Wall clock time and date at job start Tue Mar 31 2020 19:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21597 * 120.00003 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99711 * 180.02562 * 13 12 2 16 16 C 1.40852 * 119.99773 * 180.02562 * 15 13 12 17 17 C 1.40227 * 126.07533 * 0.02562 * 16 15 13 18 18 N 1.30838 * 108.34421 * 179.97438 * 17 16 15 19 19 N 1.40071 * 108.36254 * 0.02562 * 18 17 16 20 20 C 1.46501 * 126.06192 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46861 * 304.97550 * 20 19 18 22 22 N 1.46898 * 109.47074 * 180.02562 * 21 20 19 23 23 C 1.47019 * 110.99942 * 293.63348 * 22 21 20 24 24 C 1.53103 * 109.25621 * 177.60476 * 23 22 21 25 25 O 1.43014 * 109.25471 * 56.85151 * 24 23 22 26 26 C 1.43014 * 113.74292 * 301.32524 * 25 24 23 27 27 C 1.47012 * 111.00226 * 169.99829 * 22 21 20 28 28 C 1.35725 * 126.07539 * 179.70952 * 16 15 13 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 34 34 H 0.97001 * 120.00313 * 359.97438 * 15 13 12 35 35 H 1.08005 * 125.83203 * 359.93129 * 17 16 15 36 36 H 1.08993 * 109.47222 * 64.97325 * 20 19 18 37 37 H 1.09006 * 109.47095 * 184.97662 * 20 19 18 38 38 H 1.09003 * 109.47072 * 299.99832 * 21 20 19 39 39 H 1.09002 * 109.47481 * 59.99760 * 21 20 19 40 40 H 1.08991 * 109.50614 * 297.54186 * 23 22 21 41 41 H 1.09002 * 109.50295 * 57.67413 * 23 22 21 42 42 H 1.08992 * 109.50941 * 296.91348 * 24 23 22 43 43 H 1.08997 * 109.54004 * 176.80257 * 24 23 22 44 44 H 1.09003 * 109.50152 * 298.74004 * 26 25 24 45 45 H 1.09000 * 109.54440 * 178.62929 * 26 25 24 46 46 H 1.08995 * 109.50919 * 302.32517 * 27 22 21 47 47 H 1.09003 * 109.50890 * 62.41320 * 27 22 21 48 48 H 1.08004 * 126.21539 * 0.03920 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8582 1.1619 -2.4115 15 7 2.5958 -0.6535 -3.4577 16 6 2.7308 0.0494 -4.6709 17 6 2.4373 1.4051 -4.8768 18 7 2.6883 1.6954 -6.1276 19 7 3.1500 0.5369 -6.7654 20 6 3.5445 0.4257 -8.1719 21 6 2.3963 0.9039 -9.0629 22 7 2.7916 0.7919 -10.4732 23 6 3.8831 1.7244 -10.7901 24 6 4.3032 1.5327 -12.2499 25 8 3.1663 1.7222 -13.0965 26 6 2.0843 0.8300 -12.8160 27 6 1.6419 1.0144 -11.3620 28 6 3.1737 -0.4636 -5.8468 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 2.2490 -1.6317 -1.1527 34 1 2.8265 -1.5946 -3.4143 35 1 2.0667 2.0922 -4.1304 36 1 4.4251 1.0422 -8.3520 37 1 3.7753 -0.6141 -8.4034 38 1 1.5156 0.2874 -8.8827 39 1 2.1654 1.9437 -8.8314 40 1 3.5415 2.7486 -10.6411 41 1 4.7331 1.5249 -10.1376 42 1 4.6949 0.5249 -12.3866 43 1 5.0731 2.2604 -12.5062 44 1 2.4116 -0.1984 -12.9692 45 1 1.2491 1.0491 -13.4812 46 1 0.8559 0.2968 -11.1270 47 1 1.2639 2.0271 -11.2216 48 1 3.4852 -1.4829 -6.0213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274804687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:44 Heat of formation + Delta-G solvation = -4.507069 kcal Electronic energy + Delta-G solvation = -28289.382016 eV Core-core repulsion = 24187.714114 eV Total energy + Delta-G solvation = -4101.667903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30418 -40.75454 -40.48828 -37.40091 -36.84806 -35.59755 -34.40235 -33.83503 -32.18824 -31.17552 -30.63713 -29.10611 -27.30562 -27.00014 -25.06214 -23.91445 -23.73000 -22.12339 -21.85360 -21.42824 -21.11022 -19.42061 -18.51568 -17.98309 -17.56223 -17.15810 -17.09827 -16.68890 -16.40919 -16.25779 -16.06771 -15.97569 -15.63498 -15.50931 -15.10895 -14.90988 -14.60574 -14.35012 -14.23451 -13.79375 -13.69578 -13.48130 -13.15518 -12.96237 -12.85909 -12.70108 -12.67563 -12.37129 -12.24132 -12.14255 -12.11150 -11.72934 -11.69200 -11.48028 -11.07123 -11.03628 -10.73866 -10.56052 -10.31395 -9.79169 -9.58460 -8.56403 -8.13871 -6.30964 0.84298 1.38195 1.48125 1.50151 1.57808 1.67846 1.97768 2.45189 2.53540 2.68396 2.94880 3.16743 3.55055 3.64006 3.73446 3.89992 3.93174 4.00937 4.16301 4.17349 4.25293 4.30458 4.33817 4.49599 4.54454 4.63225 4.69227 4.76873 4.79799 4.80719 4.83585 4.89436 4.97973 4.99891 5.14192 5.24682 5.44819 5.63656 5.70778 5.73201 5.78950 5.87833 5.92060 6.13239 6.15011 6.17043 6.34232 6.70213 6.77222 7.35016 7.39091 7.79441 8.92377 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.045251 B = 0.001586 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.616840 B =17653.118620 C =17801.170092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.288 1.288 10 H -0.263 1.263 11 H -0.271 1.271 12 N -0.715 5.715 13 C 0.694 3.306 14 O -0.631 6.631 15 N -0.647 5.647 16 C 0.004 3.996 17 C 0.027 3.973 18 N -0.314 5.314 19 N -0.369 5.369 20 C 0.145 3.855 21 C 0.051 3.949 22 N -0.529 5.529 23 C 0.009 3.991 24 C 0.063 3.937 25 O -0.410 6.410 26 C 0.064 3.936 27 C 0.016 3.984 28 C 0.040 3.960 29 H 0.010 0.990 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.423 0.577 35 H 0.174 0.826 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.031 0.969 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -8.027 -30.178 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.214 1.214 10 H -0.188 1.188 11 H -0.196 1.196 12 N -0.367 5.367 13 C 0.394 3.606 14 O -0.512 6.512 15 N -0.297 5.297 16 C -0.101 4.101 17 C -0.160 4.160 18 N -0.137 5.137 19 N -0.155 5.155 20 C 0.025 3.975 21 C -0.078 4.078 22 N -0.255 5.255 23 C -0.119 4.119 24 C -0.014 4.014 25 O -0.329 6.329 26 C -0.012 4.012 27 C -0.112 4.112 28 C -0.108 4.108 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.261 0.739 35 H 0.191 0.809 36 H 0.107 0.893 37 H 0.156 0.844 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.129 0.871 46 H 0.117 0.883 47 H 0.049 0.951 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.751 -6.312 -31.263 32.600 hybrid contribution -0.256 -0.439 2.306 2.361 sum 6.496 -6.752 -28.957 30.435 Atomic orbital electron populations 1.21919 0.98492 0.99397 0.99455 1.18231 0.90831 0.91713 0.80745 0.98307 1.21509 1.32593 1.13623 0.90619 0.90653 1.25805 0.94925 0.95607 1.02318 1.70059 1.36993 1.23925 1.24611 0.85374 0.78573 0.78694 0.77518 1.21390 1.18780 1.19645 1.45347 1.69233 1.13925 1.08241 1.16171 0.78628 0.84811 0.81012 1.90742 1.59033 1.16614 1.84812 1.41634 1.68897 1.13543 1.05640 1.17739 1.12434 0.92608 0.87356 1.24259 1.01462 0.96405 0.93840 1.77277 1.20859 1.08377 1.07222 1.48548 1.51380 1.05980 1.09608 1.21819 0.96998 1.05806 0.72910 1.22210 0.98086 1.00058 0.87396 1.62221 1.09125 1.51682 1.02421 1.22979 0.95777 0.94091 0.99017 1.22800 0.88115 1.03088 0.87372 1.87972 1.26405 1.59922 1.58558 1.22783 0.90104 0.94284 0.94075 1.22856 0.93459 1.00763 0.94114 1.22419 1.04761 0.96760 0.86888 0.97067 0.94083 0.91526 0.92608 0.76109 0.73926 0.80894 0.89261 0.84405 0.90124 0.95456 0.95190 0.87805 0.91088 0.87125 0.91222 0.87058 0.88254 0.95108 0.75656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 2 C 0.29 14.98 2.56 44.24 0.11 15.09 16 3 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 4 C -0.55 -28.53 8.73 25.60 0.22 -28.30 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 8 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 9 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 12 N -0.71 -29.29 5.07 -461.41 -2.34 -31.63 16 13 C 0.69 28.28 8.50 179.05 1.52 29.80 16 14 O -0.63 -31.61 13.16 -4.02 -0.05 -31.66 16 15 N -0.65 -18.86 5.48 -317.71 -1.74 -20.60 16 16 C 0.00 0.11 6.90 37.59 0.26 0.37 16 17 C 0.03 0.95 10.84 85.32 0.92 1.87 16 18 N -0.31 -9.81 12.41 -56.78 -0.70 -10.51 16 19 N -0.37 -7.90 3.70 -346.98 -1.29 -9.18 16 20 C 0.15 1.87 6.45 86.38 0.56 2.43 16 21 C 0.05 0.77 5.14 86.30 0.44 1.21 16 22 N -0.53 -6.55 4.73 -895.21 -4.23 -10.78 16 23 C 0.01 0.11 5.44 86.31 0.47 0.58 16 24 C 0.06 0.66 7.01 72.02 0.50 1.16 16 25 O -0.41 -6.18 10.83 -148.98 -1.61 -7.79 16 26 C 0.06 0.68 7.01 72.02 0.50 1.19 16 27 C 0.02 0.19 5.64 86.31 0.49 0.68 16 28 C 0.04 0.77 11.52 83.49 0.96 1.74 16 29 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.40 13.40 8.55 -92.70 -0.79 12.61 16 34 H 0.42 8.35 8.84 -92.71 -0.82 7.53 16 35 H 0.17 7.38 5.91 -2.91 -0.02 7.36 16 36 H 0.09 1.06 6.52 -2.39 -0.02 1.05 16 37 H 0.14 0.89 8.08 -2.38 -0.02 0.87 16 38 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 39 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 40 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.88 6.38 -2.39 -0.02 0.86 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 46 H 0.10 0.96 8.09 -2.39 -0.02 0.94 16 47 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.23 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -76.15 389.28 -2.23 -78.38 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.62 Total: 29.71 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 8.09 Total: 22.83 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -10.06 Total: -135.13 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.67 Total: -39.45 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -76.15 -2.23 -78.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274804687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.875 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds