Wall clock time and date at job start Tue Mar 31 2020 20:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47463 * 2 1 4 4 N 1.28715 * 126.03840 * 264.95359 * 3 2 1 5 5 N 1.28510 * 110.63855 * 180.02562 * 4 3 2 6 6 C 1.33326 * 109.44050 * 359.73007 * 5 4 3 7 7 C 1.37008 * 106.37063 * 0.42544 * 6 5 4 8 8 C 1.47232 * 127.18954 * 179.84785 * 7 6 5 9 9 O 1.21617 * 119.99936 * 189.25973 * 8 7 6 10 10 N 1.34773 * 120.00064 * 9.26067 * 8 7 6 11 11 C 1.46502 * 119.99889 * 359.30446 * 10 8 7 12 12 C 1.50693 * 109.47532 * 277.42681 * 11 10 8 13 13 H 1.08007 * 120.00172 * 5.08692 * 12 11 10 14 14 C 1.37883 * 120.00430 * 185.08797 * 12 11 10 15 15 N 1.31515 * 119.99298 * 5.01547 * 14 12 11 16 16 Si 1.86792 * 120.00340 * 185.01190 * 14 12 11 17 17 H 1.48500 * 109.46885 * 90.00019 * 16 14 12 18 18 H 1.48495 * 109.47326 * 209.99912 * 16 14 12 19 19 H 1.48505 * 109.47223 * 330.00236 * 16 14 12 20 20 C 1.46498 * 120.00051 * 179.31474 * 10 8 7 21 21 C 1.52999 * 109.47404 * 89.99502 * 20 10 8 22 22 N 1.46902 * 109.47184 * 179.97438 * 21 20 10 23 23 C 1.47014 * 111.00116 * 293.63767 * 22 21 20 24 24 C 1.53096 * 109.25675 * 177.60479 * 23 22 21 25 25 O 1.43014 * 109.25798 * 56.85084 * 24 23 22 26 26 C 1.43017 * 113.73591 * 301.32725 * 25 24 23 27 27 C 1.47007 * 111.00206 * 169.99988 * 22 21 20 28 28 H 1.08992 * 109.47647 * 184.99481 * 1 2 3 29 29 H 1.09007 * 109.47112 * 304.99892 * 1 2 3 30 30 H 1.09004 * 109.46892 * 64.99392 * 1 2 3 31 31 H 1.09002 * 109.46708 * 240.00228 * 2 1 3 32 32 H 1.09001 * 109.46984 * 120.00185 * 2 1 3 33 33 H 1.07995 * 126.81377 * 180.27910 * 6 5 4 34 34 H 1.09002 * 109.47097 * 37.42733 * 11 10 8 35 35 H 1.09001 * 109.47119 * 157.42373 * 11 10 8 36 36 H 0.97004 * 119.99832 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46779 * 329.99163 * 20 10 8 38 38 H 1.09001 * 109.46715 * 209.99735 * 20 10 8 39 39 H 1.08998 * 109.46955 * 60.00278 * 21 20 10 40 40 H 1.08989 * 109.47232 * 300.00166 * 21 20 10 41 41 H 1.08995 * 109.50608 * 297.54046 * 23 22 21 42 42 H 1.08999 * 109.50764 * 57.67135 * 23 22 21 43 43 H 1.08999 * 109.51098 * 296.91005 * 24 23 22 44 44 H 1.09004 * 109.53892 * 176.80464 * 24 23 22 45 45 H 1.08999 * 109.50454 * 298.73324 * 26 25 24 46 46 H 1.09002 * 109.54098 * 178.62870 * 26 25 24 47 47 H 1.09003 * 109.50921 * 302.33079 * 27 22 21 48 48 H 1.09007 * 109.50900 * 62.41691 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3572 2.0646 -1.0368 5 7 2.7424 3.2425 -0.6968 6 6 2.6583 3.3719 0.6275 7 6 2.1959 2.1735 1.1040 8 6 1.9375 1.8141 2.5082 9 8 1.6882 0.6613 2.8048 10 7 1.9773 2.7625 3.4649 11 6 2.2926 4.1484 3.1096 12 6 3.7872 4.3146 3.0125 13 1 4.4339 3.4558 3.1157 14 6 4.3292 5.5631 2.7920 15 7 3.5504 6.6225 2.7648 16 14 6.1695 5.7498 2.5321 17 1 6.4793 5.6330 1.0845 18 1 6.6068 7.0802 3.0261 19 1 6.8855 4.6846 3.2790 20 6 1.7055 2.4076 4.8600 21 6 3.0136 2.0178 5.5513 22 7 2.7410 1.6625 6.9504 23 6 2.2861 2.8345 7.7126 24 6 1.9572 2.4081 9.1457 25 8 3.1088 1.7950 9.7315 26 6 3.5786 0.6499 9.0150 27 6 3.9238 1.0584 7.5806 28 1 -0.3634 -1.0237 0.0895 29 1 -0.3634 0.5895 0.8419 30 1 -0.3633 0.4344 -0.9314 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9076 4.2469 1.2093 34 1 1.8370 4.3900 2.1493 35 1 1.9016 4.8179 3.8758 36 1 3.9316 7.5009 2.6093 37 1 1.0126 1.5668 4.8926 38 1 1.2641 3.2622 5.3728 39 1 3.7063 2.8587 5.5187 40 1 3.4549 1.1634 5.0384 41 1 3.0746 3.5867 7.7285 42 1 1.3947 3.2504 7.2430 43 1 1.1322 1.6958 9.1334 44 1 1.6737 3.2833 9.7304 45 1 2.8008 -0.1136 8.9989 46 1 4.4679 0.2530 9.5046 47 1 4.2280 0.1779 7.0146 48 1 4.7389 1.7821 7.5937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293429323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:45 Heat of formation + Delta-G solvation = 46.420571 kcal Electronic energy + Delta-G solvation = -30847.016858 eV Core-core repulsion = 26747.557344 eV Total energy + Delta-G solvation = -4099.459514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.68126 -39.65592 -38.99227 -36.27965 -35.49205 -34.62372 -32.92805 -31.38410 -31.09865 -30.41832 -29.32073 -27.64711 -26.17026 -24.37207 -24.02753 -23.51533 -22.67062 -22.12280 -20.94402 -20.26527 -18.97952 -17.05365 -16.76310 -16.64043 -16.37878 -16.13215 -15.80557 -15.47327 -15.10335 -15.00053 -14.74839 -14.61118 -14.54597 -13.90766 -13.72952 -13.58585 -13.32809 -12.80682 -12.66939 -12.50152 -12.33476 -12.17870 -11.98115 -11.77884 -11.44270 -11.41155 -11.35108 -11.19866 -11.04637 -10.72732 -10.54158 -10.45036 -10.38148 -10.12068 -9.94911 -9.69705 -9.65333 -9.46233 -8.87892 -8.62566 -8.31510 -8.00919 -6.39269 -4.47822 1.55977 2.58152 2.99452 3.17080 3.24813 3.26631 3.48581 3.71523 3.80499 4.05826 4.20547 4.72992 4.85881 4.92944 4.94935 4.97836 5.02011 5.04598 5.14030 5.26780 5.27085 5.37595 5.42832 5.52629 5.56231 5.58176 5.62595 5.67525 5.79714 5.84564 5.88041 5.93827 5.96646 6.04853 6.15661 6.21789 6.35427 6.45914 6.89774 6.95481 7.00139 7.04667 7.10867 7.12301 7.27800 7.56142 7.77536 7.97508 8.51860 8.67800 9.00342 9.19555 10.65578 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.004416 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.191366 B = 6339.767337 C = 8575.232503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 N -0.266 5.266 4 N -0.081 5.081 5 N -0.292 5.292 6 C 0.011 3.989 7 C -0.078 4.078 8 C 0.597 3.403 9 O -0.569 6.569 10 N -0.577 5.577 11 C 0.213 3.787 12 C -0.548 4.548 13 H 0.065 0.935 14 C 0.072 3.928 15 N -0.878 5.878 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.133 3.867 21 C 0.043 3.957 22 N -0.535 5.535 23 C 0.012 3.988 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.066 3.934 27 C 0.018 3.982 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.271 0.729 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -9.867 6.593 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.011 4.011 3 N -0.065 5.065 4 N -0.061 5.061 5 N -0.155 5.155 6 C -0.146 4.146 7 C -0.210 4.210 8 C 0.384 3.616 9 O -0.450 6.450 10 N -0.306 5.306 11 C 0.093 3.907 12 C -0.586 4.586 13 H 0.083 0.917 14 C -0.133 4.133 15 N -0.515 5.515 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.198 1.198 20 C 0.009 3.991 21 C -0.086 4.086 22 N -0.261 5.261 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.307 6.307 26 C -0.011 4.011 27 C -0.110 4.110 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.269 0.731 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.927 -10.534 5.369 12.809 hybrid contribution 1.580 0.690 0.620 1.832 sum -3.348 -9.844 5.990 11.999 Atomic orbital electron populations 1.22060 0.93361 1.03474 1.03047 1.22159 0.96219 0.76859 1.05820 1.47724 1.41661 1.13038 1.04126 1.78089 1.14999 1.00875 1.12154 1.74937 1.17786 1.08563 1.14245 1.26450 0.97158 1.00303 0.90714 1.21867 1.14584 0.93850 0.90669 1.16652 0.77173 0.84792 0.83009 1.90688 1.52204 1.19059 1.83040 1.47852 1.66267 1.10804 1.05724 1.20165 0.96539 0.75622 0.98330 1.21403 0.91303 0.94225 1.51685 0.91667 1.24940 0.98710 0.95376 0.94322 1.69910 1.35793 0.99019 1.46748 0.86531 0.84508 0.77683 0.79258 1.19732 1.20848 1.19802 1.21236 0.96422 1.00927 0.80471 1.22506 0.98305 1.01081 0.86689 1.62176 1.32948 1.28477 1.02455 1.22857 1.01629 0.92456 0.94642 1.22673 0.88004 0.97820 0.92716 1.87960 1.46704 1.44556 1.51518 1.22641 0.99552 0.88078 0.90860 1.22743 0.92163 1.00186 0.95910 0.90080 0.91509 0.91950 0.88241 0.86602 0.73133 0.93340 0.93274 0.91917 0.89988 0.90656 0.92559 0.90697 0.93493 0.89254 0.92403 0.88608 0.92385 0.88751 0.89770 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.11 1.52 6.58 -4.04 -0.03 1.49 16 3 N -0.27 -4.88 3.39 -57.37 -0.19 -5.07 16 4 N -0.08 -1.63 13.14 60.35 0.79 -0.83 16 5 N -0.29 -6.44 12.35 30.47 0.38 -6.07 16 6 C 0.01 0.25 9.33 -17.35 -0.16 0.09 16 7 C -0.08 -1.57 6.82 -82.33 -0.56 -2.13 16 8 C 0.60 11.84 7.58 -12.61 -0.10 11.75 16 9 O -0.57 -11.35 14.54 5.26 0.08 -11.27 16 10 N -0.58 -11.06 2.48 -176.41 -0.44 -11.50 16 11 C 0.21 4.55 4.76 -5.20 -0.02 4.52 16 12 C -0.55 -12.82 6.87 -34.44 -0.24 -13.06 16 13 H 0.07 1.59 7.82 -52.48 -0.41 1.18 16 14 C 0.07 1.76 5.10 -17.82 -0.09 1.67 16 15 N -0.88 -22.19 13.28 55.43 0.74 -21.46 16 16 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.13 2.20 5.38 -4.04 -0.02 2.17 16 21 C 0.04 0.69 5.28 -3.82 -0.02 0.67 16 22 N -0.53 -7.45 4.73 -234.32 -1.11 -8.56 16 23 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 24 C 0.06 0.72 7.01 37.21 0.26 0.98 16 25 O -0.39 -4.97 10.83 -35.23 -0.38 -5.35 16 26 C 0.07 0.72 7.01 37.20 0.26 0.98 16 27 C 0.02 0.23 5.64 -3.72 -0.02 0.21 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.12 1.65 6.58 -51.93 -0.34 1.30 16 33 H 0.25 5.87 3.13 -52.49 -0.16 5.71 16 34 H 0.05 1.09 4.89 -51.93 -0.25 0.84 16 35 H 0.05 1.09 7.80 -51.93 -0.40 0.69 16 36 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 37 H 0.08 1.36 7.43 -51.93 -0.39 0.97 16 38 H 0.08 1.15 6.22 -51.93 -0.32 0.83 16 39 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 40 H 0.07 1.31 8.04 -51.94 -0.42 0.89 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.07 6.38 -51.93 -0.33 0.74 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -27.78 382.87 -7.01 -34.79 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.24 Total: 6.88 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.38 Total: 7.95 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.17 Total: -53.49 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.30 Total: -16.62 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.78 -7.01 -34.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293429323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.207 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds