Wall clock time and date at job start Tue Mar 31 2020 20:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47245 * 2 1 4 4 C 1.50696 * 109.47054 * 239.99551 * 2 1 3 5 5 O 1.21276 * 120.00431 * 266.40034 * 4 2 1 6 6 N 1.34782 * 119.99553 * 86.39834 * 4 2 1 7 7 C 1.46494 * 119.99853 * 0.02562 * 6 4 2 8 8 C 1.46498 * 119.99814 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.47158 * 89.99861 * 8 6 4 10 10 H 1.08002 * 119.99651 * 0.02562 * 9 8 6 11 11 C 1.37870 * 120.00173 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00087 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 120.00062 * 179.72948 * 11 9 8 14 14 H 1.48504 * 109.46740 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47035 * 119.99728 * 13 11 9 16 16 H 1.48497 * 109.46953 * 240.00046 * 13 11 9 17 17 N 1.46904 * 109.46887 * 119.99682 * 2 1 3 18 18 C 1.47016 * 110.99845 * 49.35879 * 17 2 1 19 19 C 1.53102 * 109.25768 * 182.38737 * 18 17 2 20 20 O 1.43009 * 109.25945 * 303.15713 * 19 18 17 21 21 C 1.43020 * 113.74209 * 58.66668 * 20 19 18 22 22 H 1.08998 * 109.50309 * 61.26831 * 21 20 19 23 23 C 1.52999 * 109.50695 * 181.39461 * 21 20 19 24 24 N 1.46499 * 109.47496 * 294.78611 * 23 21 20 25 25 C 1.34427 * 126.82951 * 124.70700 * 24 23 21 26 26 N 1.30830 * 108.08056 * 179.89257 * 25 24 23 27 27 C 1.33243 * 109.82850 * 0.38411 * 26 25 24 28 28 N 1.30712 * 108.94713 * 359.76331 * 27 26 25 29 29 C 1.47012 * 110.99871 * 172.99478 * 17 2 1 30 30 H 1.09000 * 109.46942 * 60.00012 * 1 2 3 31 31 H 1.08992 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47133 * 300.00556 * 1 2 3 33 33 H 1.08998 * 109.46978 * 269.99470 * 7 6 4 34 34 H 1.08998 * 109.47887 * 30.00271 * 7 6 4 35 35 H 1.09006 * 109.46971 * 149.99993 * 7 6 4 36 36 H 1.09000 * 109.47302 * 330.00672 * 8 6 4 37 37 H 1.08993 * 109.47668 * 210.00111 * 8 6 4 38 38 H 0.96998 * 120.00205 * 180.02562 * 12 11 9 39 39 H 1.08993 * 109.50885 * 302.32857 * 18 17 2 40 40 H 1.09003 * 109.50455 * 62.45674 * 18 17 2 41 41 H 1.08994 * 109.50479 * 183.22041 * 19 18 17 42 42 H 1.08997 * 109.53568 * 63.11013 * 19 18 17 43 43 H 1.09007 * 109.47226 * 54.78433 * 23 21 20 44 44 H 1.09005 * 109.47142 * 174.77951 * 23 21 20 45 45 H 1.08000 * 125.95345 * 0.04715 * 25 24 23 46 46 H 1.07995 * 125.52648 * 179.71932 * 27 26 25 47 47 H 1.09004 * 109.50773 * 297.54266 * 29 17 2 48 48 H 1.08998 * 109.50703 * 57.62940 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2966 -1.8931 -1.1823 6 7 2.1878 -0.0315 -2.3843 7 6 1.8690 1.3971 -2.4421 8 6 2.6766 -0.7220 -3.5803 9 6 1.5075 -1.2730 -4.3553 10 1 0.5010 -1.1234 -3.9934 11 6 1.7228 -1.9681 -5.5264 12 7 2.9484 -2.1508 -5.9668 13 14 0.2740 -2.6576 -6.4832 14 1 -0.9892 -2.3241 -5.7771 15 1 0.2524 -2.0644 -7.8443 16 1 0.4072 -4.1329 -6.5881 17 7 2.0196 -0.6925 1.1995 18 6 1.3524 -1.9917 1.3670 19 6 1.8472 -2.6509 2.6572 20 8 3.2710 -2.7758 2.6071 21 6 3.9530 -1.5292 2.4451 22 1 3.7328 -0.8810 3.2933 23 6 5.4608 -1.7779 2.3690 24 7 5.9335 -2.3092 3.6498 25 6 6.6136 -3.4519 3.8464 26 7 6.8512 -3.5676 5.1278 27 6 6.3331 -2.5272 5.7793 28 7 5.7606 -1.7288 4.9171 29 6 3.4796 -0.8587 1.1528 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.8228 1.5250 -2.7201 34 1 2.0431 1.8482 -1.4653 35 1 2.5039 1.8813 -3.1842 36 1 3.3341 -1.5396 -3.2846 37 1 3.2283 -0.0199 -4.2052 38 1 3.0999 -2.6395 -6.7909 39 1 0.2742 -1.8424 1.4248 40 1 1.5866 -2.6333 0.5175 41 1 1.3984 -3.6392 2.7563 42 1 1.5657 -2.0359 3.5119 43 1 5.6709 -2.4974 1.5775 44 1 5.9732 -0.8404 2.1531 45 1 6.9140 -4.1510 3.0800 46 1 6.3783 -2.3694 6.8467 47 1 3.7478 -1.4823 0.2999 48 1 3.9541 0.1175 1.0534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330649752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:06 Heat of formation + Delta-G solvation = 37.775069 kcal Electronic energy + Delta-G solvation = -30509.662121 eV Core-core repulsion = 26409.827709 eV Total energy + Delta-G solvation = -4099.834412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.13396 -40.50242 -38.72715 -35.93080 -34.87207 -34.64194 -32.75808 -31.66794 -31.28798 -30.86566 -28.10179 -27.92689 -26.01087 -25.39270 -24.33535 -23.24577 -22.18920 -22.08490 -21.18251 -20.44977 -18.47210 -17.48109 -16.86902 -16.70252 -16.55489 -16.52276 -15.75362 -15.37976 -15.12361 -14.94062 -14.68143 -14.52087 -14.36706 -14.21183 -13.92604 -13.67952 -13.17630 -13.07382 -12.65843 -12.51174 -12.25703 -12.20164 -12.08673 -11.94156 -11.73432 -11.64501 -11.33685 -11.13783 -10.88898 -10.83428 -10.67141 -10.60808 -10.24369 -10.15551 -9.91194 -9.82399 -9.76210 -9.68386 -9.55259 -8.52350 -7.96187 -7.75131 -6.13224 -4.18065 1.53619 2.15005 2.87350 3.17940 3.23189 3.31336 3.34982 3.51462 3.71437 3.84681 4.22443 4.35697 4.37483 4.63831 4.75169 4.86157 4.90145 4.95483 4.98461 5.07993 5.12364 5.19558 5.22314 5.33609 5.43887 5.46556 5.49587 5.54394 5.65006 5.81256 5.83968 5.89932 5.96235 6.06271 6.10020 6.18258 6.30861 6.31853 6.65020 6.81383 6.91110 6.94200 7.07377 7.31014 7.41705 7.82487 7.96804 8.13342 8.26194 8.78480 8.93922 9.47381 10.94974 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.002775 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.068101 B =10086.579578 C =10680.912035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.058 3.942 3 H 0.102 0.898 4 C 0.479 3.521 5 O -0.539 6.539 6 N -0.597 5.597 7 C 0.081 3.919 8 C 0.244 3.756 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.507 5.507 18 C -0.008 4.008 19 C 0.073 3.927 20 O -0.378 6.378 21 C 0.090 3.910 22 H 0.078 0.922 23 C 0.136 3.864 24 N -0.368 5.368 25 C 0.262 3.738 26 N -0.553 5.553 27 C 0.193 3.807 28 N -0.318 5.318 29 C 0.010 3.990 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.031 0.969 38 H 0.263 0.737 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.217 0.783 46 H 0.214 0.786 47 H 0.074 0.926 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 5.382 17.663 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.054 4.054 3 H 0.120 0.880 4 C 0.265 3.735 5 O -0.418 6.418 6 N -0.329 5.329 7 C -0.063 4.063 8 C 0.125 3.875 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.231 5.231 18 C -0.135 4.135 19 C -0.004 4.004 20 O -0.297 6.297 21 C 0.031 3.969 22 H 0.096 0.904 23 C 0.014 3.986 24 N -0.158 5.158 25 C -0.035 4.035 26 N -0.280 5.280 27 C -0.110 4.110 28 N -0.147 5.147 29 C -0.119 4.119 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.234 0.766 46 H 0.230 0.770 47 H 0.092 0.908 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.926 5.234 18.206 19.041 hybrid contribution -0.806 -0.592 -1.797 2.057 sum 1.120 4.642 16.409 17.089 Atomic orbital electron populations 1.21799 0.92110 1.03233 1.02729 1.21971 0.97441 0.98795 0.87195 0.87998 1.21395 0.79184 0.87864 0.85078 1.90596 1.51530 1.15328 1.84328 1.48310 1.63561 1.09270 1.11738 1.21718 1.01122 0.82247 1.01175 1.19314 0.95255 0.92750 0.80189 1.21416 0.93160 1.35044 1.06760 0.92525 1.24936 0.95943 0.95846 0.97379 1.69932 1.19509 1.41470 1.22430 0.86449 0.82491 0.78940 0.79585 1.19830 1.20889 1.20834 1.62741 1.04353 1.21012 1.34995 1.23186 0.99455 0.91192 0.99714 1.22613 0.80357 1.00935 0.96509 1.87953 1.18955 1.28826 1.93997 1.22267 0.90069 0.86730 0.97828 0.90393 1.21909 0.93803 1.02100 0.80805 1.50379 1.41118 1.17420 1.06855 1.26051 0.92803 0.89165 0.95451 1.70537 1.27633 1.26337 1.03512 1.25939 0.95082 0.89040 1.00892 1.77990 1.24975 1.23021 0.88669 1.22851 0.89432 1.01444 0.98173 0.91314 0.91632 0.91073 0.92960 0.92381 0.91283 0.93989 0.95072 0.92713 0.89670 0.89345 0.88635 0.92991 0.86882 0.87606 0.76629 0.76960 0.90775 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.57 37.16 0.32 -1.43 16 2 C 0.06 0.81 2.33 -68.86 -0.16 0.65 16 3 H 0.10 1.22 6.00 -51.93 -0.31 0.91 16 4 C 0.48 9.04 5.88 -10.98 -0.06 8.98 16 5 O -0.54 -12.24 11.87 5.56 0.07 -12.18 16 6 N -0.60 -11.79 2.86 -182.96 -0.52 -12.31 16 7 C 0.08 1.19 10.13 59.84 0.61 1.79 16 8 C 0.24 6.12 5.20 -5.19 -0.03 6.09 16 9 C -0.52 -14.46 9.39 -34.44 -0.32 -14.78 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 13 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 N -0.51 -6.86 4.81 -227.72 -1.09 -7.96 16 18 C -0.01 -0.11 4.76 -3.71 -0.02 -0.13 16 19 C 0.07 0.92 7.01 37.21 0.26 1.18 16 20 O -0.38 -5.31 10.42 -35.23 -0.37 -5.68 16 21 C 0.09 1.09 2.94 -26.68 -0.08 1.01 16 22 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 23 C 0.14 1.35 6.22 -4.04 -0.03 1.33 16 24 N -0.37 -4.16 3.64 -62.63 -0.23 -4.39 16 25 C 0.26 2.76 12.63 -90.66 -1.14 1.62 16 26 N -0.55 -6.71 11.19 -15.83 -0.18 -6.89 16 27 C 0.19 2.17 13.03 -91.81 -1.20 0.98 16 28 N -0.32 -3.99 12.53 29.29 0.37 -3.63 16 29 C 0.01 0.13 4.44 -3.71 -0.02 0.11 16 30 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 31 H 0.06 0.89 6.26 -51.93 -0.33 0.57 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.65 5.83 -51.93 -0.30 0.34 16 35 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 36 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 37 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.09 1.07 6.05 -51.93 -0.31 0.76 16 40 H 0.09 1.57 5.59 -51.93 -0.29 1.28 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.11 1.00 8.09 -51.92 -0.42 0.58 16 44 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.22 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.21 1.59 8.06 -52.49 -0.42 1.17 16 47 H 0.07 1.21 5.87 -51.93 -0.31 0.90 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -35.30 383.47 -9.66 -44.97 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.23 Total: 2.12 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.97 Total: 8.99 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.92 Total: -60.45 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.30 Total: -17.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.30 -9.66 -44.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330649752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.741 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds