Wall clock time and date at job start Tue Mar 31 2020 20:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47463 * 2 1 4 4 N 1.28715 * 126.03840 * 264.95359 * 3 2 1 5 5 N 1.28510 * 110.63855 * 180.02562 * 4 3 2 6 6 C 1.33326 * 109.44050 * 359.73007 * 5 4 3 7 7 C 1.37008 * 106.37063 * 0.42544 * 6 5 4 8 8 C 1.47232 * 127.18954 * 179.84785 * 7 6 5 9 9 O 1.21617 * 119.99936 * 189.25973 * 8 7 6 10 10 N 1.34773 * 120.00064 * 9.26067 * 8 7 6 11 11 C 1.46502 * 119.99889 * 359.30446 * 10 8 7 12 12 C 1.50693 * 109.47532 * 277.42681 * 11 10 8 13 13 H 1.08007 * 120.00172 * 5.08692 * 12 11 10 14 14 C 1.37883 * 120.00430 * 185.08797 * 12 11 10 15 15 N 1.31515 * 119.99298 * 5.01547 * 14 12 11 16 16 Si 1.86792 * 120.00340 * 185.01190 * 14 12 11 17 17 H 1.48500 * 109.46885 * 90.00019 * 16 14 12 18 18 H 1.48495 * 109.47326 * 209.99912 * 16 14 12 19 19 H 1.48505 * 109.47223 * 330.00236 * 16 14 12 20 20 C 1.46498 * 120.00051 * 179.31474 * 10 8 7 21 21 C 1.52999 * 109.47404 * 89.99502 * 20 10 8 22 22 N 1.46902 * 109.47184 * 179.97438 * 21 20 10 23 23 C 1.47014 * 111.00116 * 293.63767 * 22 21 20 24 24 C 1.53096 * 109.25675 * 177.60479 * 23 22 21 25 25 O 1.43014 * 109.25798 * 56.85084 * 24 23 22 26 26 C 1.43017 * 113.73591 * 301.32725 * 25 24 23 27 27 C 1.47007 * 111.00206 * 169.99988 * 22 21 20 28 28 H 1.08992 * 109.47647 * 184.99481 * 1 2 3 29 29 H 1.09007 * 109.47112 * 304.99892 * 1 2 3 30 30 H 1.09004 * 109.46892 * 64.99392 * 1 2 3 31 31 H 1.09002 * 109.46708 * 240.00228 * 2 1 3 32 32 H 1.09001 * 109.46984 * 120.00185 * 2 1 3 33 33 H 1.07995 * 126.81377 * 180.27910 * 6 5 4 34 34 H 1.09002 * 109.47097 * 37.42733 * 11 10 8 35 35 H 1.09001 * 109.47119 * 157.42373 * 11 10 8 36 36 H 0.97004 * 119.99832 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46779 * 329.99163 * 20 10 8 38 38 H 1.09001 * 109.46715 * 209.99735 * 20 10 8 39 39 H 1.08998 * 109.46955 * 60.00278 * 21 20 10 40 40 H 1.08989 * 109.47232 * 300.00166 * 21 20 10 41 41 H 1.08995 * 109.50608 * 297.54046 * 23 22 21 42 42 H 1.08999 * 109.50764 * 57.67135 * 23 22 21 43 43 H 1.08999 * 109.51098 * 296.91005 * 24 23 22 44 44 H 1.09004 * 109.53892 * 176.80464 * 24 23 22 45 45 H 1.08999 * 109.50454 * 298.73324 * 26 25 24 46 46 H 1.09002 * 109.54098 * 178.62870 * 26 25 24 47 47 H 1.09003 * 109.50921 * 302.33079 * 27 22 21 48 48 H 1.09007 * 109.50900 * 62.41691 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3572 2.0646 -1.0368 5 7 2.7424 3.2425 -0.6968 6 6 2.6583 3.3719 0.6275 7 6 2.1959 2.1735 1.1040 8 6 1.9375 1.8141 2.5082 9 8 1.6882 0.6613 2.8048 10 7 1.9773 2.7625 3.4649 11 6 2.2926 4.1484 3.1096 12 6 3.7872 4.3146 3.0125 13 1 4.4339 3.4558 3.1157 14 6 4.3292 5.5631 2.7920 15 7 3.5504 6.6225 2.7648 16 14 6.1695 5.7498 2.5321 17 1 6.4793 5.6330 1.0845 18 1 6.6068 7.0802 3.0261 19 1 6.8855 4.6846 3.2790 20 6 1.7055 2.4076 4.8600 21 6 3.0136 2.0178 5.5513 22 7 2.7410 1.6625 6.9504 23 6 2.2861 2.8345 7.7126 24 6 1.9572 2.4081 9.1457 25 8 3.1088 1.7950 9.7315 26 6 3.5786 0.6499 9.0150 27 6 3.9238 1.0584 7.5806 28 1 -0.3634 -1.0237 0.0895 29 1 -0.3634 0.5895 0.8419 30 1 -0.3633 0.4344 -0.9314 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9076 4.2469 1.2093 34 1 1.8370 4.3900 2.1493 35 1 1.9016 4.8179 3.8758 36 1 3.9316 7.5009 2.6093 37 1 1.0126 1.5668 4.8926 38 1 1.2641 3.2622 5.3728 39 1 3.7063 2.8587 5.5187 40 1 3.4549 1.1634 5.0384 41 1 3.0746 3.5867 7.7285 42 1 1.3947 3.2504 7.2430 43 1 1.1322 1.6958 9.1334 44 1 1.6737 3.2833 9.7304 45 1 2.8008 -0.1136 8.9989 46 1 4.4679 0.2530 9.5046 47 1 4.2280 0.1779 7.0146 48 1 4.7389 1.7821 7.5937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293429323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:44 Heat of formation + Delta-G solvation = 27.479715 kcal Electronic energy + Delta-G solvation = -30847.838196 eV Core-core repulsion = 26747.557344 eV Total energy + Delta-G solvation = -4100.280852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.26438 -40.93774 -40.29365 -37.68287 -36.77355 -36.04916 -34.68384 -32.85381 -32.13733 -31.70755 -30.71180 -29.35048 -27.39641 -25.71263 -25.16729 -24.97589 -24.18728 -23.61268 -22.30456 -21.32573 -20.48636 -18.81046 -18.27351 -18.16262 -17.65556 -17.34572 -17.11732 -16.81400 -16.48570 -16.20738 -16.03820 -15.94946 -15.83172 -15.25776 -15.02590 -14.97048 -14.59508 -14.34039 -14.11778 -13.90810 -13.49521 -13.48306 -13.14512 -13.11427 -12.95889 -12.85024 -12.58305 -12.55754 -12.30863 -12.21622 -12.07229 -11.92715 -11.82500 -11.69940 -11.42500 -11.17883 -11.05615 -10.70545 -10.67090 -10.33371 -9.67009 -9.43456 -8.28126 -6.39220 -0.01932 1.16667 1.33551 1.38227 1.43719 1.47555 2.01538 2.14131 2.36356 2.81233 2.99443 3.04255 3.37005 3.53556 3.84176 3.88963 3.93313 3.94308 4.03331 4.11121 4.20475 4.22461 4.26753 4.33947 4.41171 4.42248 4.50063 4.59802 4.65458 4.72193 4.74794 4.79930 4.84001 4.90925 4.92102 4.99193 5.05777 5.09460 5.13714 5.36253 5.52316 5.56460 5.68281 5.88866 5.93295 5.93869 6.18953 6.32559 6.69276 7.02175 7.29919 7.38739 8.76391 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.004416 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.191366 B = 6339.767337 C = 8575.232503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.253 5.253 4 N -0.079 5.079 5 N -0.318 5.318 6 C -0.002 4.002 7 C -0.083 4.083 8 C 0.597 3.403 9 O -0.568 6.568 10 N -0.577 5.577 11 C 0.228 3.772 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.040 3.960 15 N -0.902 5.902 16 Si 0.936 3.064 17 H -0.278 1.278 18 H -0.278 1.278 19 H -0.274 1.274 20 C 0.135 3.865 21 C 0.057 3.943 22 N -0.532 5.532 23 C 0.011 3.989 24 C 0.067 3.933 25 O -0.405 6.405 26 C 0.069 3.931 27 C 0.015 3.985 28 H 0.115 0.885 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.237 0.763 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.272 0.728 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.068 0.932 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 -11.670 7.276 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.052 5.052 4 N -0.059 5.059 5 N -0.181 5.181 6 C -0.161 4.161 7 C -0.216 4.216 8 C 0.384 3.616 9 O -0.449 6.449 10 N -0.306 5.306 11 C 0.107 3.893 12 C -0.578 4.578 13 H 0.071 0.929 14 C -0.164 4.164 15 N -0.540 5.540 16 Si 0.762 3.238 17 H -0.203 1.203 18 H -0.203 1.203 19 H -0.199 1.199 20 C 0.012 3.988 21 C -0.072 4.072 22 N -0.258 5.258 23 C -0.117 4.117 24 C -0.009 4.009 25 O -0.324 6.324 26 C -0.008 4.008 27 C -0.113 4.113 28 H 0.134 0.866 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.253 0.747 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.133 0.867 47 H 0.109 0.891 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.598 -12.364 6.065 14.866 hybrid contribution 1.749 1.136 0.400 2.123 sum -3.849 -11.228 6.465 13.516 Atomic orbital electron populations 1.22051 0.91616 1.05287 1.02233 1.22655 0.97620 0.74525 1.07276 1.48126 1.39976 1.14098 1.03039 1.77993 1.14909 1.00472 1.12506 1.74887 1.19067 1.09741 1.14379 1.26171 0.98396 1.00610 0.90891 1.21915 1.14490 0.93800 0.91365 1.16622 0.77217 0.84858 0.82922 1.90679 1.52356 1.18857 1.83040 1.47824 1.66044 1.09905 1.06804 1.19843 0.95252 0.76606 0.97570 1.21431 0.92173 0.93573 1.50669 0.92946 1.25398 1.01101 0.95394 0.94477 1.69959 1.36776 0.99257 1.47987 0.85872 0.81682 0.77640 0.78574 1.20349 1.20332 1.19923 1.21361 0.96674 1.01661 0.79107 1.22233 0.97322 0.99282 0.88316 1.62222 1.33433 1.28787 1.01367 1.22941 1.01219 0.91656 0.95920 1.22773 0.87837 0.98835 0.91489 1.87944 1.47298 1.45175 1.51985 1.22749 1.00791 0.87754 0.89519 1.22849 0.91242 0.99929 0.97267 0.86630 0.93727 0.91581 0.85140 0.86799 0.74719 0.94151 0.94068 0.91885 0.89370 0.89358 0.95269 0.92068 0.95336 0.88507 0.91255 0.86746 0.91390 0.86669 0.89091 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 10.24 71.98 0.74 -2.53 16 2 C 0.10 2.47 6.58 86.38 0.57 3.04 16 3 N -0.25 -8.97 3.39 -335.42 -1.14 -10.11 16 4 N -0.08 -3.09 13.14 37.02 0.49 -2.61 16 5 N -0.32 -14.12 12.35 -57.50 -0.71 -14.83 16 6 C 0.00 -0.10 9.33 84.18 0.79 0.69 16 7 C -0.08 -3.34 6.82 40.41 0.28 -3.06 16 8 C 0.60 23.47 7.58 86.61 0.66 24.12 16 9 O -0.57 -22.00 14.54 -4.09 -0.06 -22.06 16 10 N -0.58 -22.13 2.48 -830.28 -2.06 -24.19 16 11 C 0.23 9.90 4.76 85.63 0.41 10.31 16 12 C -0.54 -25.76 6.87 25.60 0.18 -25.59 16 13 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 14 C 0.04 1.95 5.10 84.66 0.43 2.38 16 15 N -0.90 -46.24 13.28 21.45 0.28 -45.96 16 16 Si 0.94 40.90 29.54 68.60 2.03 42.93 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.13 4.37 5.38 86.38 0.46 4.84 16 21 C 0.06 1.87 5.28 86.30 0.46 2.32 16 22 N -0.53 -14.41 4.73 -895.26 -4.23 -18.64 16 23 C 0.01 0.26 5.44 86.31 0.47 0.73 16 24 C 0.07 1.37 7.01 72.01 0.50 1.87 16 25 O -0.41 -9.59 10.83 -148.98 -1.61 -11.20 16 26 C 0.07 1.37 7.01 72.01 0.50 1.88 16 27 C 0.02 0.37 5.64 86.31 0.49 0.86 16 28 H 0.12 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.11 2.98 6.58 -2.39 -0.02 2.97 16 33 H 0.24 11.32 3.13 -2.91 -0.01 11.31 16 34 H 0.04 1.87 4.89 -2.39 -0.01 1.86 16 35 H 0.04 1.86 7.80 -2.39 -0.02 1.84 16 36 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 37 H 0.09 2.80 7.43 -2.39 -0.02 2.78 16 38 H 0.09 2.64 6.22 -2.39 -0.01 2.62 16 39 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 40 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 41 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 2.20 6.38 -2.39 -0.02 2.19 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 48 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -59.42 382.87 0.88 -58.53 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.97 Total: 26.28 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 6.92 Total: 21.86 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -7.37 Total: -116.35 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.67 Total: -33.26 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -59.42 0.88 -58.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293429323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.012 kcal (2) G-P(sol) polarization free energy of solvation -59.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds