Wall clock time and date at job start Tue Mar 31 2020 20:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46791 * 2 1 4 4 C 1.50694 * 109.47143 * 120.00094 * 2 1 3 5 5 O 1.21281 * 120.00085 * 91.73038 * 4 2 1 6 6 N 1.34782 * 119.99702 * 271.73426 * 4 2 1 7 7 C 1.46489 * 120.00351 * 4.63339 * 6 4 2 8 8 C 1.46508 * 119.99620 * 184.63765 * 6 4 2 9 9 C 1.50697 * 109.47064 * 269.99879 * 8 6 4 10 10 H 1.08008 * 120.00010 * 359.97438 * 9 8 6 11 11 C 1.37871 * 119.99953 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00171 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00176 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46966 * 270.00344 * 13 11 9 15 15 H 1.48501 * 109.47236 * 29.99870 * 13 11 9 16 16 H 1.48500 * 109.47543 * 150.00080 * 13 11 9 17 17 N 1.46898 * 109.47053 * 240.00017 * 2 1 3 18 18 C 1.47006 * 111.00043 * 311.19274 * 17 2 1 19 19 C 1.53105 * 109.26013 * 177.60683 * 18 17 2 20 20 O 1.43015 * 109.25619 * 56.84706 * 19 18 17 21 21 C 1.43010 * 113.74068 * 301.33365 * 20 19 18 22 22 H 1.09005 * 109.50884 * 298.73347 * 21 20 19 23 23 C 1.53006 * 109.50999 * 178.64723 * 21 20 19 24 24 N 1.46501 * 109.46764 * 64.99827 * 23 21 20 25 25 C 1.34428 * 126.82173 * 125.00345 * 24 23 21 26 26 N 1.30836 * 108.07923 * 179.97438 * 25 24 23 27 27 C 1.33243 * 109.82547 * 359.97438 * 26 25 24 28 28 N 1.30716 * 108.94806 * 359.75592 * 27 26 25 29 29 C 1.47016 * 111.00097 * 187.55592 * 17 2 1 30 30 H 1.09008 * 109.47031 * 66.49520 * 1 2 3 31 31 H 1.08992 * 109.47263 * 186.49486 * 1 2 3 32 32 H 1.08994 * 109.47195 * 306.49877 * 1 2 3 33 33 H 1.09003 * 109.47431 * 275.33152 * 7 6 4 34 34 H 1.09009 * 109.46955 * 35.32969 * 7 6 4 35 35 H 1.09002 * 109.47583 * 155.32600 * 7 6 4 36 36 H 1.09004 * 109.46714 * 149.99733 * 8 6 4 37 37 H 1.09000 * 109.46939 * 29.99777 * 8 6 4 38 38 H 0.96998 * 120.00213 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.50815 * 297.54069 * 18 17 2 40 40 H 1.08999 * 109.50910 * 57.67432 * 18 17 2 41 41 H 1.08999 * 109.50825 * 176.78148 * 19 18 17 42 42 H 1.09002 * 109.50310 * 296.87111 * 19 18 17 43 43 H 1.08999 * 109.47284 * 184.99631 * 23 21 20 44 44 H 1.08993 * 109.46805 * 305.00174 * 23 21 20 45 45 H 1.07999 * 125.96219 * 359.97438 * 25 24 23 46 46 H 1.07998 * 125.52655 * 179.97438 * 27 26 25 47 47 H 1.08998 * 109.50327 * 302.32912 * 29 17 2 48 48 H 1.09003 * 109.50512 * 62.45840 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2644 -1.9002 1.1914 6 7 2.2237 -0.0235 2.3742 7 6 1.8480 1.3903 2.4512 8 6 2.8075 -0.6909 3.5405 9 6 1.7079 -1.2891 4.3795 10 1 0.6772 -1.1824 4.0748 11 6 2.0175 -1.9716 5.5368 12 7 1.0579 -2.4933 6.2693 13 14 3.8000 -2.1556 6.0642 14 1 4.3647 -3.3966 5.4759 15 1 4.5799 -0.9840 5.5904 16 1 3.8727 -2.2324 7.5454 17 7 2.0197 -0.6925 -1.1994 18 6 1.3431 -1.9859 -1.3741 19 6 1.8386 -2.6448 -2.6643 20 8 3.2611 -2.7811 -2.6080 21 6 3.9522 -1.5405 -2.4390 22 1 3.7410 -0.8878 -3.2860 23 6 5.4577 -1.8011 -2.3578 24 7 5.9302 -2.3363 -3.6371 25 6 6.9211 -1.8432 -4.4000 26 7 7.0355 -2.6037 -5.4584 27 6 6.1393 -3.5883 -5.4064 28 7 5.4425 -3.4704 -4.3067 29 6 3.4781 -0.8704 -1.1466 30 1 -0.3633 0.4099 -0.9425 31 1 -0.3633 -1.0210 0.1162 32 1 -0.3633 0.6112 0.8261 33 1 2.6611 2.0040 2.0633 34 1 0.9495 1.5603 1.8578 35 1 1.6537 1.6587 3.4896 36 1 3.3635 0.0349 4.1339 37 1 3.4811 -1.4806 3.2077 38 1 1.2757 -2.9738 7.0833 39 1 1.5684 -2.6320 -0.5257 40 1 0.2664 -1.8280 -1.4364 41 1 1.3825 -3.6293 -2.7686 42 1 1.5652 -2.0246 -3.5179 43 1 5.9768 -0.8677 -2.1405 44 1 5.6594 -2.5220 -1.5656 45 1 7.5185 -0.9713 -4.1781 46 1 6.0117 -4.3608 -6.1503 47 1 3.9598 0.1018 -1.0428 48 1 3.7375 -1.4987 -0.2945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330650255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:13 Heat of formation + Delta-G solvation = 15.137020 kcal Electronic energy + Delta-G solvation = -30594.005280 eV Core-core repulsion = 26493.189209 eV Total energy + Delta-G solvation = -4100.816071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.92251 -41.75458 -39.95208 -37.20624 -36.43406 -35.50878 -34.74854 -32.71965 -32.11840 -32.03158 -30.28051 -29.02646 -27.45578 -26.33234 -25.66048 -24.40918 -23.19980 -22.79043 -22.18723 -21.61383 -19.88837 -19.17168 -18.32970 -18.14191 -17.73907 -17.53524 -16.85237 -16.58573 -16.31239 -16.20643 -15.90276 -15.82008 -15.45031 -15.27505 -14.95652 -14.80301 -14.62973 -14.27882 -13.95712 -13.76291 -13.70269 -13.51658 -13.32082 -13.24124 -12.97454 -12.89038 -12.68049 -12.50130 -12.41518 -12.22175 -12.05860 -11.95155 -11.78450 -11.66721 -11.15040 -10.92514 -10.86984 -10.71933 -10.64720 -10.54295 -9.42863 -9.23810 -8.37460 -6.42437 0.78991 1.28527 1.32817 1.40861 1.42055 1.69656 2.07724 2.26924 2.31304 2.64711 2.74387 2.97206 3.46687 3.57751 3.63552 3.76014 3.87610 3.96345 3.97789 4.10259 4.15100 4.19153 4.31998 4.35624 4.43156 4.48574 4.50951 4.53362 4.62272 4.68103 4.74697 4.83350 4.86383 4.89892 4.91591 4.95350 5.14800 5.19775 5.33398 5.42879 5.55163 5.60067 5.73376 5.79137 5.96273 6.20157 6.21264 6.59122 6.67466 7.18404 7.19513 7.38974 8.79652 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.003036 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.528206 B = 9220.195681 C =10171.330596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.138 0.862 4 C 0.472 3.528 5 O -0.584 6.584 6 N -0.604 5.604 7 C 0.072 3.928 8 C 0.225 3.775 9 C -0.532 4.532 10 H 0.026 0.974 11 C 0.008 3.992 12 N -0.947 5.947 13 Si 0.948 3.052 14 H -0.280 1.280 15 H -0.234 1.234 16 H -0.276 1.276 17 N -0.494 5.494 18 C -0.002 4.002 19 C 0.074 3.926 20 O -0.385 6.385 21 C 0.094 3.906 22 H 0.075 0.925 23 C 0.135 3.865 24 N -0.380 5.380 25 C 0.258 3.742 26 N -0.578 5.578 27 C 0.179 3.821 28 N -0.333 5.333 29 C 0.012 3.988 30 H 0.104 0.896 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.014 0.986 38 H 0.268 0.732 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.167 0.833 44 H 0.080 0.920 45 H 0.264 0.736 46 H 0.233 0.767 47 H 0.115 0.885 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 11.776 -21.015 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 H 0.155 0.845 4 C 0.260 3.740 5 O -0.465 6.465 6 N -0.335 5.335 7 C -0.070 4.070 8 C 0.102 3.898 9 C -0.571 4.571 10 H 0.044 0.956 11 C -0.189 4.189 12 N -0.587 5.587 13 Si 0.771 3.229 14 H -0.206 1.206 15 H -0.157 1.157 16 H -0.201 1.201 17 N -0.217 5.217 18 C -0.130 4.130 19 C -0.003 4.003 20 O -0.303 6.303 21 C 0.035 3.965 22 H 0.093 0.907 23 C 0.013 3.987 24 N -0.171 5.171 25 C -0.038 4.038 26 N -0.306 5.306 27 C -0.124 4.124 28 N -0.160 5.160 29 C -0.117 4.117 30 H 0.122 0.878 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.185 0.815 44 H 0.099 0.901 45 H 0.280 0.720 46 H 0.249 0.751 47 H 0.133 0.867 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.053 10.801 -21.264 25.173 hybrid contribution 0.109 -1.108 1.937 2.234 sum 8.163 9.693 -19.327 23.111 Atomic orbital electron populations 1.21856 0.91064 1.02148 1.04704 1.22074 0.98150 0.99545 0.84204 0.84453 1.22540 0.77770 0.87498 0.86180 1.90624 1.53610 1.17227 1.85070 1.48129 1.61063 1.12657 1.11700 1.22057 1.01729 0.79343 1.03856 1.19302 0.93135 0.93169 0.84176 1.21548 0.93519 1.34947 1.07094 0.95604 1.25883 1.02460 0.94328 0.96269 1.70053 1.34888 1.37608 1.16171 0.85714 0.79415 0.80003 0.77783 1.20602 1.15687 1.20075 1.62877 1.04622 1.20513 1.33668 1.23075 1.00211 0.90980 0.98779 1.22623 0.80680 1.01229 0.95756 1.88129 1.18731 1.29761 1.93724 1.22302 0.91296 0.86237 0.96635 0.90670 1.22086 0.93327 1.02118 0.81123 1.50527 1.27009 1.20387 1.19142 1.27002 0.90490 0.99827 0.86491 1.70540 1.27048 1.08414 1.24645 1.26539 0.91137 0.98586 0.96131 1.78301 1.23748 1.04343 1.09611 1.22902 0.89205 1.02283 0.97330 0.87777 0.94236 0.90592 0.89520 0.89625 0.91402 0.93158 0.96787 0.92333 0.94066 0.88631 0.88502 0.91637 0.81546 0.90150 0.72000 0.75091 0.86705 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.15 71.98 0.59 -2.58 16 2 C 0.07 1.79 2.17 44.17 0.10 1.88 16 3 H 0.14 2.44 7.03 -2.38 -0.02 2.42 16 4 C 0.47 17.42 5.80 87.65 0.51 17.92 16 5 O -0.58 -27.63 12.02 -3.03 -0.04 -27.67 16 6 N -0.60 -22.59 2.86 -851.12 -2.43 -25.02 16 7 C 0.07 1.80 9.62 127.77 1.23 3.03 16 8 C 0.22 10.52 4.17 85.63 0.36 10.88 16 9 C -0.53 -30.92 9.94 25.60 0.25 -30.67 16 10 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 11 C 0.01 0.49 5.47 84.65 0.46 0.95 16 12 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 13 Si 0.95 44.03 27.47 68.60 1.88 45.92 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.23 -9.54 6.54 99.48 0.65 -8.89 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 N -0.49 -12.02 4.81 -874.37 -4.21 -16.23 16 18 C 0.00 -0.07 4.76 86.32 0.41 0.34 16 19 C 0.07 1.88 7.01 72.02 0.50 2.39 16 20 O -0.38 -11.09 9.57 -148.98 -1.43 -12.52 16 21 C 0.09 2.01 3.03 30.63 0.09 2.10 16 22 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 23 C 0.14 2.25 6.25 86.38 0.54 2.79 16 24 N -0.38 -7.56 3.69 -352.06 -1.30 -8.86 16 25 C 0.26 3.95 12.63 180.36 2.28 6.22 16 26 N -0.58 -12.25 11.19 -204.00 -2.28 -14.53 16 27 C 0.18 3.96 13.03 180.76 2.36 6.32 16 28 N -0.33 -8.74 11.76 -61.24 -0.72 -9.46 16 29 C 0.01 0.27 4.43 86.31 0.38 0.65 16 30 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.10 6.69 -2.39 -0.02 1.09 16 32 H 0.08 1.62 6.63 -2.39 -0.02 1.60 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.72 5.52 -2.38 -0.01 1.70 16 35 H 0.07 1.87 8.03 -2.39 -0.02 1.85 16 36 H 0.05 2.14 7.13 -2.39 -0.02 2.13 16 37 H 0.01 0.71 6.92 -2.39 -0.02 0.70 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.04 1.59 5.61 -2.39 -0.01 1.57 16 40 H 0.10 2.41 6.19 -2.39 -0.01 2.40 16 41 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.17 0.98 8.09 -2.39 -0.02 0.96 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.26 0.95 8.06 -2.91 -0.02 0.92 16 46 H 0.23 3.62 8.06 -2.91 -0.02 3.59 16 47 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.03 1.09 5.91 -2.39 -0.01 1.08 16 Total: -1.00 -89.00 377.74 0.75 -88.25 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.91 Total: 17.56 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 10.06 Total: 22.24 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -10.64 Total: -133.78 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.46 Total: -40.19 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Total: -89.00 0.75 -88.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330650255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.383 kcal (2) G-P(sol) polarization free energy of solvation -88.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds