Wall clock time and date at job start Tue Mar 31 2020 20:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47177 * 2 1 4 4 C 1.50701 * 109.47127 * 119.99786 * 2 1 3 5 5 O 1.21277 * 120.00045 * 95.54436 * 4 2 1 6 6 N 1.34778 * 120.00201 * 275.55095 * 4 2 1 7 7 C 1.46503 * 119.99747 * 359.97438 * 6 4 2 8 8 C 1.46495 * 120.00250 * 179.97438 * 6 4 2 9 9 C 1.50703 * 109.47158 * 89.99969 * 8 6 4 10 10 H 1.08000 * 119.99876 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00134 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99909 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00165 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46930 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47472 * 119.99621 * 13 11 9 16 16 H 1.48500 * 109.47118 * 239.99821 * 13 11 9 17 17 N 1.46900 * 109.47311 * 239.99407 * 2 1 3 18 18 C 1.47013 * 110.99635 * 52.47003 * 17 2 1 19 19 C 1.53096 * 109.25885 * 182.38946 * 18 17 2 20 20 O 1.43019 * 109.25912 * 303.15396 * 19 18 17 21 21 C 1.43016 * 113.73822 * 58.66708 * 20 19 18 22 22 H 1.08998 * 109.53700 * 61.28772 * 21 20 19 23 23 C 1.52996 * 109.50214 * 181.39561 * 21 20 19 24 24 N 1.46495 * 109.47338 * 294.78170 * 23 21 20 25 25 C 1.34427 * 126.82686 * 125.00758 * 24 23 21 26 26 N 1.30831 * 108.08418 * 180.20735 * 25 24 23 27 27 C 1.33245 * 109.82237 * 359.59723 * 26 25 24 28 28 N 1.30714 * 108.94826 * 0.40676 * 27 26 25 29 29 C 1.47014 * 110.99983 * 176.10181 * 17 2 1 30 30 H 1.09005 * 109.46687 * 60.00229 * 1 2 3 31 31 H 1.08994 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47562 * 300.00316 * 1 2 3 33 33 H 1.09008 * 109.46725 * 90.00173 * 7 6 4 34 34 H 1.08994 * 109.47097 * 210.00357 * 7 6 4 35 35 H 1.08997 * 109.47114 * 330.00695 * 7 6 4 36 36 H 1.08995 * 109.47214 * 209.99731 * 8 6 4 37 37 H 1.09002 * 109.47300 * 329.99873 * 8 6 4 38 38 H 0.97004 * 119.99543 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.51194 * 302.32817 * 18 17 2 40 40 H 1.09002 * 109.50555 * 62.41412 * 18 17 2 41 41 H 1.09008 * 109.50596 * 63.08583 * 19 18 17 42 42 H 1.08998 * 109.51289 * 183.17056 * 19 18 17 43 43 H 1.09003 * 109.46996 * 174.78580 * 23 21 20 44 44 H 1.09001 * 109.47555 * 54.78485 * 23 21 20 45 45 H 1.08005 * 125.95766 * 359.93876 * 25 24 23 46 46 H 1.08004 * 125.52492 * 180.12659 * 27 26 25 47 47 H 1.09000 * 109.50848 * 57.67790 * 29 17 2 48 48 H 1.09005 * 109.51026 * 297.54501 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3301 -1.8846 1.1737 6 7 2.1505 -0.0408 2.3942 7 6 1.7912 1.3779 2.4627 8 6 2.6383 -0.7314 3.5905 9 6 4.1391 -0.6141 3.6615 10 1 4.6759 -0.0789 2.8921 11 6 4.8269 -1.1908 4.7079 12 7 4.1733 -1.8429 5.6445 13 14 6.6872 -1.0448 4.7963 14 1 7.1785 -0.2671 3.6305 15 1 7.0702 -0.3505 6.0518 16 1 7.2917 -2.4010 4.7764 17 7 2.0197 -0.6926 -1.1993 18 6 1.4070 -0.1378 -2.4151 19 6 1.8981 -0.9254 -3.6326 20 8 3.3269 -0.8815 -3.6779 21 6 3.9566 -1.4146 -2.5097 22 1 3.6871 -2.4648 -2.3975 23 6 5.4753 -1.2885 -2.6454 24 7 5.9388 -2.1330 -3.7491 25 6 6.6687 -1.7448 -4.8091 26 7 6.8713 -2.7911 -5.5678 27 6 6.2961 -3.8625 -5.0231 28 7 5.7095 -3.5092 -3.9096 29 6 3.4863 -0.6319 -1.2808 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7375 1.4734 2.7251 34 1 2.4005 1.8708 3.2202 35 1 1.9680 1.8447 1.4938 36 1 2.1961 -0.2780 4.4775 37 1 2.3580 -1.7837 3.5422 38 1 4.6573 -2.2483 6.3810 39 1 0.3221 -0.2161 -2.3444 40 1 1.6902 0.9096 -2.5200 41 1 1.5681 -1.9613 -3.5533 42 1 1.4908 -0.4823 -4.5414 43 1 5.9507 -1.6090 -1.7184 44 1 5.7370 -0.2499 -2.8479 45 1 7.0222 -0.7428 -5.0030 46 1 6.3083 -4.8600 -5.4370 47 1 3.9193 -1.0711 -0.3821 48 1 3.8034 0.4073 -1.3680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330649754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:10 Heat of formation + Delta-G solvation = 11.667051 kcal Electronic energy + Delta-G solvation = -30448.625890 eV Core-core repulsion = 26347.659350 eV Total energy + Delta-G solvation = -4100.966540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97838 -41.44429 -40.13993 -37.21853 -36.51079 -35.55173 -34.75326 -32.70471 -32.18794 -32.04786 -29.72183 -29.04475 -27.38610 -26.39030 -25.97346 -24.51408 -23.37312 -22.91573 -22.23555 -21.44746 -19.86296 -18.71610 -18.36335 -18.17855 -17.70608 -17.59562 -16.95044 -16.66968 -16.37405 -16.21282 -15.93917 -15.78028 -15.39501 -15.15049 -15.05962 -14.85772 -14.49102 -14.30098 -13.96366 -13.92937 -13.49812 -13.46438 -13.36741 -13.16368 -12.94482 -12.86931 -12.79654 -12.63076 -12.50860 -12.36230 -12.24579 -12.21868 -11.69737 -11.59287 -11.05907 -10.84498 -10.76087 -10.66898 -10.63389 -10.43684 -9.42293 -9.34645 -8.23937 -6.38770 0.72807 1.34287 1.34936 1.37057 1.47816 1.81446 2.03230 2.20260 2.37310 2.53551 2.74694 3.06065 3.45801 3.52809 3.62341 3.76169 3.80278 3.86234 3.94335 3.99598 4.08833 4.13066 4.21713 4.34726 4.37934 4.44262 4.47984 4.58166 4.63937 4.71825 4.72768 4.77676 4.88232 4.92554 4.93563 5.00495 5.21736 5.21984 5.26302 5.49384 5.54574 5.73404 5.83743 5.91098 5.92907 6.04323 6.04685 6.69533 6.79822 7.12916 7.27775 7.51767 8.83353 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.003709 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.796727 B = 7547.398933 C = 9847.730091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.077 3.923 3 H 0.087 0.913 4 C 0.500 3.500 5 O -0.581 6.581 6 N -0.611 5.611 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.538 4.538 10 H 0.055 0.945 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.285 1.285 17 N -0.538 5.538 18 C 0.019 3.981 19 C 0.065 3.935 20 O -0.385 6.385 21 C 0.101 3.899 22 H 0.045 0.955 23 C 0.137 3.863 24 N -0.376 5.376 25 C 0.267 3.733 26 N -0.577 5.577 27 C 0.192 3.808 28 N -0.360 5.360 29 C 0.034 3.966 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.023 0.977 37 H -0.006 1.006 38 H 0.266 0.734 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.129 0.871 43 H 0.101 0.899 44 H 0.149 0.851 45 H 0.261 0.739 46 H 0.238 0.762 47 H 0.059 0.941 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 11.125 -20.692 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 H 0.104 0.896 4 C 0.288 3.712 5 O -0.460 6.460 6 N -0.343 5.343 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.577 4.577 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.186 1.186 15 H -0.194 1.194 16 H -0.211 1.211 17 N -0.264 5.264 18 C -0.107 4.107 19 C -0.012 4.012 20 O -0.304 6.304 21 C 0.041 3.959 22 H 0.063 0.937 23 C 0.015 3.985 24 N -0.166 5.166 25 C -0.029 4.029 26 N -0.305 5.305 27 C -0.111 4.111 28 N -0.188 5.188 29 C -0.095 4.095 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.041 0.959 37 H 0.012 0.988 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.167 0.833 45 H 0.276 0.724 46 H 0.254 0.746 47 H 0.078 0.922 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.677 9.583 -20.425 22.859 hybrid contribution 0.962 0.145 1.163 1.517 sum -2.714 9.727 -19.261 21.748 Atomic orbital electron populations 1.21844 0.89873 1.03016 1.04691 1.21663 0.98680 0.95867 0.87226 0.89560 1.21107 0.77857 0.87100 0.85155 1.90652 1.51424 1.18729 1.85192 1.48200 1.63694 1.12193 1.10181 1.21997 1.01111 0.79684 1.03795 1.18723 0.93595 0.91473 0.82294 1.21702 0.92984 1.34641 1.08327 0.92673 1.25858 1.03759 0.94448 0.95115 1.70064 1.37757 1.36204 1.12904 0.85399 0.79147 0.77851 0.78619 1.18647 1.19443 1.21141 1.61741 1.05704 1.56852 1.02132 1.22994 1.01678 0.97774 0.88289 1.22823 0.79676 0.99802 0.98885 1.87915 1.20400 1.83092 1.38952 1.22063 0.92064 0.96827 0.84912 0.93653 1.21996 0.92161 0.95743 0.88580 1.50413 1.39847 1.06163 1.20155 1.26885 0.91250 1.01593 0.83171 1.70557 1.28535 0.99133 1.32246 1.26507 0.93746 1.00647 0.90209 1.78048 1.26351 0.92026 1.22359 1.22555 0.88946 0.99858 0.98147 0.87846 0.93143 0.90302 0.90936 0.91464 0.89043 0.95930 0.98815 0.92476 0.87051 0.91950 0.94037 0.85278 0.88077 0.83315 0.72389 0.74619 0.92244 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.66 71.98 0.62 -2.17 16 2 C 0.08 2.06 1.79 44.17 0.08 2.14 16 3 H 0.09 1.86 6.08 -2.39 -0.01 1.85 16 4 C 0.50 20.28 5.95 87.66 0.52 20.80 16 5 O -0.58 -30.37 15.22 -3.02 -0.05 -30.42 16 6 N -0.61 -25.12 2.86 -851.13 -2.43 -27.55 16 7 C 0.08 2.12 9.86 127.77 1.26 3.38 16 8 C 0.26 13.96 5.16 85.64 0.44 14.40 16 9 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 10 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 11 C 0.01 0.40 5.46 84.65 0.46 0.87 16 12 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 13 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 17 N -0.54 -14.55 4.27 -874.38 -3.74 -18.29 16 18 C 0.02 0.35 5.14 86.31 0.44 0.79 16 19 C 0.06 1.22 7.01 72.01 0.50 1.73 16 20 O -0.38 -8.85 10.42 -148.98 -1.55 -10.41 16 21 C 0.10 2.60 2.94 30.63 0.09 2.69 16 22 H 0.05 1.54 8.09 -2.39 -0.02 1.52 16 23 C 0.14 2.84 6.22 86.38 0.54 3.38 16 24 N -0.38 -8.87 3.64 -352.07 -1.28 -10.15 16 25 C 0.27 5.09 12.63 180.36 2.28 7.37 16 26 N -0.58 -13.74 11.19 -203.99 -2.28 -16.03 16 27 C 0.19 4.68 13.03 180.76 2.36 7.04 16 28 N -0.36 -10.44 12.53 -61.24 -0.77 -11.21 16 29 C 0.03 0.94 4.64 86.31 0.40 1.34 16 30 H 0.10 1.33 6.27 -2.38 -0.01 1.31 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.46 7.57 -2.39 -0.02 1.44 16 33 H 0.07 1.64 7.96 -2.38 -0.02 1.62 16 34 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.09 1.87 5.86 -2.39 -0.01 1.86 16 36 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 37 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 38 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 39 H 0.11 1.56 6.06 -2.39 -0.01 1.54 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.15 1.83 8.09 -2.39 -0.02 1.81 16 45 H 0.26 2.09 8.06 -2.91 -0.02 2.07 16 46 H 0.24 4.06 8.06 -2.91 -0.02 4.04 16 47 H 0.06 2.18 6.54 -2.39 -0.02 2.17 16 48 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -86.13 389.33 1.41 -84.73 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.96 Total: 15.43 kcal Atomic # 6 Polarization: 23.22 SS G_CDS: 10.24 Total: 33.46 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -10.22 Total: -139.21 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.60 Total: -40.83 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -86.13 1.41 -84.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330649754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.394 kcal (2) G-P(sol) polarization free energy of solvation -86.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds