Wall clock time and date at job start Tue Mar 31 2020 19:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21597 * 120.00003 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99711 * 180.02562 * 13 12 2 16 16 C 1.40852 * 119.99773 * 180.02562 * 15 13 12 17 17 C 1.40227 * 126.07533 * 0.02562 * 16 15 13 18 18 N 1.30838 * 108.34421 * 179.97438 * 17 16 15 19 19 N 1.40071 * 108.36254 * 0.02562 * 18 17 16 20 20 C 1.46501 * 126.06192 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46861 * 304.97550 * 20 19 18 22 22 N 1.46898 * 109.47074 * 180.02562 * 21 20 19 23 23 C 1.47019 * 110.99942 * 293.63348 * 22 21 20 24 24 C 1.53103 * 109.25621 * 177.60476 * 23 22 21 25 25 O 1.43014 * 109.25471 * 56.85151 * 24 23 22 26 26 C 1.43014 * 113.74292 * 301.32524 * 25 24 23 27 27 C 1.47012 * 111.00226 * 169.99829 * 22 21 20 28 28 C 1.35725 * 126.07539 * 179.70952 * 16 15 13 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 34 34 H 0.97001 * 120.00313 * 359.97438 * 15 13 12 35 35 H 1.08005 * 125.83203 * 359.93129 * 17 16 15 36 36 H 1.08993 * 109.47222 * 64.97325 * 20 19 18 37 37 H 1.09006 * 109.47095 * 184.97662 * 20 19 18 38 38 H 1.09003 * 109.47072 * 299.99832 * 21 20 19 39 39 H 1.09002 * 109.47481 * 59.99760 * 21 20 19 40 40 H 1.08991 * 109.50614 * 297.54186 * 23 22 21 41 41 H 1.09002 * 109.50295 * 57.67413 * 23 22 21 42 42 H 1.08992 * 109.50941 * 296.91348 * 24 23 22 43 43 H 1.08997 * 109.54004 * 176.80257 * 24 23 22 44 44 H 1.09003 * 109.50152 * 298.74004 * 26 25 24 45 45 H 1.09000 * 109.54440 * 178.62929 * 26 25 24 46 46 H 1.08995 * 109.50919 * 302.32517 * 27 22 21 47 47 H 1.09003 * 109.50890 * 62.41320 * 27 22 21 48 48 H 1.08004 * 126.21539 * 0.03920 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8582 1.1619 -2.4115 15 7 2.5958 -0.6535 -3.4577 16 6 2.7308 0.0494 -4.6709 17 6 2.4373 1.4051 -4.8768 18 7 2.6883 1.6954 -6.1276 19 7 3.1500 0.5369 -6.7654 20 6 3.5445 0.4257 -8.1719 21 6 2.3963 0.9039 -9.0629 22 7 2.7916 0.7919 -10.4732 23 6 3.8831 1.7244 -10.7901 24 6 4.3032 1.5327 -12.2499 25 8 3.1663 1.7222 -13.0965 26 6 2.0843 0.8300 -12.8160 27 6 1.6419 1.0144 -11.3620 28 6 3.1737 -0.4636 -5.8468 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 2.2490 -1.6317 -1.1527 34 1 2.8265 -1.5946 -3.4143 35 1 2.0667 2.0922 -4.1304 36 1 4.4251 1.0422 -8.3520 37 1 3.7753 -0.6141 -8.4034 38 1 1.5156 0.2874 -8.8827 39 1 2.1654 1.9437 -8.8314 40 1 3.5415 2.7486 -10.6411 41 1 4.7331 1.5249 -10.1376 42 1 4.6949 0.5249 -12.3866 43 1 5.0731 2.2604 -12.5062 44 1 2.4116 -0.1984 -12.9692 45 1 1.2491 1.0491 -13.4812 46 1 0.8559 0.2968 -11.1270 47 1 1.2639 2.0271 -11.2216 48 1 3.4852 -1.4829 -6.0213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274804687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:45 Heat of formation + Delta-G solvation = 21.452764 kcal Electronic energy + Delta-G solvation = -28288.256314 eV Core-core repulsion = 24187.714114 eV Total energy + Delta-G solvation = -4100.542200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18166 -40.02980 -39.13595 -36.71865 -35.15942 -34.15582 -33.12666 -32.26969 -31.68239 -30.00956 -29.21332 -27.93866 -26.23259 -25.23120 -24.55124 -23.06586 -22.17333 -21.06559 -20.89037 -20.28663 -19.64896 -17.90269 -17.46066 -16.98593 -16.61403 -16.16134 -15.93829 -15.58353 -15.47009 -15.43896 -14.95768 -14.81996 -14.51008 -14.27303 -13.85331 -13.83394 -13.55677 -13.14236 -12.86408 -12.67584 -12.55212 -12.37378 -12.05261 -11.87540 -11.77520 -11.48350 -11.11477 -11.05905 -10.98389 -10.77933 -10.63884 -10.39726 -10.26722 -10.21641 -10.16964 -9.35300 -9.28148 -9.04081 -8.96131 -8.55202 -8.02565 -7.36454 -6.11554 -4.20640 1.88060 2.32076 2.97228 3.24310 3.26064 3.30984 3.31845 3.38505 3.43467 4.03593 4.26412 4.33169 4.38130 4.43121 4.46083 4.66191 4.77538 4.82447 4.82558 4.90737 5.03420 5.03905 5.13441 5.16759 5.21082 5.28984 5.34589 5.38153 5.44421 5.49719 5.75954 5.82095 6.32889 6.35918 6.51072 6.64458 6.81672 6.98052 7.02050 7.14507 7.20308 7.27748 7.50485 7.62998 7.78834 7.88491 8.04873 8.17155 8.75347 8.88663 9.29076 9.48316 10.94438 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.045251 B = 0.001586 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.616840 B =17653.118620 C =17801.170092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.720 5.720 13 C 0.698 3.302 14 O -0.588 6.588 15 N -0.671 5.671 16 C 0.044 3.956 17 C 0.056 3.944 18 N -0.291 5.291 19 N -0.381 5.381 20 C 0.151 3.849 21 C 0.043 3.957 22 N -0.536 5.536 23 C 0.010 3.990 24 C 0.064 3.936 25 O -0.386 6.386 26 C 0.064 3.936 27 C 0.018 3.982 28 C -0.004 4.004 29 H 0.016 0.984 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.401 0.599 35 H 0.209 0.791 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.046 0.954 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -4.506 -28.474 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.371 5.371 13 C 0.398 3.602 14 O -0.466 6.466 15 N -0.319 5.319 16 C -0.062 4.062 17 C -0.132 4.132 18 N -0.113 5.113 19 N -0.168 5.168 20 C 0.028 3.972 21 C -0.085 4.085 22 N -0.262 5.262 23 C -0.118 4.118 24 C -0.013 4.013 25 O -0.305 6.305 26 C -0.013 4.013 27 C -0.110 4.110 28 C -0.151 4.151 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.235 0.765 35 H 0.226 0.774 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.020 -2.743 -29.483 30.032 hybrid contribution 0.237 -1.570 2.005 2.558 sum 5.257 -4.313 -27.477 28.306 Atomic orbital electron populations 1.22105 0.98565 0.99053 1.00942 1.18670 0.90825 0.93787 0.78824 0.93205 1.21171 1.32545 1.13271 0.90282 0.92154 1.24878 0.94836 0.94972 0.99003 1.69896 1.35748 1.22356 1.23993 0.86496 0.79133 0.79542 0.81822 1.21137 1.20206 1.20216 1.45805 1.68863 1.13274 1.09161 1.16046 0.78662 0.85300 0.80204 1.90740 1.57382 1.14466 1.84002 1.42125 1.70058 1.12803 1.06948 1.17555 1.09287 0.93048 0.86301 1.24657 0.99650 0.95344 0.93515 1.77324 1.19745 1.06523 1.07680 1.48123 1.53563 1.06878 1.08268 1.21432 0.97060 1.03338 0.75327 1.22360 0.97952 1.01747 0.86467 1.62157 1.08926 1.51870 1.03198 1.22919 0.95590 0.95153 0.98121 1.22674 0.88375 1.02069 0.88174 1.88000 1.25498 1.59099 1.57874 1.22671 0.90071 0.94116 0.94408 1.22793 0.93264 1.01310 0.93641 1.21689 1.09036 0.95320 0.89012 0.96528 0.95575 0.89146 0.92504 0.78223 0.76509 0.77435 0.90244 0.88099 0.89903 0.92718 0.93397 0.89254 0.92132 0.88298 0.92124 0.88297 0.89358 0.93552 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.28 7.08 2.56 -69.09 -0.18 6.90 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.72 -14.71 5.07 -59.81 -0.30 -15.02 16 13 C 0.70 13.97 8.50 -86.92 -0.74 13.23 16 14 O -0.59 -13.88 13.16 5.28 0.07 -13.81 16 15 N -0.67 -10.19 5.48 -14.39 -0.08 -10.27 16 16 C 0.04 0.67 6.90 -83.86 -0.58 0.09 16 17 C 0.06 0.96 10.84 -17.23 -0.19 0.77 16 18 N -0.29 -4.51 12.41 30.70 0.38 -4.13 16 19 N -0.38 -4.57 3.70 -61.02 -0.23 -4.79 16 20 C 0.15 1.23 6.45 -4.04 -0.03 1.21 16 21 C 0.04 0.36 5.14 -3.83 -0.02 0.34 16 22 N -0.54 -3.84 4.73 -234.31 -1.11 -4.95 16 23 C 0.01 0.07 5.44 -3.71 -0.02 0.05 16 24 C 0.06 0.39 7.01 37.21 0.26 0.65 16 25 O -0.39 -3.17 10.83 -35.23 -0.38 -3.55 16 26 C 0.06 0.39 7.01 37.21 0.26 0.66 16 27 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 28 C 0.00 -0.05 11.52 -16.67 -0.19 -0.24 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.39 6.67 8.55 -40.82 -0.35 6.32 16 34 H 0.40 4.56 8.84 -40.82 -0.36 4.19 16 35 H 0.21 4.00 5.91 -52.48 -0.31 3.69 16 36 H 0.08 0.61 6.52 -51.93 -0.34 0.27 16 37 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 39 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.49 6.38 -51.93 -0.33 0.16 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -32.85 389.28 -9.09 -41.94 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.42 Total: 9.50 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.49 Total: 7.84 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.71 Total: -63.23 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.31 Total: -17.36 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.85 -9.09 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274804687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.388 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds