476 -0.7338 -5.7900 45 1 0.5944 -0.2198 -4.8996 46 1 4.0879 -1.4555 -2.7609 47 1 4.0876 -1.4562 -4.5407 48 1 4.0884 0.0858 -3.6511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173350038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:54 Heat of formation + Delta-G solvation = 14.660063 kcal Electronic energy + Delta-G solvation = -28683.316690 eV Core-core repulsion = 24582.479937 eV Total energy + Delta-G solvation = -4100.836753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02068 -40.49855 -39.43780 -37.12378 -35.35597 -34.54899 -33.37312 -32.74073 -31.08825 -29.97265 -29.21754 -27.86811 -27.64919 -26.60590 -25.05974 -23.16691 -22.08350 -20.95965 -20.34901 -20.03900 -19.83212 -18.49130 -17.25949 -16.60793 -16.52440 -16.37186 -15.90919 -15.50813 -15.27639 -14.81854 -14.73105 -14.50279 -14.19549 -13.98703 -13.90549 -13.79044 -13.13046 -12.95364 -12.79922 -12.66458 -12.52485 -12.49005 -12.30932 -12.18319 -12.09201 -11.92780 -11.73423 -11.57880 -11.43488 -11.02083 -10.87311 -10.40121 -10.23315 -10.07876 -9.98422 -9.67562 -9.54579 -9.46582 -9.30750 -8.60669 -8.06784 -7.38317 -6.21655 -4.26475 2.17423 2.20619 2.68245 2.79526 3.13537 3.25806 3.31466 3.36576 3.63782 3.86512 4.09497 4.28687 4.37678 4.42861 4.44525 4.59409 4.72887 4.83354 5.05070 5.13454 5.16377 5.20201 5.27532 5.33623 5.39389 5.43444 5.53167 5.55006 5.57569 5.84076 5.84258 5.88171 5.96073 6.13435 6.16893 6.29488 6.56602 6.60363 6.89401 7.03734 7.06775 7.14426 7.52474 7.72430 7.76621 7.85586 8.00382 8.10166 8.58574 8.69920 8.83981 9.38985 10.86996 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.001842 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.402174 B =15198.059948 C =15547.898200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.117 0.883 4 N -0.729 5.729 5 C 0.719 3.281 6 O -0.569 6.569 7 N -0.641 5.641 8 C 0.276 3.724 9 C -0.286 4.286 10 C 0.051 3.949 11 N -0.320 5.320 12 C 0.258 3.742 13 C -0.527 4.527 14 H 0.069 0.931 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.307 5.307 22 C 0.516 3.484 23 O -0.528 6.528 24 N -0.720 5.720 25 C 0.168 3.832 26 C -0.164 4.164 27 C -0.156 4.156 28 C -0.165 4.165 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.406 0.594 33 H 0.408 0.592 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.402 0.598 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 1.476 -31.344 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.134 0.866 4 N -0.387 5.387 5 C 0.418 3.582 6 O -0.445 6.445 7 N -0.291 5.291 8 C 0.022 3.978 9 C -0.318 4.318 10 C -0.099 4.099 11 N -0.102 5.102 12 C 0.141 3.859 13 C -0.566 4.566 14 H 0.087 0.913 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 N -0.138 5.138 22 C 0.301 3.699 23 O -0.404 6.404 24 N -0.373 5.373 25 C 0.083 3.917 26 C -0.222 4.222 27 C -0.213 4.213 28 C -0.223 4.223 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.243 0.757 33 H 0.243 0.757 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.237 0.763 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.030 0.804 -30.316 30.741 hybrid contribution -0.770 -0.538 0.055 0.941 sum -5.801 0.266 -30.260 30.812 Atomic orbital electron populations 1.22182 0.92904 1.03150 1.03746 1.20553 0.95405 0.97884 0.82425 0.86579 1.44687 1.72050 1.14429 1.07527 1.15488 0.78296 0.84780 0.79651 1.90858 1.55997 1.13802 1.83823 1.41321 1.68099 1.13421 1.06229 1.18769 1.01985 0.91410 0.85635 1.21502 1.17903 0.95437 0.96918 1.22552 1.00553 0.93258 0.93582 1.49055 1.46819 1.04328 1.10020 1.19734 0.97128 0.99412 0.69637 1.21267 1.22721 1.17143 0.95459 0.91301 1.24946 0.95417 0.96914 0.96842 1.69922 1.33772 1.40543 1.09148 0.86327 0.80273 0.81724 0.78155 1.20360 1.21012 1.19741 1.77334 1.27292 1.13251 0.95932 1.20629 0.79885 0.84595 0.84747 1.90655 1.37275 1.26027 1.86470 1.46098 1.53909 1.32145 1.05111 1.20379 0.94580 0.92736 0.84010 1.22231 1.00937 0.95367 1.03675 1.22094 1.01650 1.00873 0.96709 1.22238 0.94031 1.02362 1.03687 0.91236 0.90184 0.91811 0.75716 0.75699 0.82168 0.81551 0.93750 0.92532 0.92366 0.76347 0.92657 0.91846 0.90251 0.91812 0.90747 0.91834 0.90221 0.91830 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.38 37.16 0.35 -0.81 16 2 C 0.15 1.29 2.98 -69.08 -0.21 1.08 16 3 H 0.12 1.06 7.58 -51.93 -0.39 0.67 16 4 N -0.73 -8.05 4.96 -59.81 -0.30 -8.35 16 5 C 0.72 10.70 8.50 -86.91 -0.74 9.96 16 6 O -0.57 -9.88 13.13 5.29 0.07 -9.81 16 7 N -0.64 -10.35 5.46 -15.51 -0.08 -10.43 16 8 C 0.28 5.66 8.11 -154.37 -1.25 4.41 16 9 C -0.29 -5.75 9.61 -39.83 -0.38 -6.14 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 11 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 12 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 13 C -0.53 -14.82 9.24 -34.44 -0.32 -15.14 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.51 13.29 55.43 0.74 -24.78 16 17 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 N -0.31 -7.20 12.42 31.44 0.39 -6.81 16 22 C 0.52 4.38 6.64 -10.98 -0.07 4.31 16 23 O -0.53 -5.98 12.05 5.56 0.07 -5.91 16 24 N -0.72 -4.12 5.00 -47.60 -0.24 -4.35 16 25 C 0.17 0.96 1.06 -131.81 -0.14 0.83 16 26 C -0.16 -1.06 8.40 37.16 0.31 -0.75 16 27 C -0.16 -0.53 8.59 37.16 0.32 -0.21 16 28 C -0.17 -1.15 8.40 37.16 0.31 -0.83 16 29 H 0.07 0.30 7.56 -51.93 -0.39 -0.09 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.41 4.10 7.80 -40.82 -0.32 3.78 16 33 H 0.41 5.54 8.84 -40.82 -0.36 5.18 16 34 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 35 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 36 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.40 1.32 7.89 -40.82 -0.32 1.00 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.72 6.17 -51.93 -0.32 0.40 16 43 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.08 0.77 6.17 -51.93 -0.32 0.45 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -34.10 396.47 -8.13 -42.23 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.35 Total: 7.72 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.14 Total: 5.76 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.28 Total: -62.51 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.14 Total: -15.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.10 -8.13 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173350038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.892 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds