Wall clock time and date at job start Tue Mar 31 2020 20:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47696 * 2 1 4 4 C 1.50703 * 109.46985 * 239.99812 * 2 1 3 5 5 O 1.21279 * 120.00049 * 240.00315 * 4 2 1 6 6 N 1.34779 * 119.99541 * 60.00319 * 4 2 1 7 7 C 1.46499 * 120.00212 * 359.97438 * 6 4 2 8 8 C 1.46502 * 119.99726 * 179.97438 * 6 4 2 9 9 C 1.50691 * 109.47318 * 269.99867 * 8 6 4 10 10 H 1.08001 * 119.99896 * 0.02562 * 9 8 6 11 11 C 1.37874 * 120.00413 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99924 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47134 * 90.00496 * 13 11 9 15 15 H 1.48501 * 109.47070 * 210.00146 * 13 11 9 16 16 H 1.48493 * 109.47176 * 330.00076 * 13 11 9 17 17 N 1.46902 * 109.47133 * 120.00132 * 2 1 3 18 18 C 1.47017 * 111.00007 * 58.63473 * 17 2 1 19 19 C 1.53100 * 109.26147 * 177.60874 * 18 17 2 20 20 O 1.43017 * 109.25470 * 56.84395 * 19 18 17 21 21 C 1.43013 * 113.74064 * 301.33151 * 20 19 18 22 22 H 1.09006 * 109.50867 * 298.73448 * 21 20 19 23 23 C 1.53005 * 109.54433 * 178.63178 * 21 20 19 24 24 N 1.46496 * 109.47083 * 65.19239 * 23 21 20 25 25 C 1.34424 * 126.82190 * 124.71289 * 24 23 21 26 26 N 1.30837 * 108.07857 * 179.89149 * 25 24 23 27 27 C 1.33236 * 109.82855 * 0.38274 * 26 25 24 28 28 N 1.30714 * 108.94534 * 359.76109 * 27 26 25 29 29 C 1.47014 * 111.00002 * 294.99949 * 17 2 1 30 30 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46607 * 299.99997 * 1 2 3 32 32 H 1.08991 * 109.46868 * 59.99326 * 1 2 3 33 33 H 1.09002 * 109.47391 * 270.00122 * 7 6 4 34 34 H 1.09001 * 109.46813 * 150.00179 * 7 6 4 35 35 H 1.09004 * 109.47041 * 30.00306 * 7 6 4 36 36 H 1.09002 * 109.47278 * 30.00038 * 8 6 4 37 37 H 1.09006 * 109.46998 * 149.99560 * 8 6 4 38 38 H 0.96995 * 120.00442 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.50442 * 297.53896 * 18 17 2 40 40 H 1.08998 * 109.50893 * 57.67189 * 18 17 2 41 41 H 1.08998 * 109.50069 * 296.91583 * 19 18 17 42 42 H 1.08997 * 109.54462 * 176.80074 * 19 18 17 43 43 H 1.08996 * 109.47418 * 185.20071 * 23 21 20 44 44 H 1.09001 * 109.46431 * 305.19655 * 23 21 20 45 45 H 1.08006 * 125.96314 * 0.04280 * 25 24 23 46 46 H 1.07995 * 125.52800 * 179.79393 * 27 26 25 47 47 H 1.09000 * 109.50598 * 302.32380 * 29 17 2 48 48 H 1.08991 * 109.50663 * 62.45987 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8641 0.9409 -2.5889 8 6 2.1955 -0.9402 -3.6508 9 6 3.5228 -0.3563 -4.0607 10 1 3.9589 0.4483 -3.4873 11 6 4.1809 -0.8498 -5.1671 12 7 3.6501 -1.8299 -5.8651 13 14 5.8266 -0.1263 -5.6748 14 1 6.9225 -0.8679 -5.0008 15 1 5.9844 -0.2402 -7.1470 16 1 5.8813 1.3043 -5.2804 17 7 2.0197 -0.6925 1.1994 18 6 1.5218 -2.0749 1.2498 19 6 2.1026 -2.7764 2.4805 20 8 1.7582 -2.0336 3.6531 21 6 2.2281 -0.6830 3.6379 22 1 3.3167 -0.6769 3.5811 23 6 1.7794 0.0295 4.9154 24 7 2.4294 -0.5889 6.0735 25 6 3.1761 0.0303 7.0041 26 7 3.5719 -0.8671 7.8701 27 6 3.1067 -2.0663 7.5227 28 7 2.4012 -1.9473 6.4288 29 6 1.6485 0.0397 2.4190 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.1838 0.6427 -2.6224 34 1 1.1218 1.4665 -3.5084 35 1 1.0273 1.5997 -1.7359 36 1 2.3169 -2.0015 -3.4337 37 1 1.4775 -0.8150 -4.4613 38 1 4.1129 -2.1769 -6.6437 39 1 0.4337 -2.0677 1.3148 40 1 1.8298 -2.6058 0.3491 41 1 3.1875 -2.8311 2.3900 42 1 1.6921 -3.7834 2.5539 43 1 2.0577 1.0820 4.8614 44 1 0.6975 -0.0553 5.0177 45 1 3.4070 1.0850 7.0333 46 1 3.2835 -2.9873 8.0584 47 1 2.0490 1.0523 2.3717 48 1 0.5625 0.0806 2.5026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330649753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:09 Heat of formation + Delta-G solvation = 46.341785 kcal Electronic energy + Delta-G solvation = -30071.392376 eV Core-core repulsion = 25971.929445 eV Total energy + Delta-G solvation = -4099.462931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22191 -40.38498 -38.83746 -36.04521 -34.96582 -34.76167 -32.75469 -31.55499 -31.30515 -30.89116 -28.08339 -27.48801 -26.37603 -25.65345 -23.99603 -23.60316 -22.30749 -22.12754 -21.43936 -20.21461 -18.51839 -17.64224 -16.92368 -16.58465 -16.43279 -16.28893 -15.53003 -15.47705 -15.36349 -15.02212 -14.75883 -14.60745 -14.44438 -14.08772 -13.94211 -13.65323 -13.39073 -13.23312 -12.89015 -12.61524 -12.39785 -12.24605 -12.16936 -11.83620 -11.80098 -11.42580 -11.25737 -11.17396 -11.14975 -10.90041 -10.61478 -10.57488 -10.18534 -10.17869 -9.95587 -9.87790 -9.75756 -9.64010 -8.83272 -8.46668 -8.28055 -7.68364 -6.07663 -4.12486 1.45220 2.04820 2.79605 3.29133 3.30698 3.35626 3.38945 3.44739 3.50753 4.00902 4.09036 4.15562 4.42152 4.50261 4.66620 4.67092 4.75968 4.85382 4.98948 5.02778 5.07762 5.10435 5.19921 5.22571 5.26961 5.38163 5.44246 5.47018 5.63195 5.66716 5.69115 5.83636 5.89238 6.02635 6.05263 6.10357 6.21291 6.26139 6.54945 6.80448 6.92064 7.05169 7.11798 7.38899 7.48732 7.88573 7.89612 8.19235 8.35007 8.86469 9.04568 9.52838 11.00418 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.002403 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.368893 B =11650.314488 C =12158.004129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.065 3.935 3 H 0.103 0.897 4 C 0.512 3.488 5 O -0.524 6.524 6 N -0.601 5.601 7 C 0.081 3.919 8 C 0.247 3.753 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.509 5.509 18 C 0.004 3.996 19 C 0.069 3.931 20 O -0.363 6.363 21 C 0.085 3.915 22 H 0.071 0.929 23 C 0.138 3.862 24 N -0.375 5.375 25 C 0.245 3.755 26 N -0.549 5.549 27 C 0.183 3.817 28 N -0.285 5.285 29 C 0.024 3.976 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.039 0.961 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.217 0.783 46 H 0.214 0.786 47 H 0.086 0.914 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 7.474 21.134 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.047 4.047 3 H 0.121 0.879 4 C 0.297 3.703 5 O -0.400 6.400 6 N -0.333 5.333 7 C -0.063 4.063 8 C 0.128 3.872 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.233 5.233 18 C -0.123 4.123 19 C -0.008 4.008 20 O -0.282 6.282 21 C 0.026 3.974 22 H 0.089 0.911 23 C 0.015 3.985 24 N -0.166 5.166 25 C -0.051 4.051 26 N -0.277 5.277 27 C -0.120 4.120 28 N -0.111 5.111 29 C -0.106 4.106 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.137 0.863 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.116 0.884 45 H 0.233 0.767 46 H 0.230 0.770 47 H 0.104 0.896 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.876 6.219 20.986 23.262 hybrid contribution 0.185 0.925 -0.764 1.214 sum -7.691 7.144 20.222 22.784 Atomic orbital electron populations 1.22653 0.95822 1.03364 1.03532 1.21669 0.93934 0.98931 0.90185 0.87898 1.19984 0.81121 0.85209 0.83949 1.90599 1.37230 1.26531 1.85663 1.48127 1.49678 1.28271 1.07250 1.21789 0.93733 0.88210 1.02526 1.19286 0.94233 0.93670 0.80038 1.21410 1.04797 1.19090 1.11169 0.92492 1.24936 0.97955 0.94963 0.96262 1.69927 1.38972 1.26092 1.18402 0.86494 0.84015 0.79394 0.77493 1.20516 1.21144 1.19950 1.62062 1.59013 1.02162 1.00055 1.23168 0.97408 0.89858 1.01896 1.22653 1.00143 0.94722 0.83233 1.88098 1.77945 1.21738 1.40388 1.22252 0.98965 0.84240 0.91988 0.91075 1.21862 0.99038 0.96164 0.81439 1.50465 1.38664 1.06093 1.21368 1.26079 0.92064 1.00537 0.86464 1.70512 1.27979 1.00001 1.29160 1.26082 0.95344 0.97317 0.93215 1.78349 1.23388 0.93398 1.16001 1.22721 0.99209 0.98296 0.90335 0.91803 0.92011 0.89955 0.93478 0.90743 0.92422 0.93872 0.95008 0.92695 0.94319 0.86311 0.92305 0.88411 0.86520 0.88444 0.76678 0.76951 0.89585 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 8.12 37.16 0.30 -1.86 16 2 C 0.06 0.91 1.97 -68.86 -0.14 0.77 16 3 H 0.10 1.30 7.38 -51.93 -0.38 0.91 16 4 C 0.51 10.11 6.78 -10.98 -0.07 10.03 16 5 O -0.52 -12.59 13.51 5.56 0.08 -12.52 16 6 N -0.60 -12.14 2.86 -182.95 -0.52 -12.66 16 7 C 0.08 1.19 8.80 59.85 0.53 1.72 16 8 C 0.25 6.30 5.16 -5.20 -0.03 6.27 16 9 C -0.53 -14.70 9.38 -34.45 -0.32 -15.02 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 13 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 N -0.51 -7.04 4.50 -227.71 -1.03 -8.06 16 18 C 0.00 0.06 4.75 -3.71 -0.02 0.04 16 19 C 0.07 0.92 7.01 37.21 0.26 1.18 16 20 O -0.36 -4.67 9.58 -35.23 -0.34 -5.01 16 21 C 0.09 0.86 3.02 -26.68 -0.08 0.78 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 C 0.14 0.95 6.25 -4.04 -0.03 0.93 16 24 N -0.37 -3.56 3.69 -62.63 -0.23 -3.79 16 25 C 0.25 2.01 12.63 -90.65 -1.14 0.86 16 26 N -0.55 -5.94 11.19 -15.83 -0.18 -6.12 16 27 C 0.18 1.97 13.03 -91.82 -1.20 0.77 16 28 N -0.28 -3.48 11.76 29.29 0.34 -3.14 16 29 C 0.02 0.23 4.59 -3.71 -0.02 0.21 16 30 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 31 H 0.06 0.55 6.58 -51.93 -0.34 0.21 16 32 H 0.08 0.85 4.53 -51.93 -0.24 0.62 16 33 H 0.05 0.59 6.95 -51.93 -0.36 0.22 16 34 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.06 0.68 6.01 -51.93 -0.31 0.36 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.04 0.52 6.42 -51.93 -0.33 0.19 16 40 H 0.12 2.11 5.43 -51.93 -0.28 1.83 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.12 0.33 8.09 -51.93 -0.42 -0.09 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.22 0.72 8.06 -52.48 -0.42 0.29 16 46 H 0.21 1.59 8.06 -52.49 -0.42 1.16 16 47 H 0.09 0.66 8.13 -51.93 -0.42 0.23 16 48 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -37.00 379.08 -9.57 -46.56 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.07 Total: -0.39 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -2.05 Total: 8.31 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.88 Total: -59.39 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.26 Total: -17.52 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.00 -9.57 -46.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330649753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.903 kcal (2) G-P(sol) polarization free energy of solvation -36.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds