Wall clock time and date at job start Tue Mar 31 2020 20:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47245 * 2 1 4 4 C 1.50696 * 109.47054 * 239.99551 * 2 1 3 5 5 O 1.21276 * 120.00431 * 266.40034 * 4 2 1 6 6 N 1.34782 * 119.99553 * 86.39834 * 4 2 1 7 7 C 1.46494 * 119.99853 * 0.02562 * 6 4 2 8 8 C 1.46498 * 119.99814 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.47158 * 89.99861 * 8 6 4 10 10 H 1.08002 * 119.99651 * 0.02562 * 9 8 6 11 11 C 1.37870 * 120.00173 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00087 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 120.00062 * 179.72948 * 11 9 8 14 14 H 1.48504 * 109.46740 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47035 * 119.99728 * 13 11 9 16 16 H 1.48497 * 109.46953 * 240.00046 * 13 11 9 17 17 N 1.46904 * 109.46887 * 119.99682 * 2 1 3 18 18 C 1.47016 * 110.99845 * 49.35879 * 17 2 1 19 19 C 1.53102 * 109.25768 * 182.38737 * 18 17 2 20 20 O 1.43009 * 109.25945 * 303.15713 * 19 18 17 21 21 C 1.43020 * 113.74209 * 58.66668 * 20 19 18 22 22 H 1.08998 * 109.50309 * 61.26831 * 21 20 19 23 23 C 1.52999 * 109.50695 * 181.39461 * 21 20 19 24 24 N 1.46499 * 109.47496 * 294.78611 * 23 21 20 25 25 C 1.34427 * 126.82951 * 124.70700 * 24 23 21 26 26 N 1.30830 * 108.08056 * 179.89257 * 25 24 23 27 27 C 1.33243 * 109.82850 * 0.38411 * 26 25 24 28 28 N 1.30712 * 108.94713 * 359.76331 * 27 26 25 29 29 C 1.47012 * 110.99871 * 172.99478 * 17 2 1 30 30 H 1.09000 * 109.46942 * 60.00012 * 1 2 3 31 31 H 1.08992 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47133 * 300.00556 * 1 2 3 33 33 H 1.08998 * 109.46978 * 269.99470 * 7 6 4 34 34 H 1.08998 * 109.47887 * 30.00271 * 7 6 4 35 35 H 1.09006 * 109.46971 * 149.99993 * 7 6 4 36 36 H 1.09000 * 109.47302 * 330.00672 * 8 6 4 37 37 H 1.08993 * 109.47668 * 210.00111 * 8 6 4 38 38 H 0.96998 * 120.00205 * 180.02562 * 12 11 9 39 39 H 1.08993 * 109.50885 * 302.32857 * 18 17 2 40 40 H 1.09003 * 109.50455 * 62.45674 * 18 17 2 41 41 H 1.08994 * 109.50479 * 183.22041 * 19 18 17 42 42 H 1.08997 * 109.53568 * 63.11013 * 19 18 17 43 43 H 1.09007 * 109.47226 * 54.78433 * 23 21 20 44 44 H 1.09005 * 109.47142 * 174.77951 * 23 21 20 45 45 H 1.08000 * 125.95345 * 0.04715 * 25 24 23 46 46 H 1.07995 * 125.52648 * 179.71932 * 27 26 25 47 47 H 1.09004 * 109.50773 * 297.54266 * 29 17 2 48 48 H 1.08998 * 109.50703 * 57.62940 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2966 -1.8931 -1.1823 6 7 2.1878 -0.0315 -2.3843 7 6 1.8690 1.3971 -2.4421 8 6 2.6766 -0.7220 -3.5803 9 6 1.5075 -1.2730 -4.3553 10 1 0.5010 -1.1234 -3.9934 11 6 1.7228 -1.9681 -5.5264 12 7 2.9484 -2.1508 -5.9668 13 14 0.2740 -2.6576 -6.4832 14 1 -0.9892 -2.3241 -5.7771 15 1 0.2524 -2.0644 -7.8443 16 1 0.4072 -4.1329 -6.5881 17 7 2.0196 -0.6925 1.1995 18 6 1.3524 -1.9917 1.3670 19 6 1.8472 -2.6509 2.6572 20 8 3.2710 -2.7758 2.6071 21 6 3.9530 -1.5292 2.4451 22 1 3.7328 -0.8810 3.2933 23 6 5.4608 -1.7779 2.3690 24 7 5.9335 -2.3092 3.6498 25 6 6.6136 -3.4519 3.8464 26 7 6.8512 -3.5676 5.1278 27 6 6.3331 -2.5272 5.7793 28 7 5.7606 -1.7288 4.9171 29 6 3.4796 -0.8587 1.1528 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.8228 1.5250 -2.7201 34 1 2.0431 1.8482 -1.4653 35 1 2.5039 1.8813 -3.1842 36 1 3.3341 -1.5396 -3.2846 37 1 3.2283 -0.0199 -4.2052 38 1 3.0999 -2.6395 -6.7909 39 1 0.2742 -1.8424 1.4248 40 1 1.5866 -2.6333 0.5175 41 1 1.3984 -3.6392 2.7563 42 1 1.5657 -2.0359 3.5119 43 1 5.6709 -2.4974 1.5775 44 1 5.9732 -0.8404 2.1531 45 1 6.9140 -4.1510 3.0800 46 1 6.3783 -2.3694 6.8467 47 1 3.7478 -1.4823 0.2999 48 1 3.9541 0.1175 1.0534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330649752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:06 Heat of formation + Delta-G solvation = 13.371047 kcal Electronic energy + Delta-G solvation = -30510.720359 eV Core-core repulsion = 26409.827709 eV Total energy + Delta-G solvation = -4100.892649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.96269 -41.74869 -39.97258 -37.20520 -36.40166 -35.54355 -34.77940 -32.69272 -32.15359 -31.98607 -29.75509 -29.05636 -27.39602 -26.35825 -25.85826 -24.57536 -23.33943 -22.92206 -22.26247 -21.53882 -19.85985 -18.72084 -18.35092 -18.16912 -17.72864 -17.59403 -16.94108 -16.62149 -16.31942 -16.13885 -15.97216 -15.91517 -15.44997 -15.22789 -15.00815 -14.83087 -14.59911 -14.01708 -13.96488 -13.84607 -13.54590 -13.48462 -13.34461 -13.10776 -13.01437 -12.86151 -12.76720 -12.67116 -12.53288 -12.26439 -12.15757 -11.87590 -11.69612 -11.63567 -11.10527 -11.03216 -10.79417 -10.68125 -10.67382 -10.59335 -9.46319 -9.21132 -8.25803 -6.40092 0.71429 1.33174 1.35454 1.35666 1.46603 1.74978 2.04542 2.28822 2.42884 2.58979 2.66045 3.04069 3.47477 3.54116 3.65227 3.76039 3.81655 3.93850 3.98361 4.08034 4.11677 4.15417 4.29241 4.37681 4.41137 4.45227 4.48466 4.55369 4.63434 4.73745 4.81140 4.85879 4.89860 4.94760 5.00443 5.11605 5.19446 5.20904 5.28533 5.51952 5.53739 5.72134 5.79581 5.81694 5.88128 6.03244 6.07607 6.66607 6.76347 7.14135 7.25610 7.44813 8.81200 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.002775 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.068101 B =10086.579578 C =10680.912035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.068 3.932 3 H 0.133 0.867 4 C 0.472 3.528 5 O -0.585 6.585 6 N -0.606 5.606 7 C 0.076 3.924 8 C 0.260 3.740 9 C -0.538 4.538 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.964 3.036 14 H -0.267 1.267 15 H -0.269 1.269 16 H -0.283 1.283 17 N -0.496 5.496 18 C -0.003 4.003 19 C 0.074 3.926 20 O -0.398 6.398 21 C 0.098 3.902 22 H 0.075 0.925 23 C 0.136 3.864 24 N -0.374 5.374 25 C 0.261 3.739 26 N -0.578 5.578 27 C 0.190 3.810 28 N -0.345 5.345 29 C 0.013 3.987 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.070 0.930 36 H -0.003 1.003 37 H 0.022 0.978 38 H 0.267 0.733 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.247 0.753 46 H 0.242 0.758 47 H 0.039 0.961 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 6.927 18.807 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 H 0.150 0.850 4 C 0.260 3.740 5 O -0.467 6.467 6 N -0.337 5.337 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.577 4.577 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.789 3.211 14 H -0.191 1.191 15 H -0.194 1.194 16 H -0.209 1.209 17 N -0.220 5.220 18 C -0.131 4.131 19 C -0.003 4.003 20 O -0.317 6.317 21 C 0.039 3.961 22 H 0.093 0.907 23 C 0.014 3.986 24 N -0.163 5.163 25 C -0.036 4.036 26 N -0.306 5.306 27 C -0.112 4.112 28 N -0.174 5.174 29 C -0.116 4.116 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.015 0.985 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.263 0.737 46 H 0.258 0.742 47 H 0.057 0.943 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.756 6.827 19.367 20.549 hybrid contribution -0.407 -1.087 -2.122 2.419 sum 0.349 5.740 17.245 18.179 Atomic orbital electron populations 1.21823 0.90561 1.02692 1.04442 1.22120 0.98531 0.99355 0.84333 0.84953 1.22441 0.77983 0.87532 0.86030 1.90594 1.53157 1.17741 1.85177 1.48332 1.63630 1.11334 1.10437 1.22004 1.01579 0.79176 1.03862 1.18737 0.93922 0.91579 0.81905 1.21689 0.93456 1.35306 1.07217 0.93080 1.25823 0.98663 0.96114 0.98501 1.70044 1.21528 1.42198 1.23011 0.85419 0.79194 0.77931 0.78588 1.19145 1.19415 1.20902 1.62857 1.04581 1.20528 1.33997 1.23105 1.00455 0.90783 0.98768 1.22677 0.79900 1.01647 0.96035 1.87935 1.19692 1.30125 1.93992 1.22256 0.91119 0.85915 0.96812 0.90710 1.22018 0.92579 1.03418 0.80595 1.50439 1.41338 1.17679 1.06847 1.26704 0.91902 0.89159 0.95811 1.70564 1.28620 1.27060 1.04348 1.26560 0.94117 0.88430 1.02095 1.77934 1.26088 1.24052 0.89296 1.22846 0.89351 1.02003 0.97378 0.90968 0.93346 0.87915 0.92195 0.88135 0.91109 0.98518 0.96044 0.92434 0.88211 0.93555 0.87759 0.91690 0.86161 0.85579 0.73731 0.74246 0.94272 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.57 71.98 0.62 -2.44 16 2 C 0.07 1.76 2.33 44.17 0.10 1.87 16 3 H 0.13 2.62 6.00 -2.39 -0.01 2.61 16 4 C 0.47 17.91 5.88 87.65 0.52 18.42 16 5 O -0.59 -27.84 11.87 -3.02 -0.04 -27.88 16 6 N -0.61 -24.00 2.86 -851.15 -2.43 -26.43 16 7 C 0.08 2.06 10.13 127.77 1.29 3.35 16 8 C 0.26 13.55 5.20 85.63 0.45 14.00 16 9 C -0.54 -30.31 9.39 25.60 0.24 -30.07 16 10 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 11 C 0.01 0.45 5.46 84.65 0.46 0.91 16 12 N -0.93 -55.29 13.29 21.44 0.28 -55.00 16 13 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 N -0.50 -12.67 4.81 -874.37 -4.20 -16.87 16 18 C 0.00 -0.09 4.76 86.32 0.41 0.32 16 19 C 0.07 1.81 7.01 72.02 0.50 2.31 16 20 O -0.40 -11.03 10.42 -148.98 -1.55 -12.58 16 21 C 0.10 2.27 2.94 30.63 0.09 2.36 16 22 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 23 C 0.14 2.56 6.22 86.38 0.54 3.10 16 24 N -0.37 -8.06 3.64 -352.05 -1.28 -9.34 16 25 C 0.26 5.22 12.63 180.36 2.28 7.50 16 26 N -0.58 -13.48 11.19 -204.01 -2.28 -15.76 16 27 C 0.19 4.07 13.03 180.76 2.36 6.43 16 28 N -0.35 -8.30 12.53 -61.25 -0.77 -9.06 16 29 C 0.01 0.34 4.44 86.31 0.38 0.72 16 30 H 0.07 1.57 7.96 -2.39 -0.02 1.55 16 31 H 0.05 1.25 6.26 -2.39 -0.01 1.23 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 1.84 5.83 -2.39 -0.01 1.83 16 35 H 0.07 1.89 7.89 -2.38 -0.02 1.87 16 36 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 37 H 0.02 1.14 7.89 -2.39 -0.02 1.12 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.10 2.40 6.05 -2.39 -0.01 2.39 16 40 H 0.05 1.72 5.59 -2.39 -0.01 1.71 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.12 2.07 8.09 -2.38 -0.02 2.06 16 44 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.25 2.96 8.06 -2.91 -0.02 2.94 16 46 H 0.24 3.23 8.06 -2.91 -0.02 3.21 16 47 H 0.04 1.31 5.87 -2.39 -0.01 1.30 16 48 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -80.08 383.47 0.96 -79.12 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.97 Total: 18.69 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 10.24 Total: 28.78 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -10.68 Total: -132.47 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.59 Total: -40.45 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -80.08 0.96 -79.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330649752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.492 kcal (2) G-P(sol) polarization free energy of solvation -80.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds