Wall clock time and date at job start Tue Mar 31 2020 19:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 90.00222 * 8 6 4 10 10 H 1.48504 * 109.47636 * 210.00509 * 8 6 4 11 11 H 1.48508 * 109.47108 * 330.00152 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 13 13 C 1.34779 * 119.99741 * 275.00368 * 12 2 1 14 14 O 1.21602 * 120.00398 * 359.97438 * 13 12 2 15 15 N 1.34784 * 119.99626 * 179.97438 * 13 12 2 16 16 C 1.40846 * 119.99574 * 179.97438 * 15 13 12 17 17 C 1.40230 * 126.07737 * 0.02991 * 16 15 13 18 18 N 1.30845 * 108.34302 * 179.97438 * 17 16 15 19 19 N 1.40074 * 108.36061 * 0.02562 * 18 17 16 20 20 C 1.46504 * 126.05888 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46817 * 304.97241 * 20 19 18 22 22 N 1.46904 * 109.46683 * 180.02562 * 21 20 19 23 23 C 1.47024 * 110.99895 * 293.63168 * 22 21 20 24 24 C 1.53097 * 109.25659 * 177.61027 * 23 22 21 25 25 O 1.43013 * 109.25763 * 56.84832 * 24 23 22 26 26 C 1.43011 * 113.74242 * 301.33179 * 25 24 23 27 27 C 1.47016 * 110.99930 * 170.00329 * 22 21 20 28 28 C 1.35731 * 126.07264 * 179.71372 * 16 15 13 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00110 * 94.99637 * 12 2 1 34 34 H 0.96995 * 119.99884 * 0.02562 * 15 13 12 35 35 H 1.07998 * 125.83404 * 359.91937 * 17 16 15 36 36 H 1.09008 * 109.46966 * 64.97140 * 20 19 18 37 37 H 1.09003 * 109.47010 * 184.97050 * 20 19 18 38 38 H 1.08996 * 109.47021 * 299.99437 * 21 20 19 39 39 H 1.09007 * 109.47029 * 60.00277 * 21 20 19 40 40 H 1.09000 * 109.50406 * 297.54584 * 23 22 21 41 41 H 1.09005 * 109.50222 * 57.67461 * 23 22 21 42 42 H 1.09005 * 109.50265 * 296.91624 * 24 23 22 43 43 H 1.08997 * 109.53965 * 176.80587 * 24 23 22 44 44 H 1.09010 * 109.50557 * 298.73241 * 26 25 24 45 45 H 1.08997 * 109.54380 * 178.63019 * 26 25 24 46 46 H 1.08999 * 109.49991 * 302.32626 * 27 22 21 47 47 H 1.09000 * 109.50641 * 62.40687 * 27 22 21 48 48 H 1.08008 * 126.21515 * 0.04143 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1618 2.4117 15 7 2.5957 -0.6537 3.4578 16 6 2.7307 0.0491 4.6709 17 6 2.4362 1.4045 4.8771 18 7 2.6864 1.6945 6.1283 19 7 3.1498 0.5364 6.7655 20 6 3.5432 0.4248 8.1723 21 6 4.6137 1.4717 8.4870 22 7 5.0086 1.3594 9.8975 23 6 3.8970 1.7273 10.7867 24 6 4.3316 1.5393 12.2426 25 8 5.5038 2.3206 12.4895 26 6 6.6063 1.9884 11.6414 27 6 6.1948 2.1808 10.1795 28 6 3.1632 -0.4667 5.8495 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7090 1.1614 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 2.8265 -1.5948 3.4142 35 1 2.0668 2.0920 4.1306 36 1 2.6731 0.5926 8.8073 37 1 3.9432 -0.5717 8.3598 38 1 5.4836 1.3039 7.8521 39 1 4.2136 2.4682 8.2995 40 1 3.6266 2.7698 10.6192 41 1 3.0378 1.0897 10.5781 42 1 4.5506 0.4871 12.4241 43 1 3.5309 1.8644 12.9069 44 1 6.8915 0.9491 11.8055 45 1 7.4511 2.6380 11.8703 46 1 7.0129 1.8744 9.5276 47 1 5.9613 3.2305 10.0015 48 1 3.4661 -1.4883 6.0262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274804685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:42 Heat of formation + Delta-G solvation = -4.605631 kcal Electronic energy + Delta-G solvation = -28289.375062 eV Core-core repulsion = 24187.702885 eV Total energy + Delta-G solvation = -4101.672177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.30300 -40.75384 -40.48793 -37.40056 -36.84891 -35.59735 -34.40335 -33.83490 -32.18838 -31.17530 -30.63728 -29.10577 -27.30867 -26.99996 -25.06158 -23.91470 -23.73058 -22.12377 -21.85380 -21.42823 -21.11007 -19.42122 -18.51419 -17.98950 -17.56455 -17.15699 -17.07792 -16.73831 -16.39566 -16.24549 -16.03397 -15.96639 -15.71537 -15.42190 -15.20496 -14.87123 -14.56715 -14.33755 -14.28178 -13.76721 -13.72654 -13.47765 -13.15351 -12.97210 -12.86693 -12.68194 -12.67525 -12.37170 -12.25935 -12.14117 -12.10290 -11.73062 -11.69126 -11.47963 -11.05737 -11.03682 -10.73870 -10.57178 -10.31360 -9.79152 -9.58497 -8.56353 -8.14225 -6.31218 0.84284 1.38234 1.47736 1.48630 1.58890 1.67834 1.97817 2.44784 2.53570 2.68343 2.94873 3.16483 3.55047 3.64015 3.73438 3.90004 3.93175 4.00946 4.16277 4.17347 4.25296 4.30423 4.33751 4.49582 4.54446 4.63226 4.69218 4.76869 4.79838 4.80688 4.83579 4.89434 4.97974 4.99874 5.14144 5.24717 5.44808 5.63709 5.70708 5.73181 5.78919 5.87832 5.92001 6.13201 6.14987 6.17052 6.34173 6.70213 6.77275 7.34958 7.38948 7.79409 8.92240 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037849 B = 0.001603 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.604621 B =17466.790972 C =17653.883446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.001 1.001 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.715 5.715 13 C 0.694 3.306 14 O -0.631 6.631 15 N -0.647 5.647 16 C 0.004 3.996 17 C 0.027 3.973 18 N -0.314 5.314 19 N -0.369 5.369 20 C 0.145 3.855 21 C 0.051 3.949 22 N -0.529 5.529 23 C 0.009 3.991 24 C 0.063 3.937 25 O -0.409 6.409 26 C 0.064 3.936 27 C 0.016 3.984 28 C 0.040 3.960 29 H 0.040 0.960 30 H 0.010 0.990 31 H 0.066 0.934 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.423 0.577 35 H 0.174 0.826 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.031 0.969 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 -7.211 29.375 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.017 0.983 4 C -0.582 4.582 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.367 5.367 13 C 0.394 3.606 14 O -0.512 6.512 15 N -0.297 5.297 16 C -0.101 4.101 17 C -0.160 4.160 18 N -0.137 5.137 19 N -0.155 5.155 20 C 0.025 3.975 21 C -0.078 4.078 22 N -0.254 5.254 23 C -0.119 4.119 24 C -0.014 4.014 25 O -0.328 6.328 26 C -0.012 4.012 27 C -0.112 4.112 28 C -0.108 4.108 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.261 0.739 35 H 0.191 0.809 36 H 0.108 0.892 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.129 0.871 46 H 0.117 0.883 47 H 0.049 0.951 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.909 -5.504 30.470 32.510 hybrid contribution -0.131 -0.402 -2.352 2.390 sum 9.778 -5.906 28.118 30.350 Atomic orbital electron populations 1.21921 0.98489 0.99411 0.99462 1.18238 0.90835 0.91721 0.80752 0.98291 1.21535 1.32514 1.13563 0.90610 0.90658 1.25804 0.94960 0.95595 1.02325 1.70064 1.37083 1.23913 1.24552 0.85321 0.78961 0.77957 0.77909 1.19643 1.21455 1.18785 1.45346 1.69233 1.13923 1.08241 1.16175 0.78615 0.84816 0.81016 1.90743 1.59030 1.16613 1.84815 1.41632 1.68892 1.13557 1.05632 1.17739 1.12656 0.92510 0.87231 1.24259 1.01452 0.96429 0.93825 1.77280 1.20715 1.08475 1.07267 1.48550 1.51015 1.05990 1.09959 1.21822 0.98254 1.02597 0.74848 1.22213 0.98563 0.97627 0.89371 1.62229 1.05762 1.54513 1.02932 1.22982 0.94766 0.99896 0.94220 1.22802 0.87814 0.96442 0.94320 1.87971 1.22823 1.62340 1.59715 1.22779 0.89127 1.02139 0.87191 1.22856 0.93881 0.95360 0.99107 1.22421 1.04921 0.96743 0.86746 0.94072 0.97044 0.91536 0.92611 0.76109 0.73928 0.80895 0.89215 0.84409 0.90171 0.95452 0.95191 0.87777 0.91087 0.87108 0.91220 0.87073 0.88284 0.95110 0.75655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.29 14.96 2.56 44.25 0.11 15.07 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.54 -28.46 8.73 25.60 0.22 -28.24 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.43 16 8 Si 0.97 41.67 29.54 68.60 2.03 43.69 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 12 N -0.71 -29.29 5.07 -461.38 -2.34 -31.63 16 13 C 0.69 28.27 8.50 179.05 1.52 29.79 16 14 O -0.63 -31.60 13.16 -4.04 -0.05 -31.65 16 15 N -0.65 -18.85 5.48 -317.69 -1.74 -20.60 16 16 C 0.00 0.11 6.90 37.59 0.26 0.37 16 17 C 0.03 0.95 10.84 85.32 0.92 1.87 16 18 N -0.31 -9.81 12.41 -56.78 -0.70 -10.51 16 19 N -0.37 -7.89 3.70 -346.95 -1.29 -9.18 16 20 C 0.15 1.87 6.45 86.38 0.56 2.43 16 21 C 0.05 0.77 5.14 86.30 0.44 1.21 16 22 N -0.53 -6.58 4.73 -895.17 -4.23 -10.81 16 23 C 0.01 0.11 5.44 86.31 0.47 0.58 16 24 C 0.06 0.65 7.01 72.01 0.50 1.16 16 25 O -0.41 -6.19 10.83 -148.98 -1.61 -7.80 16 26 C 0.06 0.69 7.01 72.01 0.50 1.19 16 27 C 0.02 0.20 5.64 86.31 0.49 0.68 16 28 C 0.04 0.77 11.52 83.49 0.96 1.74 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.40 13.40 8.55 -92.71 -0.79 12.61 16 34 H 0.42 8.35 8.84 -92.71 -0.82 7.54 16 35 H 0.17 7.37 5.91 -2.91 -0.02 7.36 16 36 H 0.09 1.06 6.52 -2.38 -0.02 1.04 16 37 H 0.14 0.88 8.07 -2.39 -0.02 0.87 16 38 H 0.08 1.26 8.04 -2.39 -0.02 1.24 16 39 H 0.03 0.56 8.12 -2.38 -0.02 0.55 16 40 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.87 6.38 -2.38 -0.02 0.86 16 42 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 45 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 47 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.23 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -76.18 389.28 -2.23 -78.42 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.62 Total: 29.65 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 8.09 Total: 22.84 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -10.06 Total: -135.15 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.67 Total: -39.45 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -76.18 -2.23 -78.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274804685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.810 kcal (2) G-P(sol) polarization free energy of solvation -76.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds