Wall clock time and date at job start Tue Mar 31 2020 19:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46709 * 2 1 4 4 C 1.53002 * 109.46703 * 119.99626 * 2 1 3 5 5 N 1.46908 * 109.46707 * 174.99790 * 4 2 1 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 2 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 2 11 11 N 1.46500 * 109.47101 * 239.99856 * 2 1 3 12 12 C 1.34771 * 120.00096 * 85.00091 * 11 2 1 13 13 O 1.21602 * 119.99907 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00132 * 179.97438 * 12 11 2 15 15 C 1.40198 * 120.00132 * 179.97438 * 14 12 11 16 16 C 1.40409 * 125.97006 * 359.72126 * 15 14 12 17 17 C 1.35243 * 107.86217 * 179.82511 * 16 15 14 18 18 N 1.34965 * 107.86003 * 0.42565 * 17 16 15 19 19 C 1.46504 * 125.97533 * 179.70587 * 18 17 16 20 20 C 1.50697 * 109.47048 * 125.00343 * 19 18 17 21 21 H 1.07998 * 119.99879 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00098 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99817 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00081 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46732 * 60.00077 * 24 22 20 26 26 H 1.48503 * 109.46729 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47342 * 300.00154 * 24 22 20 28 28 N 1.31202 * 125.97289 * 180.02562 * 15 14 12 29 29 H 1.08999 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47496 * 300.00190 * 1 2 3 31 31 H 1.08998 * 109.47198 * 59.99988 * 1 2 3 32 32 H 1.09003 * 109.46906 * 55.00305 * 4 2 1 33 33 H 1.08999 * 109.47302 * 294.99804 * 4 2 1 34 34 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 35 35 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 36 36 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 37 37 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 38 38 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 39 39 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 40 40 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 41 41 H 1.09003 * 109.54070 * 297.56443 * 10 5 4 42 42 H 0.96996 * 119.99978 * 265.00043 * 11 2 1 43 43 H 0.96996 * 119.99942 * 0.02562 * 14 12 11 44 44 H 1.07995 * 126.06603 * 359.97438 * 16 15 14 45 45 H 1.07996 * 126.06972 * 180.13716 * 17 16 15 46 46 H 1.08998 * 109.46746 * 245.00477 * 19 18 17 47 47 H 1.08998 * 109.47217 * 4.99988 * 19 18 17 48 48 H 0.97003 * 120.00447 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.1094 0.4563 0.8045 7 6 5.6273 0.2866 0.6984 8 8 6.1364 -0.2007 1.9429 9 6 5.5686 -1.4492 2.3480 10 6 4.0502 -1.2969 2.4719 11 7 2.0183 -0.6906 -1.1961 12 6 2.1471 -0.0184 -2.3571 13 8 1.8574 1.1614 -2.4118 14 7 2.5968 -0.6536 -3.4574 15 6 2.7302 0.0456 -4.6652 16 6 2.4281 1.4013 -4.8711 17 6 2.6949 1.6940 -6.1642 18 7 3.1397 0.5678 -6.7603 19 6 3.5374 0.4366 -8.1642 20 6 4.9381 -0.1140 -8.2401 21 1 5.4782 -0.3429 -7.3333 22 6 5.5306 -0.3246 -9.4672 23 7 4.8730 -0.0453 -10.5714 24 14 7.2671 -1.0065 -9.5612 25 1 7.3115 -2.3393 -8.9079 26 1 7.6702 -1.1395 -10.9843 27 1 8.1997 -0.0833 -8.8663 28 7 3.1539 -0.4538 -5.8021 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6052 -1.7198 1.2952 33 1 1.7515 -0.1582 2.1370 34 1 3.8791 1.2084 1.5590 35 1 3.7104 0.7725 -0.1593 36 1 6.0860 1.2485 0.4691 37 1 5.8595 -0.4254 -0.0936 38 1 5.7983 -2.2120 1.6041 39 1 5.9852 -1.7430 3.3114 40 1 3.6072 -2.2601 2.7248 41 1 3.8196 -0.5735 3.2540 42 1 2.2490 -1.6318 -1.1526 43 1 2.8275 -1.5947 -3.4138 44 1 2.0519 2.0888 -4.1280 45 1 2.5694 2.6568 -6.6371 46 1 2.8525 -0.2409 -8.6740 47 1 3.5050 1.4148 -8.6440 48 1 5.2896 -0.1938 -11.4347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173355511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:23 Heat of formation + Delta-G solvation = 23.312060 kcal Electronic energy + Delta-G solvation = -29423.574211 eV Core-core repulsion = 25323.112636 eV Total energy + Delta-G solvation = -4100.461575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78983 -40.15315 -39.37740 -37.12567 -34.85551 -34.45734 -33.33422 -31.58109 -31.45291 -30.36760 -29.22889 -28.34475 -26.58924 -24.99902 -24.38074 -23.27704 -22.17463 -21.24815 -20.52875 -20.21283 -19.73045 -18.02053 -17.05910 -16.77067 -16.54788 -16.36326 -16.04720 -15.51868 -15.39618 -15.19539 -15.09673 -14.77809 -14.51143 -14.34625 -14.02285 -13.80583 -13.31528 -13.05876 -12.77730 -12.58560 -12.52115 -12.29165 -12.19461 -11.99135 -11.95716 -11.72649 -11.69795 -11.10153 -11.03584 -10.84281 -10.78826 -10.40594 -10.23079 -10.03438 -9.98469 -9.64645 -9.47685 -9.18866 -8.81280 -8.60606 -8.06117 -7.37289 -6.21945 -4.26970 2.42675 2.70892 3.15315 3.27240 3.29664 3.30336 3.35108 3.57449 3.67401 3.88860 4.23706 4.30122 4.40888 4.54249 4.59615 4.77332 4.81639 4.86066 4.93001 5.02119 5.09473 5.13053 5.19952 5.29969 5.32793 5.40493 5.43437 5.54443 5.57875 5.66538 5.71495 5.85871 5.95449 6.27511 6.35151 6.51549 6.51936 6.58013 6.65596 6.83097 6.91070 7.05480 7.16241 7.54615 7.72135 7.86653 8.03599 8.10387 8.65615 8.70381 8.83568 9.38485 10.86679 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.002524 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.275395 B =11090.553880 C =12661.228250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.091 0.909 4 C 0.045 3.955 5 N -0.532 5.532 6 C 0.012 3.988 7 C 0.064 3.936 8 O -0.387 6.387 9 C 0.063 3.937 10 C 0.018 3.982 11 N -0.729 5.729 12 C 0.714 3.286 13 O -0.572 6.572 14 N -0.643 5.643 15 C 0.277 3.723 16 C -0.286 4.286 17 C 0.050 3.950 18 N -0.321 5.321 19 C 0.259 3.741 20 C -0.528 4.528 21 H 0.068 0.932 22 C 0.062 3.938 23 N -0.896 5.896 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.308 5.308 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.400 0.600 43 H 0.406 0.594 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 -2.126 26.720 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.109 0.891 4 C -0.083 4.083 5 N -0.258 5.258 6 C -0.116 4.116 7 C -0.013 4.013 8 O -0.305 6.305 9 C -0.014 4.014 10 C -0.110 4.110 11 N -0.386 5.386 12 C 0.413 3.587 13 O -0.448 6.448 14 N -0.293 5.293 15 C 0.023 3.977 16 C -0.317 4.317 17 C -0.100 4.100 18 N -0.103 5.103 19 C 0.142 3.858 20 C -0.566 4.566 21 H 0.086 0.914 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.200 1.200 28 N -0.139 5.139 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.235 0.765 43 H 0.241 0.759 44 H 0.178 0.822 45 H 0.184 0.816 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.469 -2.334 25.498 26.183 hybrid contribution 0.382 -0.176 0.677 0.796 sum -5.088 -2.510 26.175 26.783 Atomic orbital electron populations 1.22189 0.94829 1.02369 1.02960 1.20863 0.93881 0.97265 0.82480 0.89103 1.22527 0.87608 1.01453 0.96684 1.62255 1.04880 1.28717 1.29904 1.22920 0.96045 0.90214 1.02377 1.22684 0.92195 1.00294 0.86166 1.87991 1.65225 1.37949 1.39369 1.22639 0.91397 0.86598 1.00761 1.22799 0.96696 1.01134 0.90407 1.44946 1.71641 1.13954 1.08019 1.15640 0.78329 0.84930 0.79810 1.90863 1.56110 1.13979 1.83859 1.41390 1.68292 1.13332 1.06295 1.18789 1.01536 0.91551 0.85867 1.21500 1.17742 0.95583 0.96924 1.22550 1.00398 0.93213 0.93853 1.49047 1.46453 1.04570 1.10243 1.19714 0.96879 0.99253 0.69977 1.21226 0.98251 1.43914 0.93258 0.91359 1.24943 0.98754 0.95213 0.95167 1.69909 1.37859 1.47893 0.97774 0.86390 0.83454 0.79711 0.76958 1.19944 1.21069 1.20037 1.77324 1.26862 1.13621 0.96133 0.92305 0.91768 0.91224 0.89694 0.93023 0.94008 0.88421 0.88321 0.92046 0.92181 0.88589 0.89612 0.93940 0.76525 0.75914 0.82228 0.81626 0.93804 0.92596 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 2 C 0.16 1.32 1.88 -67.93 -0.13 1.19 16 3 H 0.09 0.92 6.05 -51.93 -0.31 0.61 16 4 C 0.05 0.28 4.84 -3.82 -0.02 0.26 16 5 N -0.53 -4.02 4.61 -234.28 -1.08 -5.10 16 6 C 0.01 0.11 4.90 -3.70 -0.02 0.09 16 7 C 0.06 0.62 7.01 37.21 0.26 0.88 16 8 O -0.39 -4.00 10.83 -35.23 -0.38 -4.38 16 9 C 0.06 0.47 7.01 37.21 0.26 0.73 16 10 C 0.02 0.12 5.63 -3.71 -0.02 0.10 16 11 N -0.73 -6.94 4.27 -58.67 -0.25 -7.19 16 12 C 0.71 10.03 8.27 -86.92 -0.72 9.31 16 13 O -0.57 -9.83 13.13 5.28 0.07 -9.77 16 14 N -0.64 -9.89 5.46 -15.50 -0.08 -9.98 16 15 C 0.28 5.56 8.11 -154.36 -1.25 4.31 16 16 C -0.29 -5.71 9.61 -39.83 -0.38 -6.09 16 17 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 18 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 19 C 0.26 6.64 6.26 -5.19 -0.03 6.60 16 20 C -0.53 -14.77 9.24 -34.44 -0.32 -15.09 16 21 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.90 -25.46 13.29 55.43 0.74 -24.73 16 24 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.04 5.54 -51.93 -0.29 0.76 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.40 3.07 8.62 -40.82 -0.35 2.71 16 43 H 0.41 5.17 8.84 -40.82 -0.36 4.81 16 44 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 45 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 46 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 1.40 8.07 -51.93 -0.42 0.99 16 48 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -33.05 390.63 -9.78 -42.83 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.50 Total: 6.67 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -2.31 Total: 3.83 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.52 Total: -61.49 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.31 Total: -14.15 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.05 -9.78 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.140 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds