Wall clock time and date at job start Tue Mar 31 2020 19:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46709 * 2 1 4 4 C 1.53002 * 109.46703 * 119.99626 * 2 1 3 5 5 N 1.46908 * 109.46707 * 174.99790 * 4 2 1 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 2 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 2 11 11 N 1.46500 * 109.47101 * 239.99856 * 2 1 3 12 12 C 1.34771 * 120.00096 * 85.00091 * 11 2 1 13 13 O 1.21602 * 119.99907 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00132 * 179.97438 * 12 11 2 15 15 C 1.40198 * 120.00132 * 179.97438 * 14 12 11 16 16 C 1.40409 * 125.97006 * 359.72126 * 15 14 12 17 17 C 1.35243 * 107.86217 * 179.82511 * 16 15 14 18 18 N 1.34965 * 107.86003 * 0.42565 * 17 16 15 19 19 C 1.46504 * 125.97533 * 179.70587 * 18 17 16 20 20 C 1.50697 * 109.47048 * 125.00343 * 19 18 17 21 21 H 1.07998 * 119.99879 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00098 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99817 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00081 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46732 * 60.00077 * 24 22 20 26 26 H 1.48503 * 109.46729 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47342 * 300.00154 * 24 22 20 28 28 N 1.31202 * 125.97289 * 180.02562 * 15 14 12 29 29 H 1.08999 * 109.47418 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47496 * 300.00190 * 1 2 3 31 31 H 1.08998 * 109.47198 * 59.99988 * 1 2 3 32 32 H 1.09003 * 109.46906 * 55.00305 * 4 2 1 33 33 H 1.08999 * 109.47302 * 294.99804 * 4 2 1 34 34 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 35 35 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 36 36 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 37 37 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 38 38 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 39 39 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 40 40 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 41 41 H 1.09003 * 109.54070 * 297.56443 * 10 5 4 42 42 H 0.96996 * 119.99978 * 265.00043 * 11 2 1 43 43 H 0.96996 * 119.99942 * 0.02562 * 14 12 11 44 44 H 1.07995 * 126.06603 * 359.97438 * 16 15 14 45 45 H 1.07996 * 126.06972 * 180.13716 * 17 16 15 46 46 H 1.08998 * 109.46746 * 245.00477 * 19 18 17 47 47 H 1.08998 * 109.47217 * 4.99988 * 19 18 17 48 48 H 0.97003 * 120.00447 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.1094 0.4563 0.8045 7 6 5.6273 0.2866 0.6984 8 8 6.1364 -0.2007 1.9429 9 6 5.5686 -1.4492 2.3480 10 6 4.0502 -1.2969 2.4719 11 7 2.0183 -0.6906 -1.1961 12 6 2.1471 -0.0184 -2.3571 13 8 1.8574 1.1614 -2.4118 14 7 2.5968 -0.6536 -3.4574 15 6 2.7302 0.0456 -4.6652 16 6 2.4281 1.4013 -4.8711 17 6 2.6949 1.6940 -6.1642 18 7 3.1397 0.5678 -6.7603 19 6 3.5374 0.4366 -8.1642 20 6 4.9381 -0.1140 -8.2401 21 1 5.4782 -0.3429 -7.3333 22 6 5.5306 -0.3246 -9.4672 23 7 4.8730 -0.0453 -10.5714 24 14 7.2671 -1.0065 -9.5612 25 1 7.3115 -2.3393 -8.9079 26 1 7.6702 -1.1395 -10.9843 27 1 8.1997 -0.0833 -8.8663 28 7 3.1539 -0.4538 -5.8021 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6052 -1.7198 1.2952 33 1 1.7515 -0.1582 2.1370 34 1 3.8791 1.2084 1.5590 35 1 3.7104 0.7725 -0.1593 36 1 6.0860 1.2485 0.4691 37 1 5.8595 -0.4254 -0.0936 38 1 5.7983 -2.2120 1.6041 39 1 5.9852 -1.7430 3.3114 40 1 3.6072 -2.2601 2.7248 41 1 3.8196 -0.5735 3.2540 42 1 2.2490 -1.6318 -1.1526 43 1 2.8275 -1.5947 -3.4138 44 1 2.0519 2.0888 -4.1280 45 1 2.5694 2.6568 -6.6371 46 1 2.8525 -0.2409 -8.6740 47 1 3.5050 1.4148 -8.6440 48 1 5.2896 -0.1938 -11.4347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173355511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:22 Heat of formation + Delta-G solvation = -0.920152 kcal Electronic energy + Delta-G solvation = -29424.624998 eV Core-core repulsion = 25323.112636 eV Total energy + Delta-G solvation = -4101.512362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20146 -41.18350 -40.35409 -37.94054 -36.16087 -35.43798 -35.22917 -32.97964 -32.13976 -31.62722 -30.85703 -28.97342 -28.47611 -25.71296 -25.03557 -25.00492 -23.43586 -22.16656 -21.84293 -21.21458 -20.98606 -19.20307 -18.67094 -18.18273 -17.65365 -17.35953 -17.01163 -16.69765 -16.48520 -16.12620 -16.02742 -15.88697 -15.67554 -15.48777 -15.34100 -14.98151 -14.49695 -14.23849 -13.96218 -13.78471 -13.75431 -13.57819 -13.24580 -13.02917 -12.92199 -12.72575 -12.66975 -12.56656 -12.35669 -12.26409 -12.04727 -11.73091 -11.58870 -11.44741 -11.36988 -11.05000 -10.70858 -10.67905 -10.13232 -9.68819 -9.39754 -9.01262 -8.31406 -6.45767 1.11495 1.19543 1.39045 1.41065 1.49937 1.75888 2.15183 2.37319 2.47460 2.71326 2.93617 2.99935 3.24069 3.62339 3.91166 3.98261 4.00843 4.13721 4.18254 4.26275 4.28992 4.31063 4.37491 4.58682 4.61953 4.71810 4.76613 4.78808 4.80142 4.81371 4.90751 4.91619 4.98023 5.00662 5.02619 5.07665 5.19995 5.33565 5.56752 5.59586 5.79693 5.88722 5.94337 5.97594 6.02336 6.16087 6.31884 6.65577 6.83186 7.20553 7.24088 7.52250 8.75746 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.002524 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.275395 B =11090.553880 C =12661.228250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.160 3.840 3 H 0.070 0.930 4 C 0.053 3.947 5 N -0.538 5.538 6 C 0.021 3.979 7 C 0.063 3.937 8 O -0.406 6.406 9 C 0.056 3.944 10 C 0.021 3.979 11 N -0.707 5.707 12 C 0.713 3.287 13 O -0.603 6.603 14 N -0.638 5.638 15 C 0.287 3.713 16 C -0.291 4.291 17 C 0.054 3.946 18 N -0.346 5.346 19 C 0.274 3.726 20 C -0.548 4.548 21 H 0.052 0.948 22 C 0.018 3.982 23 N -0.921 5.921 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.270 1.270 28 N -0.349 5.349 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.413 0.587 43 H 0.419 0.581 44 H 0.167 0.833 45 H 0.199 0.801 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -3.083 28.904 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.088 0.912 4 C -0.075 4.075 5 N -0.264 5.264 6 C -0.107 4.107 7 C -0.014 4.014 8 O -0.325 6.325 9 C -0.021 4.021 10 C -0.106 4.106 11 N -0.363 5.363 12 C 0.413 3.587 13 O -0.481 6.481 14 N -0.289 5.289 15 C 0.031 3.969 16 C -0.322 4.322 17 C -0.094 4.094 18 N -0.128 5.128 19 C 0.155 3.845 20 C -0.586 4.586 21 H 0.071 0.929 22 C -0.182 4.182 23 N -0.560 5.560 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.195 1.195 28 N -0.180 5.180 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.061 0.939 42 H 0.250 0.750 43 H 0.256 0.744 44 H 0.184 0.816 45 H 0.216 0.784 46 H 0.038 0.962 47 H 0.075 0.925 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.538 -3.328 27.744 28.486 hybrid contribution 0.331 0.127 0.158 0.388 sum -5.208 -3.201 27.902 28.564 Atomic orbital electron populations 1.22125 0.93946 1.03196 1.02464 1.20991 0.94469 0.96485 0.82541 0.91162 1.22530 0.86705 1.02575 0.95658 1.62283 1.05641 1.27601 1.30854 1.22729 0.95528 0.91093 1.01386 1.22649 0.92791 1.00015 0.85936 1.87964 1.65959 1.39293 1.39327 1.22864 0.92312 0.85365 1.01527 1.22826 0.95945 1.02217 0.89647 1.44853 1.70173 1.14379 1.06874 1.15785 0.77969 0.84651 0.80339 1.90834 1.57409 1.15507 1.84385 1.41419 1.68393 1.13859 1.05252 1.19087 0.99388 0.91947 0.86470 1.21669 1.17837 0.95753 0.96972 1.23144 0.98716 0.93601 0.93957 1.48805 1.48504 1.05754 1.09773 1.19307 0.95344 0.98432 0.71437 1.21379 0.99420 1.44783 0.92996 0.92946 1.25739 1.02611 0.95182 0.94663 1.69989 1.39435 1.48293 0.98264 0.85413 0.78703 0.78914 0.77484 1.19807 1.19794 1.19483 1.77242 1.29155 1.14511 0.97117 0.90770 0.89872 0.94128 0.87456 0.91647 0.94195 0.90243 0.88464 0.93045 0.92459 0.86745 0.87260 0.93910 0.75006 0.74445 0.81597 0.78404 0.96152 0.92463 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.16 2.34 1.88 44.99 0.08 2.43 16 3 H 0.07 1.38 6.05 -2.39 -0.01 1.37 16 4 C 0.05 0.50 4.84 86.30 0.42 0.91 16 5 N -0.54 -6.93 4.61 -895.14 -4.13 -11.05 16 6 C 0.02 0.37 4.90 86.31 0.42 0.79 16 7 C 0.06 1.22 7.01 72.02 0.50 1.72 16 8 O -0.41 -8.10 10.83 -148.98 -1.61 -9.71 16 9 C 0.06 0.73 7.01 72.02 0.50 1.24 16 10 C 0.02 0.22 5.63 86.31 0.49 0.71 16 11 N -0.71 -12.42 4.27 -457.80 -1.95 -14.37 16 12 C 0.71 19.64 8.27 179.06 1.48 21.12 16 13 O -0.60 -20.70 13.13 -4.04 -0.05 -20.75 16 14 N -0.64 -19.35 5.46 -321.22 -1.75 -21.11 16 15 C 0.29 11.59 8.11 133.32 1.08 12.67 16 16 C -0.29 -11.60 9.61 22.11 0.21 -11.39 16 17 C 0.05 2.19 11.44 83.52 0.96 3.14 16 18 N -0.35 -16.55 3.67 -351.85 -1.29 -17.84 16 19 C 0.27 14.40 6.26 85.63 0.54 14.93 16 20 C -0.55 -31.23 9.24 25.60 0.24 -30.99 16 21 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 22 C 0.02 1.02 5.46 84.66 0.46 1.49 16 23 N -0.92 -52.63 13.29 21.45 0.28 -52.34 16 24 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 N -0.35 -16.44 12.42 -54.43 -0.68 -17.12 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 1.69 5.54 -2.39 -0.01 1.67 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.41 5.38 8.62 -92.71 -0.80 4.58 16 43 H 0.42 10.35 8.84 -92.71 -0.82 9.53 16 44 H 0.17 6.45 5.91 -2.91 -0.02 6.43 16 45 H 0.20 6.35 8.06 -2.91 -0.02 6.33 16 46 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 2.94 8.07 -2.39 -0.02 2.93 16 48 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -72.45 390.63 -1.72 -74.17 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.63 Total: 26.85 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 8.07 Total: 17.36 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -9.51 Total: -133.83 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.67 Total: -30.46 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.45 -1.72 -74.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.245 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds