Wall clock time and date at job start Tue Mar 31 2020 19:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46748 * 2 1 4 4 O 1.42893 * 109.46913 * 119.99416 * 2 1 3 5 5 C 1.52999 * 109.47104 * 239.99649 * 2 1 3 6 6 N 1.46894 * 109.47115 * 179.97438 * 5 2 1 7 7 C 1.46907 * 111.00358 * 294.30410 * 6 5 2 8 8 C 1.53234 * 109.34177 * 172.74641 * 7 6 5 9 9 N 1.47082 * 108.52293 * 53.82950 * 8 7 6 10 10 C 1.34774 * 120.88381 * 128.79647 * 9 8 7 11 11 O 1.21589 * 120.00307 * 175.02695 * 10 9 8 12 12 N 1.34784 * 119.99590 * 355.02403 * 10 9 8 13 13 C 1.40191 * 119.99585 * 185.22395 * 12 10 9 14 14 C 1.40406 * 125.97703 * 359.97438 * 13 12 10 15 15 C 1.35240 * 107.86995 * 180.02562 * 14 13 12 16 16 N 1.34964 * 107.85919 * 359.97438 * 15 14 13 17 17 C 1.46503 * 125.97767 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47457 * 125.00042 * 17 16 15 19 19 H 1.08002 * 120.00114 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00370 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00557 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99524 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47120 * 90.00271 * 22 20 18 24 24 H 1.48502 * 109.46985 * 210.00148 * 22 20 18 25 25 H 1.48497 * 109.47323 * 330.00128 * 22 20 18 26 26 N 1.31215 * 125.96928 * 179.69388 * 13 12 10 27 27 C 1.47079 * 118.23305 * 308.81399 * 9 8 7 28 28 C 1.46897 * 111.00299 * 169.99988 * 6 5 2 29 29 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47052 * 300.00277 * 1 2 3 31 31 H 1.08996 * 109.46814 * 59.99807 * 1 2 3 32 32 H 0.96705 * 114.00335 * 60.00356 * 4 2 1 33 33 H 1.08999 * 109.46586 * 60.00107 * 5 2 1 34 34 H 1.08999 * 109.46949 * 300.00163 * 5 2 1 35 35 H 1.09004 * 109.48978 * 292.71026 * 7 6 5 36 36 H 1.08998 * 109.49085 * 52.78218 * 7 6 5 37 37 H 1.08997 * 109.62880 * 294.11927 * 8 7 6 38 38 H 1.09003 * 109.63010 * 173.53748 * 8 7 6 39 39 H 0.96997 * 119.99962 * 5.21519 * 12 10 9 40 40 H 1.07998 * 126.05886 * 0.02562 * 14 13 12 41 41 H 1.07998 * 126.07183 * 180.02562 * 15 14 13 42 42 H 1.09006 * 109.46587 * 244.99921 * 17 16 15 43 43 H 1.08997 * 109.46900 * 4.99421 * 17 16 15 44 44 H 0.96998 * 120.00657 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.63181 * 291.47099 * 27 9 8 46 46 H 1.09005 * 109.62125 * 170.89495 * 27 9 8 47 47 H 1.08999 * 109.49009 * 307.21661 * 28 6 5 48 48 H 1.08999 * 109.49228 * 67.26660 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5090 -0.7208 -1.2495 7 6 4.0350 0.6441 -1.3860 8 6 5.5559 0.6227 -1.2007 9 7 6.1267 -0.3600 -2.1344 10 6 7.1448 -0.0270 -2.9523 11 8 7.6642 -0.8744 -3.6526 12 7 7.5870 1.2455 -2.9940 13 6 8.5704 1.6157 -3.9221 14 6 9.1790 0.7679 -4.8614 15 6 10.0700 1.5013 -5.5665 16 7 10.0302 2.7655 -5.0956 17 6 10.8363 3.8895 -5.5784 18 6 9.9287 5.0265 -5.9715 19 1 8.8583 4.9221 -5.8721 20 6 10.4646 6.1995 -6.4590 21 7 9.6726 7.1915 -6.8025 22 14 12.3159 6.3797 -6.6315 23 1 12.7346 5.9191 -7.9798 24 1 12.6929 7.8054 -6.4564 25 1 12.9919 5.5581 -5.5957 26 7 9.0794 2.8162 -4.0682 27 6 5.5565 -1.7157 -2.1520 28 6 4.0356 -1.6023 -2.3000 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7210 -1.5951 1.2330 33 1 1.6767 -0.2075 -2.1391 34 1 1.6767 -1.7490 -1.2491 35 1 3.7947 1.0290 -2.3771 36 1 3.5851 1.2848 -0.6276 37 1 5.7960 0.3371 -0.1766 38 1 5.9647 1.6105 -1.4137 39 1 7.2248 1.9051 -2.3820 40 1 8.9721 -0.2835 -4.9967 41 1 10.7007 1.1398 -6.3651 42 1 11.5102 4.2193 -4.7876 43 1 11.4188 3.5736 -6.4438 44 1 10.0496 8.0170 -7.1452 45 1 5.7967 -2.2262 -1.2194 46 1 5.9657 -2.2740 -2.9941 47 1 3.5861 -2.5907 -2.2044 48 1 3.7949 -1.1864 -3.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345205510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:18 Heat of formation + Delta-G solvation = 34.029654 kcal Electronic energy + Delta-G solvation = -29054.041710 eV Core-core repulsion = 24954.044885 eV Total energy + Delta-G solvation = -4099.996825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94733 -40.10554 -38.93768 -37.29922 -34.86830 -34.65312 -33.25699 -31.81930 -31.35337 -31.03643 -29.36101 -28.39486 -27.01602 -25.08106 -24.25759 -22.94054 -22.11566 -21.53782 -20.78398 -20.05610 -19.16963 -18.15014 -17.06973 -16.85197 -16.60645 -16.42069 -15.96080 -15.73825 -15.45353 -15.19680 -14.87195 -14.71588 -14.49188 -14.31731 -14.02430 -13.70186 -13.32455 -13.06155 -12.87818 -12.81428 -12.51737 -12.41410 -12.29990 -12.18924 -12.08927 -11.70626 -11.66925 -11.50950 -11.15391 -11.03017 -10.76011 -10.63517 -10.39115 -10.08088 -9.98480 -9.71292 -9.50850 -9.02420 -8.75832 -8.60365 -8.14215 -7.44665 -6.22692 -4.24709 2.28907 2.60724 3.04998 3.15861 3.22325 3.23821 3.31108 3.39453 3.80428 4.01117 4.08869 4.21714 4.23859 4.48287 4.60532 4.66414 4.74067 4.80948 4.88467 4.94064 5.05202 5.07379 5.13793 5.18779 5.24621 5.35738 5.40526 5.50185 5.55051 5.59017 5.66326 5.72236 5.76245 6.08203 6.28210 6.38495 6.48434 6.52531 6.60228 6.63853 6.75252 6.90744 7.28922 7.33464 7.45257 7.82045 7.86574 8.35196 8.55790 8.61528 8.87307 9.32506 10.90038 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002105 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.041933 B =13298.666204 C =14355.299356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.098 0.902 4 O -0.549 6.549 5 C 0.022 3.978 6 N -0.526 5.526 7 C 0.038 3.962 8 C 0.115 3.885 9 N -0.629 5.629 10 C 0.718 3.282 11 O -0.567 6.567 12 N -0.644 5.644 13 C 0.279 3.721 14 C -0.282 4.282 15 C 0.051 3.949 16 N -0.321 5.321 17 C 0.232 3.768 18 C -0.533 4.533 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.888 5.888 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.301 5.301 27 C 0.138 3.862 28 C 0.040 3.960 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.372 0.628 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.406 0.594 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.268 0.732 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 -18.471 13.091 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.045 3.955 3 H 0.116 0.884 4 O -0.354 6.354 5 C -0.106 4.106 6 N -0.251 5.251 7 C -0.091 4.091 8 C -0.009 4.009 9 N -0.368 5.368 10 C 0.419 3.581 11 O -0.443 6.443 12 N -0.296 5.296 13 C 0.024 3.976 14 C -0.313 4.313 15 C -0.098 4.098 16 N -0.103 5.103 17 C 0.113 3.887 18 C -0.571 4.571 19 H 0.103 0.897 20 C -0.128 4.128 21 N -0.526 5.526 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.188 1.188 26 N -0.131 5.131 27 C 0.015 3.985 28 C -0.089 4.089 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.218 0.782 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.243 0.757 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.117 0.883 47 H 0.105 0.895 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.070 -17.188 13.413 26.504 hybrid contribution 0.035 -0.229 -1.147 1.170 sum -15.036 -17.417 12.266 26.074 Atomic orbital electron populations 1.22496 0.96278 1.02645 1.03001 1.21912 0.92252 0.96824 0.84462 0.88448 1.86621 1.77204 1.28690 1.42836 1.22888 0.88081 1.01570 0.98089 1.61873 1.06722 1.09507 1.46993 1.22543 0.95195 0.90310 1.01010 1.21755 0.92589 0.92271 0.94258 1.47256 1.35570 1.13332 1.40638 1.15503 0.80084 0.81977 0.80501 1.90849 1.59022 1.48523 1.45864 1.41585 1.40492 1.09981 1.37571 1.18809 0.93119 0.92692 0.92954 1.21516 1.05060 1.02227 1.02543 1.22539 1.01265 0.85475 1.00571 1.48584 1.28739 1.08018 1.24910 1.20032 0.90394 0.83572 0.94673 1.21110 0.95498 0.96786 1.43740 0.89676 1.24836 0.98092 0.95325 0.94560 1.69867 1.35135 1.04875 1.42700 0.86904 0.85656 0.78336 0.79193 1.19726 1.20555 1.18843 1.77385 1.08257 1.17075 1.10403 1.21544 0.90992 0.82363 1.03588 1.22559 0.95671 0.97741 0.92939 0.92229 0.91454 0.91602 0.78162 0.93888 0.90283 0.94089 0.89133 0.89945 0.89968 0.75662 0.82078 0.81432 0.94062 0.93354 0.92204 0.90748 0.88316 0.89474 0.94224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.80 9.53 37.16 0.35 -0.45 16 2 C 0.11 0.60 3.46 -26.73 -0.09 0.51 16 3 H 0.10 0.62 6.40 -51.93 -0.33 0.29 16 4 O -0.55 -3.90 13.20 -35.23 -0.47 -4.36 16 5 C 0.02 0.13 4.62 -3.83 -0.02 0.11 16 6 N -0.53 -3.95 4.50 -234.33 -1.05 -5.00 16 7 C 0.04 0.31 5.46 -3.70 -0.02 0.29 16 8 C 0.12 1.03 6.59 -3.60 -0.02 1.01 16 9 N -0.63 -7.24 3.01 -178.19 -0.54 -7.78 16 10 C 0.72 11.16 8.27 -86.91 -0.72 10.44 16 11 O -0.57 -10.40 12.97 5.29 0.07 -10.33 16 12 N -0.64 -10.56 5.37 -15.50 -0.08 -10.64 16 13 C 0.28 5.72 8.11 -154.36 -1.25 4.47 16 14 C -0.28 -5.64 9.61 -39.83 -0.38 -6.02 16 15 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 16 N -0.32 -7.37 3.67 -62.56 -0.23 -7.60 16 17 C 0.23 5.56 5.33 -5.19 -0.03 5.53 16 18 C -0.53 -15.12 9.79 -34.44 -0.34 -15.46 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 20 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 22 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 26 N -0.30 -7.00 12.42 31.44 0.39 -6.61 16 27 C 0.14 1.32 6.58 -3.60 -0.02 1.30 16 28 C 0.04 0.31 5.62 -3.70 -0.02 0.28 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.37 1.45 9.05 45.56 0.41 1.86 16 33 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.08 0.37 7.97 -51.93 -0.41 -0.04 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.63 6.16 -51.93 -0.32 0.31 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.70 5.64 -51.93 -0.29 0.40 16 39 H 0.41 5.61 6.32 -40.82 -0.26 5.35 16 40 H 0.16 3.16 5.93 -52.49 -0.31 2.85 16 41 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 42 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 43 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 1.05 7.10 -51.93 -0.37 0.68 16 47 H 0.09 0.51 7.99 -51.93 -0.41 0.10 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -35.52 383.98 -9.33 -44.85 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.46 Total: 7.21 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.86 Total: 4.83 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.74 Total: -63.53 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.40 Total: -14.69 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.52 -9.33 -44.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345205510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.877 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds