Wall clock time and date at job start Tue Mar 31 2020 19:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46748 * 2 1 4 4 O 1.42893 * 109.46913 * 119.99416 * 2 1 3 5 5 C 1.52999 * 109.47104 * 239.99649 * 2 1 3 6 6 N 1.46894 * 109.47115 * 179.97438 * 5 2 1 7 7 C 1.46907 * 111.00358 * 294.30410 * 6 5 2 8 8 C 1.53234 * 109.34177 * 172.74641 * 7 6 5 9 9 N 1.47082 * 108.52293 * 53.82950 * 8 7 6 10 10 C 1.34774 * 120.88381 * 128.79647 * 9 8 7 11 11 O 1.21589 * 120.00307 * 175.02695 * 10 9 8 12 12 N 1.34784 * 119.99590 * 355.02403 * 10 9 8 13 13 C 1.40191 * 119.99585 * 185.22395 * 12 10 9 14 14 C 1.40406 * 125.97703 * 359.97438 * 13 12 10 15 15 C 1.35240 * 107.86995 * 180.02562 * 14 13 12 16 16 N 1.34964 * 107.85919 * 359.97438 * 15 14 13 17 17 C 1.46503 * 125.97767 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47457 * 125.00042 * 17 16 15 19 19 H 1.08002 * 120.00114 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00370 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00557 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99524 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47120 * 90.00271 * 22 20 18 24 24 H 1.48502 * 109.46985 * 210.00148 * 22 20 18 25 25 H 1.48497 * 109.47323 * 330.00128 * 22 20 18 26 26 N 1.31215 * 125.96928 * 179.69388 * 13 12 10 27 27 C 1.47079 * 118.23305 * 308.81399 * 9 8 7 28 28 C 1.46897 * 111.00299 * 169.99988 * 6 5 2 29 29 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47052 * 300.00277 * 1 2 3 31 31 H 1.08996 * 109.46814 * 59.99807 * 1 2 3 32 32 H 0.96705 * 114.00335 * 60.00356 * 4 2 1 33 33 H 1.08999 * 109.46586 * 60.00107 * 5 2 1 34 34 H 1.08999 * 109.46949 * 300.00163 * 5 2 1 35 35 H 1.09004 * 109.48978 * 292.71026 * 7 6 5 36 36 H 1.08998 * 109.49085 * 52.78218 * 7 6 5 37 37 H 1.08997 * 109.62880 * 294.11927 * 8 7 6 38 38 H 1.09003 * 109.63010 * 173.53748 * 8 7 6 39 39 H 0.96997 * 119.99962 * 5.21519 * 12 10 9 40 40 H 1.07998 * 126.05886 * 0.02562 * 14 13 12 41 41 H 1.07998 * 126.07183 * 180.02562 * 15 14 13 42 42 H 1.09006 * 109.46587 * 244.99921 * 17 16 15 43 43 H 1.08997 * 109.46900 * 4.99421 * 17 16 15 44 44 H 0.96998 * 120.00657 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.63181 * 291.47099 * 27 9 8 46 46 H 1.09005 * 109.62125 * 170.89495 * 27 9 8 47 47 H 1.08999 * 109.49009 * 307.21661 * 28 6 5 48 48 H 1.08999 * 109.49228 * 67.26660 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5090 -0.7208 -1.2495 7 6 4.0350 0.6441 -1.3860 8 6 5.5559 0.6227 -1.2007 9 7 6.1267 -0.3600 -2.1344 10 6 7.1448 -0.0270 -2.9523 11 8 7.6642 -0.8744 -3.6526 12 7 7.5870 1.2455 -2.9940 13 6 8.5704 1.6157 -3.9221 14 6 9.1790 0.7679 -4.8614 15 6 10.0700 1.5013 -5.5665 16 7 10.0302 2.7655 -5.0956 17 6 10.8363 3.8895 -5.5784 18 6 9.9287 5.0265 -5.9715 19 1 8.8583 4.9221 -5.8721 20 6 10.4646 6.1995 -6.4590 21 7 9.6726 7.1915 -6.8025 22 14 12.3159 6.3797 -6.6315 23 1 12.7346 5.9191 -7.9798 24 1 12.6929 7.8054 -6.4564 25 1 12.9919 5.5581 -5.5957 26 7 9.0794 2.8162 -4.0682 27 6 5.5565 -1.7157 -2.1520 28 6 4.0356 -1.6023 -2.3000 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7210 -1.5951 1.2330 33 1 1.6767 -0.2075 -2.1391 34 1 1.6767 -1.7490 -1.2491 35 1 3.7947 1.0290 -2.3771 36 1 3.5851 1.2848 -0.6276 37 1 5.7960 0.3371 -0.1766 38 1 5.9647 1.6105 -1.4137 39 1 7.2248 1.9051 -2.3820 40 1 8.9721 -0.2835 -4.9967 41 1 10.7007 1.1398 -6.3651 42 1 11.5102 4.2193 -4.7876 43 1 11.4188 3.5736 -6.4438 44 1 10.0496 8.0170 -7.1452 45 1 5.7967 -2.2262 -1.2194 46 1 5.9657 -2.2740 -2.9941 47 1 3.5861 -2.5907 -2.2044 48 1 3.7949 -1.1864 -3.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345205510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:17 Heat of formation + Delta-G solvation = 6.020480 kcal Electronic energy + Delta-G solvation = -29055.256279 eV Core-core repulsion = 24954.044885 eV Total energy + Delta-G solvation = -4101.211394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33388 -41.33142 -39.74008 -37.98773 -36.32382 -35.58954 -35.10127 -33.15520 -32.20738 -31.94450 -30.96409 -29.37240 -28.59390 -25.80843 -25.01317 -24.55291 -23.30447 -22.27678 -22.01769 -21.43478 -20.36131 -19.24879 -19.09619 -18.14137 -17.39359 -17.33895 -17.02479 -16.76099 -16.51498 -16.14876 -15.88174 -15.80399 -15.47081 -15.39969 -15.33822 -14.82318 -14.66416 -14.36791 -14.22980 -13.86133 -13.78174 -13.44478 -13.30240 -13.00703 -12.89546 -12.67055 -12.54479 -12.41303 -12.33622 -12.29784 -12.20463 -11.83387 -11.63238 -11.52231 -11.47577 -11.08922 -10.87359 -10.86720 -9.96999 -9.73483 -9.30199 -9.02467 -8.37320 -6.47432 1.02453 1.07087 1.36860 1.40059 1.49788 1.65508 1.97651 2.29221 2.34528 2.74195 2.77201 2.95282 3.66009 3.74070 3.76873 3.89321 3.95313 4.14251 4.16742 4.19308 4.22683 4.28787 4.33104 4.44915 4.59559 4.60875 4.69490 4.72268 4.74214 4.80844 4.81576 4.85525 4.90673 4.92678 5.02289 5.11301 5.20063 5.24388 5.28629 5.45612 5.65771 5.89739 5.96815 6.01457 6.02221 6.41217 6.53428 6.60035 7.01197 7.05621 7.15509 7.32109 8.79763 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002105 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.041933 B =13298.666204 C =14355.299356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 H 0.087 0.913 4 O -0.568 6.568 5 C 0.025 3.975 6 N -0.529 5.529 7 C 0.042 3.958 8 C 0.112 3.888 9 N -0.620 5.620 10 C 0.714 3.286 11 O -0.597 6.597 12 N -0.641 5.641 13 C 0.283 3.717 14 C -0.294 4.294 15 C 0.062 3.938 16 N -0.345 5.345 17 C 0.239 3.761 18 C -0.546 4.546 19 H 0.026 0.974 20 C 0.013 3.987 21 N -0.942 5.942 22 Si 0.956 3.044 23 H -0.253 1.253 24 H -0.281 1.281 25 H -0.239 1.239 26 N -0.350 5.350 27 C 0.135 3.865 28 C 0.047 3.953 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.385 0.615 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.028 0.972 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.415 0.585 40 H 0.167 0.833 41 H 0.212 0.788 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.272 0.728 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.112 0.888 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.149 -20.218 13.602 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.048 3.952 3 H 0.105 0.895 4 O -0.375 6.375 5 C -0.103 4.103 6 N -0.253 5.253 7 C -0.087 4.087 8 C -0.011 4.011 9 N -0.357 5.357 10 C 0.415 3.585 11 O -0.475 6.475 12 N -0.294 5.294 13 C 0.028 3.972 14 C -0.325 4.325 15 C -0.085 4.085 16 N -0.126 5.126 17 C 0.120 3.880 18 C -0.584 4.584 19 H 0.044 0.956 20 C -0.185 4.185 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.177 1.177 24 H -0.206 1.206 25 H -0.163 1.163 26 N -0.181 5.181 27 C 0.013 3.987 28 C -0.082 4.082 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.046 0.954 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.255 0.745 40 H 0.184 0.816 41 H 0.228 0.772 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.130 0.870 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.338 -18.981 13.972 27.588 hybrid contribution -0.418 0.225 -1.225 1.314 sum -14.756 -18.756 12.747 27.056 Atomic orbital electron populations 1.22432 0.95128 1.03433 1.02875 1.21872 0.93070 0.96176 0.84057 0.89526 1.86585 1.77652 1.29924 1.43339 1.22926 0.86775 1.02628 0.97989 1.61907 1.07921 1.08893 1.46600 1.22497 0.94387 0.91091 1.00718 1.21945 0.93275 0.91795 0.94091 1.47372 1.34105 1.14590 1.39669 1.15675 0.80697 0.81237 0.80847 1.90811 1.60277 1.49124 1.47323 1.41631 1.39824 1.10796 1.37157 1.19141 0.92932 0.92074 0.93088 1.21703 1.05472 1.02469 1.02825 1.23235 1.00808 0.83983 1.00523 1.48497 1.29535 1.08805 1.25812 1.19893 0.89703 0.82661 0.95785 1.21224 0.93599 0.99239 1.44339 0.95585 1.25929 1.04625 0.94375 0.93602 1.70044 1.38211 1.05812 1.44047 0.85610 0.77570 0.78558 0.80600 1.17723 1.20637 1.16257 1.77303 1.09972 1.18762 1.12021 1.21722 0.92152 0.81144 1.03721 1.22512 0.94313 0.99025 0.92316 0.90999 0.91982 0.91307 0.76645 0.94073 0.88596 0.95357 0.87930 0.88780 0.89796 0.74511 0.81597 0.77151 0.93666 0.89992 0.91889 0.89439 0.89549 0.86968 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.53 71.98 0.69 -0.57 16 2 C 0.11 1.07 3.46 30.60 0.11 1.17 16 3 H 0.09 1.03 6.40 -2.39 -0.02 1.01 16 4 O -0.57 -7.09 13.20 -148.98 -1.97 -9.05 16 5 C 0.02 0.24 4.62 86.30 0.40 0.64 16 6 N -0.53 -7.04 4.50 -895.28 -4.03 -11.06 16 7 C 0.04 0.63 5.46 86.38 0.47 1.11 16 8 C 0.11 1.92 6.59 86.35 0.57 2.49 16 9 N -0.62 -13.95 3.01 -835.94 -2.52 -16.46 16 10 C 0.71 22.25 8.27 179.05 1.48 23.73 16 11 O -0.60 -22.00 12.97 -3.99 -0.05 -22.05 16 12 N -0.64 -21.31 5.37 -321.22 -1.72 -23.03 16 13 C 0.28 11.79 8.11 133.31 1.08 12.87 16 14 C -0.29 -11.63 9.61 22.11 0.21 -11.42 16 15 C 0.06 2.37 11.44 83.52 0.96 3.32 16 16 N -0.34 -15.75 3.67 -351.85 -1.29 -17.04 16 17 C 0.24 11.20 5.33 85.63 0.46 11.66 16 18 C -0.55 -31.76 9.79 25.60 0.25 -31.51 16 19 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 20 C 0.01 0.76 5.47 84.66 0.46 1.23 16 21 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 22 Si 0.96 40.92 27.47 68.60 1.88 42.80 16 23 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 26 N -0.35 -16.69 12.42 -54.43 -0.68 -17.36 16 27 C 0.13 2.44 6.58 86.35 0.57 3.01 16 28 C 0.05 0.65 5.62 86.38 0.49 1.14 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.38 2.21 9.05 -74.05 -0.67 1.54 16 33 H 0.04 0.43 8.12 -2.39 -0.02 0.41 16 34 H 0.10 0.62 7.97 -2.39 -0.02 0.60 16 35 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.10 1.33 6.16 -2.39 -0.01 1.32 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.40 5.64 -2.39 -0.01 1.39 16 39 H 0.42 11.75 6.32 -92.71 -0.59 11.16 16 40 H 0.17 6.43 5.93 -2.91 -0.02 6.42 16 41 H 0.21 5.83 8.06 -2.91 -0.02 5.80 16 42 H 0.05 2.07 7.20 -2.38 -0.02 2.06 16 43 H 0.08 3.29 7.50 -2.39 -0.02 3.27 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 1.81 7.10 -2.38 -0.02 1.79 16 47 H 0.11 1.02 7.99 -2.39 -0.02 1.00 16 48 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -80.28 383.98 -2.20 -82.47 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.31 Total: 29.92 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 8.19 Total: 18.86 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -9.93 Total: -142.96 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -2.02 Total: -31.10 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.80 kcal Total: -80.28 -2.20 -82.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345205510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.495 kcal (2) G-P(sol) polarization free energy of solvation -80.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds