Wall clock time and date at job start Tue Mar 31 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21590 * 120.00179 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99632 * 179.97438 * 5 4 2 8 8 C 1.40193 * 119.99843 * 179.97438 * 7 5 4 9 9 C 1.40400 * 125.97089 * 359.71431 * 8 7 5 10 10 C 1.35251 * 107.86473 * 179.82691 * 9 8 7 11 11 N 1.34963 * 107.85589 * 0.43381 * 10 9 8 12 12 C 1.46509 * 125.97167 * 179.70432 * 11 10 9 13 13 C 1.50701 * 109.46813 * 124.99930 * 12 11 10 14 14 H 1.08001 * 120.00315 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99948 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99736 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00000 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47146 * 90.00159 * 17 15 13 19 19 H 1.48500 * 109.47197 * 210.00009 * 17 15 13 20 20 H 1.48507 * 109.47248 * 330.00288 * 17 15 13 21 21 N 1.31209 * 125.97246 * 180.02562 * 8 7 5 22 22 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 23 23 O 1.21275 * 119.99870 * 239.99982 * 22 2 1 24 24 N 1.34777 * 119.99487 * 60.00428 * 22 2 1 25 25 C 1.46500 * 119.99750 * 180.02562 * 24 22 2 26 26 C 1.53008 * 109.46913 * 59.99645 * 25 24 22 27 27 C 1.52996 * 109.47364 * 179.97438 * 25 24 22 28 28 C 1.53005 * 109.47137 * 300.00095 * 25 24 22 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 0.96995 * 119.99663 * 359.97438 * 7 5 4 34 34 H 1.08000 * 126.07144 * 0.02562 * 9 8 7 35 35 H 1.07995 * 126.06877 * 180.13947 * 10 9 8 36 36 H 1.08994 * 109.47057 * 244.99432 * 12 11 10 37 37 H 1.08995 * 109.47077 * 5.00380 * 12 11 10 38 38 H 0.97004 * 119.99625 * 179.97438 * 16 15 13 39 39 H 0.96996 * 120.00263 * 359.97438 * 24 22 2 40 40 H 1.09000 * 109.47188 * 60.00022 * 26 25 24 41 41 H 1.09001 * 109.46630 * 180.02562 * 26 25 24 42 42 H 1.09002 * 109.47288 * 299.99937 * 26 25 24 43 43 H 1.09004 * 109.46785 * 60.00155 * 27 25 24 44 44 H 1.09001 * 109.47364 * 179.97438 * 27 25 24 45 45 H 1.08992 * 109.47346 * 300.00533 * 27 25 24 46 46 H 1.09002 * 109.47193 * 59.99341 * 28 25 24 47 47 H 1.09001 * 109.46962 * 179.97438 * 28 25 24 48 48 H 1.08996 * 109.46524 * 299.99735 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1616 2.4116 7 7 2.5959 -0.6537 3.4578 8 6 2.7302 0.0458 4.6652 9 6 2.4406 1.4046 4.8678 10 6 2.6965 1.6947 6.1638 11 7 3.1408 0.5683 6.7600 12 6 3.5398 0.4376 8.1637 13 6 2.7539 -0.6753 8.8077 14 1 2.0293 -1.2295 8.2295 15 6 2.9598 -0.9861 10.1351 16 7 3.8417 -0.3109 10.8393 17 14 1.9851 -2.3651 10.9336 18 1 2.7200 -3.6459 10.7769 19 1 1.8045 -2.0716 12.3781 20 1 0.6557 -2.4741 10.2806 21 7 3.1541 -0.4535 5.8022 22 6 2.0323 -0.7105 -1.2305 23 8 2.7296 -1.6965 -1.1191 24 7 1.7068 -0.2500 -2.4546 25 6 2.1946 -0.9409 -3.6507 26 6 1.6839 -2.3833 -3.6504 27 6 1.6843 -0.2200 -4.9000 28 6 3.7246 -0.9417 -3.6509 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 2.8259 -1.5950 3.4143 34 1 2.0749 2.0948 4.1220 35 1 2.5724 2.6578 6.6363 36 1 4.6043 0.2098 8.2190 37 1 3.3406 1.3729 8.6866 38 1 3.9863 -0.5293 11.7733 39 1 1.1488 0.5385 -2.5436 40 1 0.5939 -2.3828 -3.6502 41 1 2.0473 -2.8975 -4.5402 42 1 2.0472 -2.8972 -2.7604 43 1 2.0478 0.8077 -4.9004 44 1 2.0476 -0.7338 -5.7900 45 1 0.5944 -0.2198 -4.8996 46 1 4.0879 -1.4555 -2.7609 47 1 4.0876 -1.4562 -4.5407 48 1 4.0884 0.0858 -3.6511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173350038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:53 Heat of formation + Delta-G solvation = -9.471626 kcal Electronic energy + Delta-G solvation = -28684.363119 eV Core-core repulsion = 24582.479937 eV Total energy + Delta-G solvation = -4101.883182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26275 -41.57332 -40.62360 -37.76820 -36.45591 -35.85499 -35.27672 -33.55524 -32.67221 -31.06326 -30.73061 -28.49033 -28.22298 -28.17805 -25.88504 -24.92714 -23.31051 -22.13057 -21.51285 -21.34457 -20.55667 -19.62037 -18.68979 -18.38564 -17.72084 -17.33002 -16.85414 -16.80557 -16.39667 -16.08044 -15.81263 -15.70168 -15.50548 -15.06544 -14.65003 -14.51654 -14.47543 -14.27923 -13.88192 -13.78515 -13.63116 -13.38886 -13.17290 -13.00039 -12.97032 -12.93993 -12.73375 -12.66443 -12.46673 -12.28267 -12.08907 -12.04874 -11.92353 -11.63407 -11.38747 -11.13661 -10.72643 -10.70650 -10.29620 -10.09919 -9.71752 -9.05019 -8.32000 -6.46001 1.01841 1.11196 1.38231 1.39315 1.50521 1.52133 1.69637 1.95348 2.25764 2.37066 2.41707 2.99441 3.11247 3.53447 3.92619 3.98267 4.00255 4.05286 4.14643 4.16551 4.29857 4.63358 4.72191 4.74469 4.74934 4.79433 4.82019 4.89546 4.91797 4.96649 4.98046 5.02922 5.03413 5.11212 5.24395 5.26062 5.34260 5.40753 5.42370 5.57595 5.60180 5.74577 5.86816 5.97753 6.31292 6.53358 6.64048 6.72195 7.13345 7.18797 7.23783 7.37360 8.75389 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.001842 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.402174 B =15198.059948 C =15547.898200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.116 0.884 4 N -0.715 5.715 5 C 0.719 3.281 6 O -0.592 6.592 7 N -0.638 5.638 8 C 0.284 3.716 9 C -0.290 4.290 10 C 0.057 3.943 11 N -0.345 5.345 12 C 0.272 3.728 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.018 3.982 16 N -0.920 5.920 17 Si 0.972 3.028 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.273 1.273 21 N -0.350 5.350 22 C 0.518 3.482 23 O -0.559 6.559 24 N -0.704 5.704 25 C 0.165 3.835 26 C -0.161 4.161 27 C -0.149 4.149 28 C -0.164 4.164 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.412 0.588 33 H 0.419 0.581 34 H 0.171 0.829 35 H 0.202 0.798 36 H 0.021 0.979 37 H 0.060 0.940 38 H 0.272 0.728 39 H 0.416 0.584 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 1.808 -33.341 34.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.134 0.866 4 N -0.372 5.372 5 C 0.419 3.581 6 O -0.470 6.470 7 N -0.289 5.289 8 C 0.029 3.971 9 C -0.321 4.321 10 C -0.092 4.092 11 N -0.127 5.127 12 C 0.153 3.847 13 C -0.585 4.585 14 H 0.070 0.930 15 C -0.182 4.182 16 N -0.559 5.559 17 Si 0.796 3.204 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.198 1.198 21 N -0.181 5.181 22 C 0.304 3.696 23 O -0.438 6.438 24 N -0.358 5.358 25 C 0.080 3.920 26 C -0.219 4.219 27 C -0.207 4.207 28 C -0.222 4.222 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.250 0.750 33 H 0.256 0.744 34 H 0.188 0.812 35 H 0.219 0.781 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.254 0.746 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.556 1.143 -32.390 33.066 hybrid contribution -0.295 -0.614 0.495 0.842 sum -6.851 0.529 -31.894 32.626 Atomic orbital electron populations 1.22139 0.91258 1.03411 1.04449 1.20768 0.96594 0.97537 0.81563 0.86627 1.44654 1.70904 1.14637 1.07015 1.15567 0.77971 0.84560 0.80028 1.90827 1.57039 1.14859 1.84259 1.41366 1.68232 1.13919 1.05373 1.19071 0.99997 0.91931 0.86124 1.21696 1.17939 0.95444 0.97064 1.23180 0.98731 0.93645 0.93633 1.48816 1.48864 1.05495 1.09514 1.19337 0.95426 0.98796 0.71092 1.21408 1.23016 1.18091 0.96021 0.92992 1.25737 0.96241 0.99081 0.97170 1.69997 1.34601 1.41670 1.09616 0.85348 0.78673 0.78749 0.77633 1.19911 1.19616 1.19751 1.77252 1.29596 1.14303 0.96963 1.20540 0.79593 0.84151 0.85350 1.90663 1.38772 1.27451 1.86906 1.46006 1.53229 1.32242 1.04277 1.20484 0.93823 0.92807 0.84870 1.22190 1.01312 0.95665 1.02767 1.22056 1.02362 1.00953 0.95310 1.22210 0.95079 1.02140 1.02740 0.87892 0.92088 0.91742 0.75035 0.74439 0.81221 0.78098 0.96149 0.92211 0.91862 0.74629 0.91920 0.90828 0.93101 0.91048 0.89971 0.90655 0.93262 0.90689 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.38 71.98 0.68 -1.25 16 2 C 0.14 2.35 2.98 44.25 0.13 2.48 16 3 H 0.12 1.96 7.58 -2.39 -0.02 1.94 16 4 N -0.71 -15.35 4.96 -461.39 -2.29 -17.64 16 5 C 0.72 21.04 8.50 179.05 1.52 22.57 16 6 O -0.59 -20.12 13.13 -4.00 -0.05 -20.17 16 7 N -0.64 -20.51 5.46 -321.23 -1.75 -22.27 16 8 C 0.28 11.70 8.11 133.31 1.08 12.79 16 9 C -0.29 -11.52 9.61 22.11 0.21 -11.31 16 10 C 0.06 2.26 11.44 83.52 0.96 3.22 16 11 N -0.34 -16.52 3.67 -351.83 -1.29 -17.81 16 12 C 0.27 14.35 6.26 85.63 0.54 14.89 16 13 C -0.55 -31.33 9.24 25.60 0.24 -31.09 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 15 C 0.02 1.01 5.46 84.65 0.46 1.47 16 16 N -0.92 -52.63 13.29 21.45 0.28 -52.34 16 17 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 N -0.35 -16.74 12.42 -54.44 -0.68 -17.42 16 22 C 0.52 8.24 6.64 87.66 0.58 8.82 16 23 O -0.56 -12.63 12.05 -3.01 -0.04 -12.67 16 24 N -0.70 -6.66 5.00 -422.90 -2.11 -8.78 16 25 C 0.17 1.59 1.06 3.61 0.00 1.59 16 26 C -0.16 -1.88 8.40 71.98 0.60 -1.27 16 27 C -0.15 -0.56 8.59 71.98 0.62 0.06 16 28 C -0.16 -2.12 8.40 71.98 0.60 -1.51 16 29 H 0.10 0.58 7.56 -2.39 -0.02 0.56 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.41 8.15 7.80 -92.71 -0.72 7.43 16 33 H 0.42 11.39 8.84 -92.71 -0.82 10.57 16 34 H 0.17 6.44 5.91 -2.91 -0.02 6.42 16 35 H 0.20 6.30 8.06 -2.91 -0.02 6.28 16 36 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 3.06 8.07 -2.39 -0.02 3.04 16 38 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 39 H 0.42 1.51 7.89 -92.71 -0.73 0.77 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.05 0.91 6.17 -2.39 -0.01 0.90 16 43 H 0.07 0.19 8.14 -2.38 -0.02 0.18 16 44 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.05 0.96 6.17 -2.39 -0.01 0.95 16 47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -74.67 396.47 1.06 -73.61 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -1.27 Total: 27.82 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 8.23 Total: 21.45 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -7.83 Total: -136.25 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.09 Total: -32.84 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -74.67 1.06 -73.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173350038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.138 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds