Wall clock time and date at job start Tue Mar 31 2020 20:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47177 * 2 1 4 4 C 1.50701 * 109.47127 * 119.99786 * 2 1 3 5 5 O 1.21277 * 120.00045 * 95.54436 * 4 2 1 6 6 N 1.34778 * 120.00201 * 275.55095 * 4 2 1 7 7 C 1.46503 * 119.99747 * 359.97438 * 6 4 2 8 8 C 1.46495 * 120.00250 * 179.97438 * 6 4 2 9 9 C 1.50703 * 109.47158 * 89.99969 * 8 6 4 10 10 H 1.08000 * 119.99876 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00134 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99909 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00165 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46930 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47472 * 119.99621 * 13 11 9 16 16 H 1.48500 * 109.47118 * 239.99821 * 13 11 9 17 17 N 1.46900 * 109.47311 * 239.99407 * 2 1 3 18 18 C 1.47013 * 110.99635 * 52.47003 * 17 2 1 19 19 C 1.53096 * 109.25885 * 182.38946 * 18 17 2 20 20 O 1.43019 * 109.25912 * 303.15396 * 19 18 17 21 21 C 1.43016 * 113.73822 * 58.66708 * 20 19 18 22 22 H 1.08998 * 109.53700 * 61.28772 * 21 20 19 23 23 C 1.52996 * 109.50214 * 181.39561 * 21 20 19 24 24 N 1.46495 * 109.47338 * 294.78170 * 23 21 20 25 25 C 1.34427 * 126.82686 * 125.00758 * 24 23 21 26 26 N 1.30831 * 108.08418 * 180.20735 * 25 24 23 27 27 C 1.33245 * 109.82237 * 359.59723 * 26 25 24 28 28 N 1.30714 * 108.94826 * 0.40676 * 27 26 25 29 29 C 1.47014 * 110.99983 * 176.10181 * 17 2 1 30 30 H 1.09005 * 109.46687 * 60.00229 * 1 2 3 31 31 H 1.08994 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47562 * 300.00316 * 1 2 3 33 33 H 1.09008 * 109.46725 * 90.00173 * 7 6 4 34 34 H 1.08994 * 109.47097 * 210.00357 * 7 6 4 35 35 H 1.08997 * 109.47114 * 330.00695 * 7 6 4 36 36 H 1.08995 * 109.47214 * 209.99731 * 8 6 4 37 37 H 1.09002 * 109.47300 * 329.99873 * 8 6 4 38 38 H 0.97004 * 119.99543 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.51194 * 302.32817 * 18 17 2 40 40 H 1.09002 * 109.50555 * 62.41412 * 18 17 2 41 41 H 1.09008 * 109.50596 * 63.08583 * 19 18 17 42 42 H 1.08998 * 109.51289 * 183.17056 * 19 18 17 43 43 H 1.09003 * 109.46996 * 174.78580 * 23 21 20 44 44 H 1.09001 * 109.47555 * 54.78485 * 23 21 20 45 45 H 1.08005 * 125.95766 * 359.93876 * 25 24 23 46 46 H 1.08004 * 125.52492 * 180.12659 * 27 26 25 47 47 H 1.09000 * 109.50848 * 57.67790 * 29 17 2 48 48 H 1.09005 * 109.51026 * 297.54501 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3301 -1.8846 1.1737 6 7 2.1505 -0.0408 2.3942 7 6 1.7912 1.3779 2.4627 8 6 2.6383 -0.7314 3.5905 9 6 4.1391 -0.6141 3.6615 10 1 4.6759 -0.0789 2.8921 11 6 4.8269 -1.1908 4.7079 12 7 4.1733 -1.8429 5.6445 13 14 6.6872 -1.0448 4.7963 14 1 7.1785 -0.2671 3.6305 15 1 7.0702 -0.3505 6.0518 16 1 7.2917 -2.4010 4.7764 17 7 2.0197 -0.6926 -1.1993 18 6 1.4070 -0.1378 -2.4151 19 6 1.8981 -0.9254 -3.6326 20 8 3.3269 -0.8815 -3.6779 21 6 3.9566 -1.4146 -2.5097 22 1 3.6871 -2.4648 -2.3975 23 6 5.4753 -1.2885 -2.6454 24 7 5.9388 -2.1330 -3.7491 25 6 6.6687 -1.7448 -4.8091 26 7 6.8713 -2.7911 -5.5678 27 6 6.2961 -3.8625 -5.0231 28 7 5.7095 -3.5092 -3.9096 29 6 3.4863 -0.6319 -1.2808 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7375 1.4734 2.7251 34 1 2.4005 1.8708 3.2202 35 1 1.9680 1.8447 1.4938 36 1 2.1961 -0.2780 4.4775 37 1 2.3580 -1.7837 3.5422 38 1 4.6573 -2.2483 6.3810 39 1 0.3221 -0.2161 -2.3444 40 1 1.6902 0.9096 -2.5200 41 1 1.5681 -1.9613 -3.5533 42 1 1.4908 -0.4823 -4.5414 43 1 5.9507 -1.6090 -1.7184 44 1 5.7370 -0.2499 -2.8479 45 1 7.0222 -0.7428 -5.0030 46 1 6.3083 -4.8600 -5.4370 47 1 3.9193 -1.0711 -0.3821 48 1 3.8034 0.4073 -1.3680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330649754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:11 Heat of formation + Delta-G solvation = 37.367448 kcal Electronic energy + Delta-G solvation = -30447.511437 eV Core-core repulsion = 26347.659350 eV Total energy + Delta-G solvation = -4099.852087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09607 -40.26398 -38.82529 -36.06415 -34.84241 -34.62885 -32.72863 -31.67188 -31.25130 -31.01473 -28.14274 -27.87892 -25.95562 -25.42779 -24.51177 -23.18192 -22.16401 -22.05529 -21.16602 -20.45055 -18.42119 -17.47484 -16.93599 -16.67010 -16.62958 -16.41779 -15.74569 -15.38376 -15.23534 -15.01684 -14.63961 -14.51799 -14.27164 -14.19787 -13.89475 -13.74735 -13.26440 -13.06669 -12.90293 -12.39682 -12.33523 -12.21053 -11.98635 -11.92675 -11.82213 -11.53922 -11.44998 -11.26675 -11.20187 -10.90901 -10.71173 -10.60448 -10.21615 -10.13598 -9.89162 -9.79999 -9.70938 -9.66647 -8.91016 -8.49346 -8.31300 -7.69457 -6.09827 -4.15030 1.58670 2.18179 2.91412 3.24637 3.25472 3.33241 3.35766 3.42848 3.51973 3.98096 4.23037 4.33895 4.39328 4.63525 4.71793 4.77403 4.84955 4.87014 4.99545 5.02678 5.07680 5.12751 5.22110 5.24830 5.27880 5.31584 5.46117 5.56712 5.61528 5.65830 5.72448 5.83397 5.84624 5.87651 6.05624 6.13957 6.19778 6.36784 6.68218 6.76145 6.83473 6.98013 7.05357 7.39248 7.48284 7.86298 8.00870 8.17263 8.35794 8.84549 9.05923 9.50405 10.98271 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.003709 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.796727 B = 7547.398933 C = 9847.730091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 H 0.060 0.940 4 C 0.508 3.492 5 O -0.520 6.520 6 N -0.603 5.603 7 C 0.081 3.919 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.511 5.511 18 C 0.015 3.985 19 C 0.070 3.930 20 O -0.383 6.383 21 C 0.088 3.912 22 H 0.087 0.913 23 C 0.137 3.863 24 N -0.367 5.367 25 C 0.257 3.743 26 N -0.553 5.553 27 C 0.193 3.807 28 N -0.311 5.311 29 C 0.026 3.974 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.216 0.784 46 H 0.215 0.785 47 H 0.104 0.896 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 7.634 -18.444 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.078 0.922 4 C 0.293 3.707 5 O -0.395 6.395 6 N -0.336 5.336 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.236 5.236 18 C -0.114 4.114 19 C -0.007 4.007 20 O -0.302 6.302 21 C 0.029 3.971 22 H 0.105 0.895 23 C 0.014 3.986 24 N -0.158 5.158 25 C -0.040 4.040 26 N -0.280 5.280 27 C -0.110 4.110 28 N -0.139 5.139 29 C -0.102 4.102 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.232 0.768 46 H 0.231 0.769 47 H 0.122 0.878 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.849 6.033 -18.160 19.520 hybrid contribution 1.097 1.257 0.494 1.740 sum -2.753 7.290 -17.666 19.309 Atomic orbital electron populations 1.21806 0.92259 1.03611 1.02224 1.21736 0.97112 0.95930 0.90091 0.92233 1.20000 0.79263 0.87542 0.83893 1.90686 1.48913 1.15758 1.84133 1.48187 1.63936 1.10021 1.11467 1.21697 0.99658 0.83106 1.01821 1.19289 0.94188 0.93659 0.80176 1.21425 0.91904 1.34753 1.08434 0.92569 1.24932 0.98657 0.94946 0.95506 1.69939 1.35711 1.35321 1.12206 0.86468 0.85329 0.77948 0.77801 1.19896 1.20920 1.20814 1.61827 1.05572 1.55358 1.00842 1.22905 1.00895 0.97087 0.90465 1.22615 0.80518 1.00370 0.97233 1.87920 1.19332 1.83502 1.39476 1.22353 0.90561 0.99344 0.84871 0.89465 1.21895 0.93825 0.93938 0.88904 1.50368 1.39255 1.06723 1.19410 1.25983 0.93025 1.00367 0.84582 1.70520 1.27631 0.98521 1.31339 1.25966 0.94748 0.99525 0.90792 1.78094 1.24542 0.90294 1.20969 1.22731 0.88699 0.99044 0.99754 0.91777 0.90958 0.91349 0.93669 0.90710 0.92657 0.95027 0.93804 0.92709 0.88942 0.94047 0.92115 0.88479 0.87111 0.87264 0.76781 0.76900 0.87816 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.66 37.16 0.32 -1.33 16 2 C 0.06 0.90 1.79 -68.86 -0.12 0.78 16 3 H 0.06 0.77 6.08 -51.93 -0.32 0.46 16 4 C 0.51 10.10 5.95 -10.98 -0.07 10.04 16 5 O -0.52 -12.74 15.22 5.56 0.08 -12.65 16 6 N -0.60 -12.25 2.86 -182.95 -0.52 -12.78 16 7 C 0.08 1.22 9.86 59.85 0.59 1.81 16 8 C 0.25 6.27 5.16 -5.19 -0.03 6.25 16 9 C -0.53 -14.48 9.39 -34.44 -0.32 -14.81 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 13 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 N -0.51 -7.21 4.27 -227.72 -0.97 -8.18 16 18 C 0.01 0.15 5.14 -3.71 -0.02 0.13 16 19 C 0.07 0.74 7.01 37.21 0.26 1.00 16 20 O -0.38 -4.76 10.42 -35.23 -0.37 -5.13 16 21 C 0.09 1.13 2.94 -26.68 -0.08 1.05 16 22 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 23 C 0.14 1.47 6.22 -4.05 -0.03 1.45 16 24 N -0.37 -4.46 3.64 -62.63 -0.23 -4.69 16 25 C 0.26 2.72 12.63 -90.66 -1.14 1.58 16 26 N -0.55 -6.92 11.19 -15.83 -0.18 -7.10 16 27 C 0.19 2.37 13.03 -91.81 -1.20 1.17 16 28 N -0.31 -4.41 12.53 29.29 0.37 -4.05 16 29 C 0.03 0.37 4.64 -3.71 -0.02 0.35 16 30 H 0.06 0.57 6.27 -51.93 -0.33 0.25 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.75 7.57 -51.93 -0.39 0.35 16 33 H 0.04 0.58 7.96 -51.92 -0.41 0.16 16 34 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 35 H 0.05 0.68 5.86 -51.93 -0.30 0.37 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.09 0.84 6.06 -51.93 -0.31 0.53 16 40 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 45 H 0.22 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.21 1.85 8.06 -52.48 -0.42 1.42 16 47 H 0.10 1.81 6.54 -51.93 -0.34 1.47 16 48 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -36.28 389.33 -9.58 -45.86 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.40 Total: 0.82 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -1.94 Total: 11.10 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.80 Total: -62.21 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.28 Total: -17.78 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.28 -9.58 -45.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330649754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.225 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds