Wall clock time and date at job start Tue Mar 31 2020 19:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47369 * 2 1 4 4 C 1.53004 * 109.46905 * 239.99838 * 2 1 3 5 5 N 1.46906 * 109.46969 * 185.00055 * 4 2 1 6 6 C 1.47013 * 110.99773 * 293.63751 * 5 4 2 7 7 C 1.53100 * 109.25459 * 177.60689 * 6 5 4 8 8 O 1.43012 * 109.25986 * 56.85220 * 7 6 5 9 9 C 1.43024 * 113.73584 * 301.32937 * 8 7 6 10 10 C 1.47008 * 110.99908 * 170.00037 * 5 4 2 11 11 N 1.46503 * 109.46992 * 120.00063 * 2 1 3 12 12 C 1.34775 * 120.00069 * 274.99829 * 11 2 1 13 13 O 1.21594 * 119.99767 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.40192 * 120.00049 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97032 * 359.97438 * 15 14 12 17 17 C 1.35245 * 107.86627 * 179.70432 * 16 15 14 18 18 N 1.34964 * 107.85965 * 0.26430 * 17 16 15 19 19 C 1.46495 * 125.98003 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47002 * 125.00169 * 19 18 17 21 21 H 1.07998 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00294 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99549 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47283 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46962 * 120.00099 * 24 22 20 27 27 H 1.48502 * 109.46923 * 239.99961 * 24 22 20 28 28 N 1.31206 * 125.97560 * 180.17721 * 15 14 12 29 29 H 1.08995 * 109.47125 * 300.00199 * 1 2 3 30 30 H 1.08999 * 109.46989 * 59.99593 * 1 2 3 31 31 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47228 * 305.00057 * 4 2 1 33 33 H 1.08997 * 109.46896 * 65.00665 * 4 2 1 34 34 H 1.08995 * 109.50775 * 297.54232 * 6 5 4 35 35 H 1.09001 * 109.51166 * 57.67417 * 6 5 4 36 36 H 1.08999 * 109.51000 * 296.91052 * 7 6 5 37 37 H 1.09003 * 109.53865 * 176.80500 * 7 6 5 38 38 H 1.09001 * 109.50552 * 298.73704 * 9 8 7 39 39 H 1.08998 * 109.54350 * 178.63007 * 9 8 7 40 40 H 1.08994 * 109.51079 * 302.33015 * 10 5 4 41 41 H 1.09006 * 109.50365 * 62.45771 * 10 5 4 42 42 H 0.97005 * 119.99875 * 95.00134 * 11 2 1 43 43 H 0.97005 * 119.99878 * 0.02562 * 14 12 11 44 44 H 1.08002 * 126.07048 * 359.97438 * 16 15 14 45 45 H 1.08000 * 126.07435 * 180.26799 * 17 16 15 46 46 H 1.08994 * 109.47532 * 245.00383 * 19 18 17 47 47 H 1.08999 * 109.47116 * 5.01096 * 19 18 17 48 48 H 0.97002 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5041 -0.8268 -1.1904 6 6 4.1318 0.4996 -1.2797 7 6 5.6502 0.3491 -1.1546 8 8 6.1210 -0.5420 -2.1693 9 6 5.5307 -1.8435 -2.1116 10 6 4.0111 -1.7152 -2.2463 11 7 2.0183 -0.6906 1.1962 12 6 2.1471 -0.0183 2.3572 13 8 1.8584 1.1616 2.4116 14 7 2.5958 -0.6538 3.4577 15 6 2.7292 0.0454 4.6655 16 6 2.4337 1.4027 4.8696 17 6 2.6881 1.6924 6.1659 18 7 3.1335 0.5664 6.7620 19 6 3.5262 0.4339 8.1671 20 6 2.7411 -0.6832 8.8049 21 1 2.0219 -1.2391 8.2218 22 6 2.9411 -0.9955 10.1329 23 7 3.8165 -0.3182 10.8431 24 14 1.9683 -2.3807 10.9233 25 1 1.0558 -2.9813 9.9175 26 1 2.9040 -3.4191 11.4246 27 1 1.1725 -1.8431 12.0559 28 7 3.1555 -0.4532 5.8018 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7199 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 3.8889 0.9534 -2.2405 35 1 3.7612 1.1327 -0.4734 36 1 5.8963 -0.0549 -0.1726 37 1 6.1244 1.3229 -1.2768 38 1 5.7733 -2.3112 -1.1574 39 1 5.9179 -2.4559 -2.9260 40 1 3.5525 -2.6988 -2.1457 41 1 3.7663 -1.2968 -3.2226 42 1 2.2490 -1.6318 1.1526 43 1 2.8265 -1.5950 3.4142 44 1 2.0643 2.0921 4.1247 45 1 2.5580 2.6540 6.6401 46 1 4.5912 0.2099 8.2271 47 1 3.3211 1.3673 8.6912 48 1 3.9568 -0.5376 11.7775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173355522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:26 Heat of formation + Delta-G solvation = 20.169727 kcal Electronic energy + Delta-G solvation = -29216.515880 eV Core-core repulsion = 25115.918043 eV Total energy + Delta-G solvation = -4100.597836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.71264 -40.09965 -39.39721 -37.07553 -34.90017 -34.44013 -33.32613 -31.61839 -31.44647 -30.33610 -29.20768 -28.36402 -26.57544 -24.95947 -24.41617 -23.27502 -22.15951 -21.10254 -20.62729 -20.26666 -19.71336 -17.97448 -17.05037 -16.78143 -16.54249 -16.42936 -16.01286 -15.48217 -15.38153 -15.21650 -15.11920 -14.77380 -14.53615 -14.23850 -14.10039 -13.78169 -13.32322 -13.03661 -12.77275 -12.65702 -12.44316 -12.29310 -12.16282 -12.02879 -11.96886 -11.75031 -11.70984 -11.13910 -11.01715 -10.86092 -10.84182 -10.35724 -10.23735 -10.03269 -9.99790 -9.61441 -9.43842 -9.12352 -8.84488 -8.61360 -8.03937 -7.35020 -6.21946 -4.26652 2.47299 2.74106 3.18205 3.23622 3.26347 3.31093 3.37781 3.52705 3.69936 3.92022 4.27905 4.31146 4.42664 4.50931 4.55385 4.73905 4.77791 4.86243 4.91955 5.03134 5.08757 5.13208 5.16794 5.26651 5.28862 5.38921 5.43292 5.50674 5.56725 5.61213 5.74629 5.87824 5.98094 6.30839 6.38099 6.49176 6.52074 6.60039 6.68818 6.78269 6.92922 7.07068 7.18702 7.57243 7.72961 7.87833 8.06928 8.11964 8.70826 8.72280 8.84870 9.38838 10.86755 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.002189 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.690361 B =12789.284612 C =13182.240376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.089 0.911 4 C 0.045 3.955 5 N -0.532 5.532 6 C 0.016 3.984 7 C 0.064 3.936 8 O -0.387 6.387 9 C 0.063 3.937 10 C 0.018 3.982 11 N -0.726 5.726 12 C 0.715 3.285 13 O -0.573 6.573 14 N -0.644 5.644 15 C 0.278 3.722 16 C -0.286 4.286 17 C 0.049 3.951 18 N -0.322 5.322 19 C 0.259 3.741 20 C -0.526 4.526 21 H 0.069 0.931 22 C 0.061 3.939 23 N -0.896 5.896 24 Si 0.907 3.093 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.309 5.309 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.398 0.602 43 H 0.406 0.594 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -1.174 -28.072 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 H 0.107 0.893 4 C -0.083 4.083 5 N -0.257 5.257 6 C -0.112 4.112 7 C -0.013 4.013 8 O -0.306 6.306 9 C -0.014 4.014 10 C -0.110 4.110 11 N -0.381 5.381 12 C 0.414 3.586 13 O -0.449 6.449 14 N -0.294 5.294 15 C 0.023 3.977 16 C -0.317 4.317 17 C -0.101 4.101 18 N -0.104 5.104 19 C 0.141 3.859 20 C -0.564 4.564 21 H 0.087 0.913 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.734 3.266 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.140 5.140 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.232 0.768 43 H 0.240 0.760 44 H 0.178 0.822 45 H 0.184 0.816 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.061 -1.269 -26.820 26.871 hybrid contribution -1.005 -0.699 -0.402 1.288 sum -2.065 -1.968 -27.222 27.371 Atomic orbital electron populations 1.22200 0.94970 1.02315 1.02950 1.20753 0.93490 0.97159 0.82434 0.89340 1.22504 0.87490 1.01513 0.96801 1.62169 1.05331 1.11546 1.46651 1.22845 0.95926 0.90797 1.01607 1.22669 0.92478 0.94346 0.91841 1.87989 1.65937 1.22964 1.53675 1.22651 0.91145 0.85120 1.02488 1.22793 0.96917 0.98093 0.93215 1.44848 1.71560 1.13758 1.07970 1.15624 0.78263 0.84907 0.79792 1.90850 1.56184 1.14010 1.83890 1.41393 1.68391 1.13273 1.06320 1.18791 1.01694 0.91432 0.85743 1.21502 1.17794 0.95570 0.96868 1.22548 1.00641 0.93233 0.93628 1.49034 1.47001 1.04452 1.09871 1.19720 0.97167 0.99379 0.69638 1.21306 1.22941 1.16820 0.95369 0.91272 1.24949 0.95414 0.96954 0.96839 1.69926 1.34064 1.40567 1.08863 0.86284 0.79750 0.81471 0.79058 1.19577 1.20725 1.20789 1.77321 1.27448 1.13344 0.95904 0.91208 0.91808 0.92382 0.89859 0.93015 0.93948 0.88983 0.91997 0.88375 0.92105 0.88556 0.89554 0.93992 0.76754 0.75973 0.82231 0.81641 0.93802 0.92591 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.48 37.16 0.35 -0.94 16 2 C 0.17 1.39 2.36 -67.93 -0.16 1.23 16 3 H 0.09 0.90 6.19 -51.93 -0.32 0.58 16 4 C 0.05 0.27 4.51 -3.82 -0.02 0.26 16 5 N -0.53 -3.81 4.45 -234.31 -1.04 -4.86 16 6 C 0.02 0.13 5.44 -3.71 -0.02 0.11 16 7 C 0.06 0.55 7.01 37.21 0.26 0.81 16 8 O -0.39 -3.71 10.83 -35.23 -0.38 -4.09 16 9 C 0.06 0.44 7.01 37.21 0.26 0.70 16 10 C 0.02 0.11 5.64 -3.72 -0.02 0.09 16 11 N -0.73 -7.09 4.81 -58.67 -0.28 -7.38 16 12 C 0.71 10.31 8.50 -86.92 -0.74 9.57 16 13 O -0.57 -10.07 13.13 5.28 0.07 -10.00 16 14 N -0.64 -10.10 5.45 -15.51 -0.08 -10.18 16 15 C 0.28 5.65 8.11 -154.37 -1.25 4.40 16 16 C -0.29 -5.77 9.61 -39.83 -0.38 -6.16 16 17 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 18 N -0.32 -7.59 3.67 -62.57 -0.23 -7.82 16 19 C 0.26 6.64 6.26 -5.19 -0.03 6.61 16 20 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 21 H 0.07 2.02 7.81 -52.49 -0.41 1.60 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 24 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 N -0.31 -7.20 12.42 31.44 0.39 -6.81 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 33 H 0.05 0.29 8.12 -51.93 -0.42 -0.13 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.84 6.49 -51.93 -0.34 0.50 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.40 8.09 -51.93 -0.42 -0.02 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.40 3.11 8.62 -40.82 -0.35 2.76 16 43 H 0.41 5.26 8.84 -40.82 -0.36 4.90 16 44 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 45 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 46 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 48 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -33.50 392.92 -9.84 -43.34 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.55 Total: 6.18 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.36 Total: 4.02 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.51 Total: -61.81 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.31 Total: -14.10 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.50 -9.84 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.507 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds