Wall clock time and date at job start Tue Mar 31 2020 19:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 90.00222 * 8 6 4 10 10 H 1.48504 * 109.47636 * 210.00509 * 8 6 4 11 11 H 1.48508 * 109.47108 * 330.00152 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 13 13 C 1.34779 * 119.99741 * 275.00368 * 12 2 1 14 14 O 1.21602 * 120.00398 * 359.97438 * 13 12 2 15 15 N 1.34784 * 119.99626 * 179.97438 * 13 12 2 16 16 C 1.40846 * 119.99574 * 179.97438 * 15 13 12 17 17 C 1.40230 * 126.07737 * 0.02991 * 16 15 13 18 18 N 1.30845 * 108.34302 * 179.97438 * 17 16 15 19 19 N 1.40074 * 108.36061 * 0.02562 * 18 17 16 20 20 C 1.46504 * 126.05888 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46817 * 304.97241 * 20 19 18 22 22 N 1.46904 * 109.46683 * 180.02562 * 21 20 19 23 23 C 1.47024 * 110.99895 * 293.63168 * 22 21 20 24 24 C 1.53097 * 109.25659 * 177.61027 * 23 22 21 25 25 O 1.43013 * 109.25763 * 56.84832 * 24 23 22 26 26 C 1.43011 * 113.74242 * 301.33179 * 25 24 23 27 27 C 1.47016 * 110.99930 * 170.00329 * 22 21 20 28 28 C 1.35731 * 126.07264 * 179.71372 * 16 15 13 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00110 * 94.99637 * 12 2 1 34 34 H 0.96995 * 119.99884 * 0.02562 * 15 13 12 35 35 H 1.07998 * 125.83404 * 359.91937 * 17 16 15 36 36 H 1.09008 * 109.46966 * 64.97140 * 20 19 18 37 37 H 1.09003 * 109.47010 * 184.97050 * 20 19 18 38 38 H 1.08996 * 109.47021 * 299.99437 * 21 20 19 39 39 H 1.09007 * 109.47029 * 60.00277 * 21 20 19 40 40 H 1.09000 * 109.50406 * 297.54584 * 23 22 21 41 41 H 1.09005 * 109.50222 * 57.67461 * 23 22 21 42 42 H 1.09005 * 109.50265 * 296.91624 * 24 23 22 43 43 H 1.08997 * 109.53965 * 176.80587 * 24 23 22 44 44 H 1.09010 * 109.50557 * 298.73241 * 26 25 24 45 45 H 1.08997 * 109.54380 * 178.63019 * 26 25 24 46 46 H 1.08999 * 109.49991 * 302.32626 * 27 22 21 47 47 H 1.09000 * 109.50641 * 62.40687 * 27 22 21 48 48 H 1.08008 * 126.21515 * 0.04143 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1618 2.4117 15 7 2.5957 -0.6537 3.4578 16 6 2.7307 0.0491 4.6709 17 6 2.4362 1.4045 4.8771 18 7 2.6864 1.6945 6.1283 19 7 3.1498 0.5364 6.7655 20 6 3.5432 0.4248 8.1723 21 6 4.6137 1.4717 8.4870 22 7 5.0086 1.3594 9.8975 23 6 3.8970 1.7273 10.7867 24 6 4.3316 1.5393 12.2426 25 8 5.5038 2.3206 12.4895 26 6 6.6063 1.9884 11.6414 27 6 6.1948 2.1808 10.1795 28 6 3.1632 -0.4667 5.8495 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7090 1.1614 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 2.8265 -1.5948 3.4142 35 1 2.0668 2.0920 4.1306 36 1 2.6731 0.5926 8.8073 37 1 3.9432 -0.5717 8.3598 38 1 5.4836 1.3039 7.8521 39 1 4.2136 2.4682 8.2995 40 1 3.6266 2.7698 10.6192 41 1 3.0378 1.0897 10.5781 42 1 4.5506 0.4871 12.4241 43 1 3.5309 1.8644 12.9069 44 1 6.8915 0.9491 11.8055 45 1 7.4511 2.6380 11.8703 46 1 7.0129 1.8744 9.5276 47 1 5.9613 3.2305 10.0015 48 1 3.4661 -1.4883 6.0262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274804685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:43 Heat of formation + Delta-G solvation = 21.373194 kcal Electronic energy + Delta-G solvation = -28288.248535 eV Core-core repulsion = 24187.702885 eV Total energy + Delta-G solvation = -4100.545650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18062 -40.02778 -39.13529 -36.71632 -35.16015 -34.15578 -33.12571 -32.27093 -31.68072 -30.00865 -29.21303 -27.93803 -26.23124 -25.23380 -24.54891 -23.06435 -22.17381 -21.06506 -20.88843 -20.28751 -19.64920 -17.90265 -17.45936 -16.98699 -16.61249 -16.14999 -15.94798 -15.58064 -15.48102 -15.44747 -14.90900 -14.82687 -14.55223 -14.21069 -13.95775 -13.81549 -13.48176 -13.17482 -12.85139 -12.66949 -12.56662 -12.37517 -12.05102 -11.87164 -11.77476 -11.48763 -11.10963 -11.07003 -10.98377 -10.77041 -10.63335 -10.39950 -10.26333 -10.22259 -10.16837 -9.35345 -9.28133 -9.03049 -8.95926 -8.55988 -8.02563 -7.36423 -6.11864 -4.20876 1.88016 2.32157 2.97198 3.24286 3.24785 3.31001 3.32751 3.38756 3.43622 4.03527 4.26569 4.33068 4.38163 4.43329 4.46302 4.66347 4.77650 4.82442 4.82761 4.90779 5.03461 5.03981 5.13649 5.16851 5.20878 5.29213 5.34708 5.38209 5.44689 5.49879 5.75959 5.82100 6.33069 6.36126 6.51109 6.64637 6.81693 6.98034 7.02064 7.14519 7.20323 7.27702 7.50421 7.63101 7.78778 7.88418 8.04803 8.17008 8.75408 8.88592 9.29019 9.48183 10.94164 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037849 B = 0.001603 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.604621 B =17466.790972 C =17653.883446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.720 5.720 13 C 0.698 3.302 14 O -0.588 6.588 15 N -0.671 5.671 16 C 0.044 3.956 17 C 0.056 3.944 18 N -0.291 5.291 19 N -0.381 5.381 20 C 0.151 3.849 21 C 0.043 3.957 22 N -0.536 5.536 23 C 0.010 3.990 24 C 0.064 3.936 25 O -0.386 6.386 26 C 0.064 3.936 27 C 0.018 3.982 28 C -0.004 4.004 29 H 0.025 0.975 30 H 0.016 0.984 31 H 0.090 0.910 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.401 0.599 35 H 0.209 0.791 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.046 0.954 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -3.647 27.607 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.371 5.371 13 C 0.398 3.602 14 O -0.466 6.466 15 N -0.319 5.319 16 C -0.062 4.062 17 C -0.132 4.132 18 N -0.113 5.113 19 N -0.168 5.168 20 C 0.028 3.972 21 C -0.085 4.085 22 N -0.261 5.261 23 C -0.118 4.118 24 C -0.013 4.013 25 O -0.305 6.305 26 C -0.013 4.013 27 C -0.110 4.110 28 C -0.151 4.151 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.235 0.765 35 H 0.226 0.774 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.388 -1.892 28.626 29.890 hybrid contribution 0.281 -1.550 -2.027 2.567 sum 8.670 -3.442 26.599 28.188 Atomic orbital electron populations 1.22106 0.98560 0.99065 1.00950 1.18678 0.90831 0.93793 0.78838 0.93198 1.21206 1.32470 1.13239 0.90270 0.92101 1.24879 0.94862 0.94960 0.99017 1.69905 1.35856 1.22346 1.23886 0.86441 0.79115 0.79245 0.82218 1.20580 1.21077 1.19909 1.45803 1.68862 1.13273 1.09160 1.16050 0.78652 0.85304 0.80208 1.90741 1.57379 1.14466 1.84006 1.42123 1.70056 1.12818 1.06935 1.17555 1.09504 0.92957 0.86174 1.24657 0.99642 0.95377 0.93489 1.77328 1.19624 1.06623 1.07699 1.48124 1.53181 1.06870 1.08655 1.21434 0.97818 1.00845 0.77053 1.22362 0.98758 0.98904 0.88514 1.62165 1.05524 1.54741 1.03714 1.22921 0.94427 1.00610 0.93826 1.22674 0.87989 0.96020 0.94609 1.88000 1.21875 1.61508 1.59087 1.22670 0.89253 1.01282 0.88060 1.22794 0.93707 0.96263 0.98249 1.21691 1.09232 0.95255 0.88882 0.95568 0.96510 0.89149 0.92561 0.78222 0.76509 0.77438 0.90251 0.88101 0.89888 0.92714 0.93400 0.89262 0.92136 0.88304 0.92123 0.88295 0.89349 0.93548 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.28 7.07 2.56 -69.08 -0.18 6.89 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.72 -14.71 5.07 -59.81 -0.30 -15.01 16 13 C 0.70 13.97 8.50 -86.91 -0.74 13.23 16 14 O -0.59 -13.88 13.16 5.28 0.07 -13.81 16 15 N -0.67 -10.19 5.48 -14.39 -0.08 -10.27 16 16 C 0.04 0.67 6.90 -83.86 -0.58 0.09 16 17 C 0.06 0.96 10.84 -17.22 -0.19 0.77 16 18 N -0.29 -4.51 12.41 30.70 0.38 -4.13 16 19 N -0.38 -4.57 3.70 -61.01 -0.23 -4.79 16 20 C 0.15 1.23 6.45 -4.04 -0.03 1.21 16 21 C 0.04 0.36 5.14 -3.82 -0.02 0.34 16 22 N -0.54 -3.86 4.73 -234.30 -1.11 -4.96 16 23 C 0.01 0.07 5.44 -3.71 -0.02 0.05 16 24 C 0.06 0.39 7.01 37.21 0.26 0.65 16 25 O -0.39 -3.17 10.83 -35.23 -0.38 -3.55 16 26 C 0.06 0.40 7.01 37.20 0.26 0.66 16 27 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 28 C 0.00 -0.05 11.52 -16.67 -0.19 -0.24 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.67 8.55 -40.82 -0.35 6.32 16 34 H 0.40 4.56 8.84 -40.82 -0.36 4.19 16 35 H 0.21 4.00 5.91 -52.49 -0.31 3.69 16 36 H 0.08 0.60 6.52 -51.92 -0.34 0.27 16 37 H 0.10 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 39 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.49 6.38 -51.93 -0.33 0.16 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -32.87 389.28 -9.09 -41.96 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.42 Total: 9.49 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.49 Total: 7.84 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.71 Total: -63.23 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.31 Total: -17.36 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.87 -9.09 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274804685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.330 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds