Wall clock time and date at job start Tue Mar 31 2020 19:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47369 * 2 1 4 4 C 1.53004 * 109.46905 * 239.99838 * 2 1 3 5 5 N 1.46906 * 109.46969 * 185.00055 * 4 2 1 6 6 C 1.47013 * 110.99773 * 293.63751 * 5 4 2 7 7 C 1.53100 * 109.25459 * 177.60689 * 6 5 4 8 8 O 1.43012 * 109.25986 * 56.85220 * 7 6 5 9 9 C 1.43024 * 113.73584 * 301.32937 * 8 7 6 10 10 C 1.47008 * 110.99908 * 170.00037 * 5 4 2 11 11 N 1.46503 * 109.46992 * 120.00063 * 2 1 3 12 12 C 1.34775 * 120.00069 * 274.99829 * 11 2 1 13 13 O 1.21594 * 119.99767 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.40192 * 120.00049 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97032 * 359.97438 * 15 14 12 17 17 C 1.35245 * 107.86627 * 179.70432 * 16 15 14 18 18 N 1.34964 * 107.85965 * 0.26430 * 17 16 15 19 19 C 1.46495 * 125.98003 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47002 * 125.00169 * 19 18 17 21 21 H 1.07998 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00294 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99549 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47283 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46962 * 120.00099 * 24 22 20 27 27 H 1.48502 * 109.46923 * 239.99961 * 24 22 20 28 28 N 1.31206 * 125.97560 * 180.17721 * 15 14 12 29 29 H 1.08995 * 109.47125 * 300.00199 * 1 2 3 30 30 H 1.08999 * 109.46989 * 59.99593 * 1 2 3 31 31 H 1.09003 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47228 * 305.00057 * 4 2 1 33 33 H 1.08997 * 109.46896 * 65.00665 * 4 2 1 34 34 H 1.08995 * 109.50775 * 297.54232 * 6 5 4 35 35 H 1.09001 * 109.51166 * 57.67417 * 6 5 4 36 36 H 1.08999 * 109.51000 * 296.91052 * 7 6 5 37 37 H 1.09003 * 109.53865 * 176.80500 * 7 6 5 38 38 H 1.09001 * 109.50552 * 298.73704 * 9 8 7 39 39 H 1.08998 * 109.54350 * 178.63007 * 9 8 7 40 40 H 1.08994 * 109.51079 * 302.33015 * 10 5 4 41 41 H 1.09006 * 109.50365 * 62.45771 * 10 5 4 42 42 H 0.97005 * 119.99875 * 95.00134 * 11 2 1 43 43 H 0.97005 * 119.99878 * 0.02562 * 14 12 11 44 44 H 1.08002 * 126.07048 * 359.97438 * 16 15 14 45 45 H 1.08000 * 126.07435 * 180.26799 * 17 16 15 46 46 H 1.08994 * 109.47532 * 245.00383 * 19 18 17 47 47 H 1.08999 * 109.47116 * 5.01096 * 19 18 17 48 48 H 0.97002 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5041 -0.8268 -1.1904 6 6 4.1318 0.4996 -1.2797 7 6 5.6502 0.3491 -1.1546 8 8 6.1210 -0.5420 -2.1693 9 6 5.5307 -1.8435 -2.1116 10 6 4.0111 -1.7152 -2.2463 11 7 2.0183 -0.6906 1.1962 12 6 2.1471 -0.0183 2.3572 13 8 1.8584 1.1616 2.4116 14 7 2.5958 -0.6538 3.4577 15 6 2.7292 0.0454 4.6655 16 6 2.4337 1.4027 4.8696 17 6 2.6881 1.6924 6.1659 18 7 3.1335 0.5664 6.7620 19 6 3.5262 0.4339 8.1671 20 6 2.7411 -0.6832 8.8049 21 1 2.0219 -1.2391 8.2218 22 6 2.9411 -0.9955 10.1329 23 7 3.8165 -0.3182 10.8431 24 14 1.9683 -2.3807 10.9233 25 1 1.0558 -2.9813 9.9175 26 1 2.9040 -3.4191 11.4246 27 1 1.1725 -1.8431 12.0559 28 7 3.1555 -0.4532 5.8018 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7199 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 3.8889 0.9534 -2.2405 35 1 3.7612 1.1327 -0.4734 36 1 5.8963 -0.0549 -0.1726 37 1 6.1244 1.3229 -1.2768 38 1 5.7733 -2.3112 -1.1574 39 1 5.9179 -2.4559 -2.9260 40 1 3.5525 -2.6988 -2.1457 41 1 3.7663 -1.2968 -3.2226 42 1 2.2490 -1.6318 1.1526 43 1 2.8265 -1.5950 3.4142 44 1 2.0643 2.0921 4.1247 45 1 2.5580 2.6540 6.6401 46 1 4.5912 0.2099 8.2271 47 1 3.3211 1.3673 8.6912 48 1 3.9568 -0.5376 11.7775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173355522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:25 Heat of formation + Delta-G solvation = -4.421112 kcal Electronic energy + Delta-G solvation = -29217.582218 eV Core-core repulsion = 25115.918043 eV Total energy + Delta-G solvation = -4101.664175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18013 -41.06756 -40.36701 -37.86463 -36.16150 -35.47135 -35.23063 -32.97625 -32.13623 -31.59499 -30.84943 -28.96303 -28.47485 -25.65105 -25.02600 -24.99060 -23.43866 -22.12785 -21.70846 -21.21874 -21.13019 -19.17528 -18.67786 -18.17748 -17.60359 -17.35025 -17.00909 -16.69220 -16.49608 -16.05154 -15.97387 -15.89297 -15.61554 -15.54833 -15.30411 -14.99721 -14.48548 -14.25264 -13.96802 -13.76729 -13.73979 -13.55363 -13.28237 -12.95768 -12.91484 -12.73022 -12.69794 -12.56196 -12.32474 -12.29433 -12.02141 -11.72119 -11.58450 -11.46072 -11.34516 -11.02969 -10.71391 -10.66775 -10.09058 -9.68048 -9.38721 -9.00376 -8.31701 -6.45898 1.11682 1.22157 1.37785 1.39151 1.52532 1.77321 2.16903 2.37305 2.49433 2.70916 2.94902 2.99572 3.26294 3.69529 3.93801 3.98770 4.01241 4.14460 4.19576 4.29748 4.31008 4.32067 4.39716 4.58801 4.63437 4.72942 4.76069 4.79483 4.80954 4.82071 4.91076 4.91972 4.98448 5.02598 5.02764 5.08586 5.21183 5.34153 5.57697 5.62364 5.79974 5.92906 5.95838 5.98544 6.03219 6.17251 6.32245 6.66113 6.85075 7.21990 7.24050 7.55367 8.75842 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.002189 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.690361 B =12789.284612 C =13182.240376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.068 0.932 4 C 0.054 3.946 5 N -0.542 5.542 6 C 0.022 3.978 7 C 0.063 3.937 8 O -0.406 6.406 9 C 0.056 3.944 10 C 0.022 3.978 11 N -0.703 5.703 12 C 0.713 3.287 13 O -0.605 6.605 14 N -0.638 5.638 15 C 0.287 3.713 16 C -0.291 4.291 17 C 0.054 3.946 18 N -0.347 5.347 19 C 0.273 3.727 20 C -0.545 4.545 21 H 0.052 0.948 22 C 0.017 3.983 23 N -0.921 5.921 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.270 1.270 28 N -0.350 5.350 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.412 0.588 43 H 0.418 0.582 44 H 0.166 0.834 45 H 0.199 0.801 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -2.410 -29.768 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.087 0.913 4 C -0.074 4.074 5 N -0.267 5.267 6 C -0.106 4.106 7 C -0.014 4.014 8 O -0.325 6.325 9 C -0.020 4.020 10 C -0.105 4.105 11 N -0.359 5.359 12 C 0.412 3.588 13 O -0.483 6.483 14 N -0.290 5.290 15 C 0.031 3.969 16 C -0.323 4.323 17 C -0.094 4.094 18 N -0.129 5.129 19 C 0.154 3.846 20 C -0.583 4.583 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.797 3.203 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.195 1.195 28 N -0.181 5.181 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.062 0.938 42 H 0.248 0.752 43 H 0.255 0.745 44 H 0.184 0.816 45 H 0.216 0.784 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.268 -2.538 -28.578 28.780 hybrid contribution -0.622 -0.290 -0.036 0.687 sum -2.889 -2.828 -28.613 28.897 Atomic orbital electron populations 1.22136 0.94215 1.03086 1.02403 1.20898 0.93992 0.96437 0.82543 0.91350 1.22468 0.86782 1.02565 0.95616 1.62161 1.05973 1.11092 1.47481 1.22711 0.95424 0.91302 1.01159 1.22666 0.93125 0.94535 0.91057 1.87962 1.66682 1.24064 1.53812 1.22848 0.92039 0.84206 1.02936 1.22805 0.96142 0.98767 0.92815 1.44771 1.70046 1.14229 1.06827 1.15795 0.77950 0.84651 0.80361 1.90821 1.57514 1.15559 1.84427 1.41424 1.68470 1.13807 1.05281 1.19096 0.99587 0.91844 0.86361 1.21670 1.17919 0.95738 0.96937 1.23145 0.98939 0.93620 0.93709 1.48801 1.49049 1.05611 1.09397 1.19318 0.95487 0.98718 0.71077 1.21426 1.23240 1.17735 0.95918 0.93005 1.25751 0.96232 0.99174 0.97140 1.70001 1.34908 1.41732 1.09375 0.85290 0.78410 0.78544 0.78098 1.19895 1.19835 1.19509 1.77240 1.29701 1.14278 0.96860 0.94274 0.89846 0.90903 0.87668 0.91703 0.93600 0.90396 0.93389 0.87824 0.92705 0.86825 0.87459 0.93784 0.75179 0.74482 0.81631 0.78373 0.96162 0.92430 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.48 71.98 0.68 -1.50 16 2 C 0.17 2.47 2.36 44.99 0.11 2.57 16 3 H 0.07 1.35 6.19 -2.39 -0.01 1.33 16 4 C 0.05 0.49 4.51 86.30 0.39 0.88 16 5 N -0.54 -6.62 4.45 -895.22 -3.98 -10.60 16 6 C 0.02 0.34 5.44 86.31 0.47 0.81 16 7 C 0.06 1.07 7.01 72.02 0.50 1.58 16 8 O -0.41 -7.47 10.83 -148.98 -1.61 -9.09 16 9 C 0.06 0.70 7.01 72.01 0.50 1.20 16 10 C 0.02 0.21 5.64 86.31 0.49 0.70 16 11 N -0.70 -12.67 4.81 -457.79 -2.20 -14.87 16 12 C 0.71 20.12 8.50 179.05 1.52 21.65 16 13 O -0.60 -21.20 13.13 -4.01 -0.05 -21.25 16 14 N -0.64 -19.74 5.45 -321.23 -1.75 -21.49 16 15 C 0.29 11.74 8.11 133.32 1.08 12.82 16 16 C -0.29 -11.75 9.61 22.11 0.21 -11.53 16 17 C 0.05 2.20 11.44 83.52 0.96 3.16 16 18 N -0.35 -16.66 3.67 -351.86 -1.29 -17.95 16 19 C 0.27 14.40 6.26 85.63 0.54 14.94 16 20 C -0.55 -31.14 9.24 25.60 0.24 -30.90 16 21 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 22 C 0.02 0.96 5.46 84.66 0.46 1.42 16 23 N -0.92 -52.65 13.29 21.45 0.28 -52.36 16 24 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 28 N -0.35 -16.60 12.42 -54.44 -0.68 -17.28 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 0.57 8.04 -2.39 -0.02 0.55 16 33 H 0.06 0.49 8.12 -2.39 -0.02 0.48 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 1.41 6.49 -2.39 -0.02 1.39 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.11 0.60 8.09 -2.39 -0.02 0.58 16 41 H 0.04 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.41 5.46 8.62 -92.70 -0.80 4.66 16 43 H 0.42 10.54 8.84 -92.70 -0.82 9.72 16 44 H 0.17 6.52 5.91 -2.91 -0.02 6.51 16 45 H 0.20 6.41 8.06 -2.91 -0.02 6.38 16 46 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 48 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -73.26 392.92 -1.74 -75.00 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.63 Total: 26.14 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 8.15 Total: 17.79 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -9.62 Total: -134.55 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -1.67 Total: -30.34 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.26 -1.74 -75.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173355522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.576 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds