Wall clock time and date at job start Tue Mar 31 2020 20:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47696 * 2 1 4 4 C 1.50703 * 109.46985 * 239.99812 * 2 1 3 5 5 O 1.21279 * 120.00049 * 240.00315 * 4 2 1 6 6 N 1.34779 * 119.99541 * 60.00319 * 4 2 1 7 7 C 1.46499 * 120.00212 * 359.97438 * 6 4 2 8 8 C 1.46502 * 119.99726 * 179.97438 * 6 4 2 9 9 C 1.50691 * 109.47318 * 269.99867 * 8 6 4 10 10 H 1.08001 * 119.99896 * 0.02562 * 9 8 6 11 11 C 1.37874 * 120.00413 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99924 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00255 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47134 * 90.00496 * 13 11 9 15 15 H 1.48501 * 109.47070 * 210.00146 * 13 11 9 16 16 H 1.48493 * 109.47176 * 330.00076 * 13 11 9 17 17 N 1.46902 * 109.47133 * 120.00132 * 2 1 3 18 18 C 1.47017 * 111.00007 * 58.63473 * 17 2 1 19 19 C 1.53100 * 109.26147 * 177.60874 * 18 17 2 20 20 O 1.43017 * 109.25470 * 56.84395 * 19 18 17 21 21 C 1.43013 * 113.74064 * 301.33151 * 20 19 18 22 22 H 1.09006 * 109.50867 * 298.73448 * 21 20 19 23 23 C 1.53005 * 109.54433 * 178.63178 * 21 20 19 24 24 N 1.46496 * 109.47083 * 65.19239 * 23 21 20 25 25 C 1.34424 * 126.82190 * 124.71289 * 24 23 21 26 26 N 1.30837 * 108.07857 * 179.89149 * 25 24 23 27 27 C 1.33236 * 109.82855 * 0.38274 * 26 25 24 28 28 N 1.30714 * 108.94534 * 359.76109 * 27 26 25 29 29 C 1.47014 * 111.00002 * 294.99949 * 17 2 1 30 30 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46607 * 299.99997 * 1 2 3 32 32 H 1.08991 * 109.46868 * 59.99326 * 1 2 3 33 33 H 1.09002 * 109.47391 * 270.00122 * 7 6 4 34 34 H 1.09001 * 109.46813 * 150.00179 * 7 6 4 35 35 H 1.09004 * 109.47041 * 30.00306 * 7 6 4 36 36 H 1.09002 * 109.47278 * 30.00038 * 8 6 4 37 37 H 1.09006 * 109.46998 * 149.99560 * 8 6 4 38 38 H 0.96995 * 120.00442 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.50442 * 297.53896 * 18 17 2 40 40 H 1.08998 * 109.50893 * 57.67189 * 18 17 2 41 41 H 1.08998 * 109.50069 * 296.91583 * 19 18 17 42 42 H 1.08997 * 109.54462 * 176.80074 * 19 18 17 43 43 H 1.08996 * 109.47418 * 185.20071 * 23 21 20 44 44 H 1.09001 * 109.46431 * 305.19655 * 23 21 20 45 45 H 1.08006 * 125.96314 * 0.04280 * 25 24 23 46 46 H 1.07995 * 125.52800 * 179.79393 * 27 26 25 47 47 H 1.09000 * 109.50598 * 302.32380 * 29 17 2 48 48 H 1.08991 * 109.50663 * 62.45987 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8641 0.9409 -2.5889 8 6 2.1955 -0.9402 -3.6508 9 6 3.5228 -0.3563 -4.0607 10 1 3.9589 0.4483 -3.4873 11 6 4.1809 -0.8498 -5.1671 12 7 3.6501 -1.8299 -5.8651 13 14 5.8266 -0.1263 -5.6748 14 1 6.9225 -0.8679 -5.0008 15 1 5.9844 -0.2402 -7.1470 16 1 5.8813 1.3043 -5.2804 17 7 2.0197 -0.6925 1.1994 18 6 1.5218 -2.0749 1.2498 19 6 2.1026 -2.7764 2.4805 20 8 1.7582 -2.0336 3.6531 21 6 2.2281 -0.6830 3.6379 22 1 3.3167 -0.6769 3.5811 23 6 1.7794 0.0295 4.9154 24 7 2.4294 -0.5889 6.0735 25 6 3.1761 0.0303 7.0041 26 7 3.5719 -0.8671 7.8701 27 6 3.1067 -2.0663 7.5227 28 7 2.4012 -1.9473 6.4288 29 6 1.6485 0.0397 2.4190 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.1838 0.6427 -2.6224 34 1 1.1218 1.4665 -3.5084 35 1 1.0273 1.5997 -1.7359 36 1 2.3169 -2.0015 -3.4337 37 1 1.4775 -0.8150 -4.4613 38 1 4.1129 -2.1769 -6.6437 39 1 0.4337 -2.0677 1.3148 40 1 1.8298 -2.6058 0.3491 41 1 3.1875 -2.8311 2.3900 42 1 1.6921 -3.7834 2.5539 43 1 2.0577 1.0820 4.8614 44 1 0.6975 -0.0553 5.0177 45 1 3.4070 1.0850 7.0333 46 1 3.2835 -2.9873 8.0584 47 1 2.0490 1.0523 2.3717 48 1 0.5625 0.0806 2.5026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330649753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:08 Heat of formation + Delta-G solvation = 19.591271 kcal Electronic energy + Delta-G solvation = -30072.552366 eV Core-core repulsion = 25971.929445 eV Total energy + Delta-G solvation = -4100.622920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.89823 -41.55295 -40.08260 -37.18656 -36.58285 -35.50120 -34.78675 -32.39254 -32.09045 -32.03509 -29.62009 -28.62505 -27.63046 -26.66190 -25.58093 -24.58285 -23.63372 -22.78004 -22.26007 -21.22039 -19.94278 -18.72225 -18.35553 -17.84432 -17.57742 -17.44266 -16.91774 -16.45764 -16.30270 -16.23928 -16.04002 -15.75410 -15.51729 -15.17166 -14.78640 -14.71159 -14.59219 -14.35671 -14.06163 -13.77536 -13.55085 -13.42118 -13.37646 -13.28900 -12.90652 -12.73127 -12.63705 -12.57218 -12.36039 -12.34125 -12.13751 -12.06673 -11.68437 -11.57773 -10.91502 -10.77312 -10.70317 -10.66211 -10.57532 -10.26234 -9.44375 -9.23760 -8.23426 -6.38138 0.80078 1.35242 1.38627 1.47729 1.48343 1.85188 2.09024 2.20943 2.39194 2.68791 2.85355 3.06171 3.47004 3.59808 3.64099 3.79976 3.91306 3.99677 4.03472 4.10687 4.11954 4.16669 4.23234 4.37578 4.46581 4.49015 4.54022 4.60227 4.62291 4.73327 4.77803 4.84187 4.89035 4.91820 5.00484 5.03098 5.21857 5.23209 5.36458 5.55397 5.55965 5.80439 5.86274 5.98222 6.00815 6.05496 6.19248 6.70129 6.81501 7.21287 7.28311 7.52326 8.83381 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.002403 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.368893 B =11650.314488 C =12158.004129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.079 3.921 3 H 0.130 0.870 4 C 0.498 3.502 5 O -0.581 6.581 6 N -0.609 5.609 7 C 0.075 3.925 8 C 0.262 3.738 9 C -0.539 4.539 10 H 0.053 0.947 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.283 1.283 15 H -0.275 1.275 16 H -0.260 1.260 17 N -0.534 5.534 18 C 0.015 3.985 19 C 0.077 3.923 20 O -0.374 6.374 21 C 0.081 3.919 22 H 0.049 0.951 23 C 0.139 3.861 24 N -0.381 5.381 25 C 0.256 3.744 26 N -0.582 5.582 27 C 0.176 3.824 28 N -0.331 5.331 29 C 0.028 3.972 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.097 0.903 36 H -0.006 1.006 37 H 0.023 0.977 38 H 0.267 0.733 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.103 0.897 43 H 0.169 0.831 44 H 0.105 0.895 45 H 0.264 0.736 46 H 0.230 0.770 47 H 0.119 0.881 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 11.472 22.791 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.033 4.033 3 H 0.148 0.852 4 C 0.287 3.713 5 O -0.461 6.461 6 N -0.341 5.341 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.578 4.578 10 H 0.071 0.929 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.209 1.209 15 H -0.200 1.200 16 H -0.184 1.184 17 N -0.259 5.259 18 C -0.113 4.113 19 C 0.000 4.000 20 O -0.292 6.292 21 C 0.021 3.979 22 H 0.067 0.933 23 C 0.018 3.982 24 N -0.172 5.172 25 C -0.040 4.040 26 N -0.310 5.310 27 C -0.126 4.126 28 N -0.158 5.158 29 C -0.100 4.100 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.013 0.987 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.121 0.879 43 H 0.186 0.814 44 H 0.123 0.877 45 H 0.280 0.720 46 H 0.246 0.754 47 H 0.137 0.863 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.727 10.272 22.655 26.361 hybrid contribution 0.431 -0.324 -1.248 1.359 sum -8.295 9.948 21.407 25.021 Atomic orbital electron populations 1.22616 0.93069 1.02986 1.05833 1.21597 0.95811 0.98713 0.87138 0.85229 1.21186 0.80077 0.84717 0.85340 1.90584 1.39747 1.29114 1.86630 1.48131 1.50321 1.29633 1.05996 1.22118 0.94103 0.86541 1.03877 1.18706 0.93670 0.91596 0.82027 1.21693 1.05849 1.19004 1.11236 0.92861 1.25864 1.01785 0.95306 0.96337 1.70048 1.40648 1.27314 1.18910 0.85433 0.78873 0.79132 0.77483 1.20912 1.19981 1.18382 1.61972 1.60116 1.02097 1.01676 1.22887 0.97773 0.90522 1.00127 1.22471 0.98581 0.95374 0.83547 1.88100 1.77957 1.23493 1.39688 1.22453 0.97895 0.83215 0.94291 0.93280 1.22173 0.99350 0.97901 0.78779 1.50603 1.39075 1.05316 1.22210 1.26993 0.90039 1.01951 0.84970 1.70519 1.29280 1.00499 1.30719 1.26493 0.94891 0.98233 0.93024 1.78262 1.24867 0.95668 1.17003 1.22844 1.00496 0.98962 0.87690 0.93573 0.88399 0.88852 0.90793 0.91686 0.88467 0.98747 0.95898 0.92454 0.93309 0.90585 0.94666 0.87901 0.81378 0.87713 0.72000 0.75397 0.86314 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 8.12 71.98 0.58 -2.87 16 2 C 0.08 2.02 1.97 44.17 0.09 2.11 16 3 H 0.13 2.66 7.38 -2.39 -0.02 2.65 16 4 C 0.50 19.95 6.78 87.66 0.59 20.54 16 5 O -0.58 -29.67 13.51 -3.02 -0.04 -29.71 16 6 N -0.61 -24.80 2.86 -851.12 -2.43 -27.23 16 7 C 0.08 2.04 8.80 127.77 1.12 3.16 16 8 C 0.26 13.99 5.16 85.63 0.44 14.43 16 9 C -0.54 -30.94 9.38 25.60 0.24 -30.70 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.34 5.46 84.65 0.46 0.80 16 12 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 13 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 17 N -0.53 -13.98 4.50 -874.35 -3.94 -17.91 16 18 C 0.01 0.44 4.75 86.31 0.41 0.85 16 19 C 0.08 2.15 7.01 72.02 0.50 2.66 16 20 O -0.37 -9.41 9.58 -148.98 -1.43 -10.84 16 21 C 0.08 1.44 3.02 30.63 0.09 1.53 16 22 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 23 C 0.14 1.39 6.25 86.38 0.54 1.92 16 24 N -0.38 -6.31 3.69 -352.06 -1.30 -7.61 16 25 C 0.26 3.44 12.63 180.36 2.28 5.72 16 26 N -0.58 -11.79 11.19 -204.00 -2.28 -14.07 16 27 C 0.18 3.73 13.03 180.77 2.36 6.08 16 28 N -0.33 -7.90 11.76 -61.25 -0.72 -8.62 16 29 C 0.03 0.43 4.59 86.31 0.40 0.83 16 30 H 0.05 1.04 6.43 -2.39 -0.02 1.02 16 31 H 0.10 1.16 6.58 -2.39 -0.02 1.14 16 32 H 0.09 1.53 4.53 -2.39 -0.01 1.52 16 33 H 0.07 1.62 6.95 -2.39 -0.02 1.60 16 34 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 35 H 0.10 1.85 6.01 -2.38 -0.01 1.84 16 36 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 37 H 0.02 1.24 8.07 -2.38 -0.02 1.22 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.05 1.30 6.42 -2.39 -0.02 1.28 16 40 H 0.08 2.93 5.43 -2.39 -0.01 2.92 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.17 -0.11 8.09 -2.39 -0.02 -0.13 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.26 0.45 8.06 -2.91 -0.02 0.43 16 46 H 0.23 3.47 8.06 -2.91 -0.02 3.44 16 47 H 0.12 1.11 8.13 -2.39 -0.02 1.09 16 48 H 0.07 0.84 6.56 -2.39 -0.02 0.82 16 Total: -1.00 -88.60 379.08 1.26 -87.34 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.97 Total: 10.73 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 10.11 Total: 27.07 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -10.39 Total: -131.59 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.47 Total: -40.55 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -88.60 1.26 -87.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330649753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.932 kcal (2) G-P(sol) polarization free energy of solvation -88.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds