Wall clock time and date at job start Tue Mar 31 2020 19:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46957 * 2 1 4 4 O 1.42898 * 109.46990 * 240.00184 * 2 1 3 5 5 C 1.53005 * 109.47346 * 119.99918 * 2 1 3 6 6 N 1.46901 * 109.46687 * 186.98609 * 5 2 1 7 7 C 1.46896 * 110.99915 * 290.83513 * 6 5 2 8 8 C 1.53240 * 109.33718 * 187.25800 * 7 6 5 9 9 N 1.47083 * 108.52297 * 306.17032 * 8 7 6 10 10 C 1.34773 * 120.88263 * 231.19005 * 9 8 7 11 11 O 1.21593 * 120.00030 * 184.98111 * 10 9 8 12 12 N 1.34775 * 120.00047 * 4.97857 * 10 9 8 13 13 C 1.40198 * 119.99918 * 174.82837 * 12 10 9 14 14 C 1.40396 * 125.97327 * 0.02562 * 13 12 10 15 15 C 1.35243 * 107.86660 * 179.76185 * 14 13 12 16 16 N 1.34964 * 107.85632 * 0.42308 * 15 14 13 17 17 C 1.46511 * 125.97154 * 179.83924 * 16 15 14 18 18 C 1.50699 * 109.46623 * 124.71697 * 17 16 15 19 19 H 1.08005 * 120.00446 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99398 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99391 * 179.72246 * 20 18 17 22 22 Si 1.86791 * 120.00380 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47024 * 269.72813 * 22 20 18 24 24 H 1.48505 * 109.46951 * 29.72409 * 22 20 18 25 25 H 1.48493 * 109.47394 * 149.72435 * 22 20 18 26 26 N 1.31212 * 125.97007 * 180.02562 * 13 12 10 27 27 C 1.47079 * 118.23216 * 51.45935 * 9 8 7 28 28 C 1.46896 * 111.00001 * 55.14182 * 6 5 2 29 29 H 1.09005 * 109.46978 * 299.99211 * 1 2 3 30 30 H 1.08995 * 109.47442 * 60.00028 * 1 2 3 31 31 H 1.09008 * 109.46753 * 180.02562 * 1 2 3 32 32 H 0.96693 * 114.00212 * 299.99696 * 4 2 1 33 33 H 1.08994 * 109.46683 * 66.98550 * 5 2 1 34 34 H 1.08997 * 109.47025 * 306.98975 * 5 2 1 35 35 H 1.08994 * 109.49338 * 67.30019 * 7 6 5 36 36 H 1.08998 * 109.51704 * 307.23050 * 7 6 5 37 37 H 1.09008 * 109.62977 * 186.46101 * 8 7 6 38 38 H 1.09003 * 109.79149 * 65.97695 * 8 7 6 39 39 H 0.97003 * 120.00078 * 354.82403 * 12 10 9 40 40 H 1.08001 * 126.06701 * 0.02562 * 14 13 12 41 41 H 1.08001 * 126.07017 * 180.25794 * 15 14 13 42 42 H 1.09001 * 109.47327 * 4.71424 * 17 16 15 43 43 H 1.09002 * 109.46843 * 244.71060 * 17 16 15 44 44 H 0.97003 * 120.00005 * 180.27241 * 21 20 18 45 45 H 1.09000 * 109.63034 * 68.25455 * 27 9 8 46 46 H 1.09001 * 109.62211 * 188.83345 * 27 9 8 47 47 H 1.09000 * 109.49298 * 292.69759 * 28 6 5 48 48 H 1.08997 * 109.49452 * 52.78495 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 7 3.4994 -0.5770 1.3363 7 6 4.1681 -1.3403 0.2742 8 6 5.6826 -1.3128 0.5062 9 7 6.1111 0.0889 0.6289 10 6 7.1332 0.5668 -0.1082 11 8 7.5333 1.7010 0.0704 12 7 7.7119 -0.2125 -1.0432 13 6 8.7010 0.3178 -1.8834 14 6 9.1826 1.6364 -1.8603 15 6 10.1303 1.7489 -2.8186 16 7 10.2408 0.5527 -3.4337 17 6 11.1506 0.2330 -4.5367 18 6 11.9990 -0.9542 -4.1599 19 1 11.8735 -1.4233 -3.1952 20 6 12.9363 -1.4407 -5.0465 21 7 13.6805 -2.4733 -4.7155 22 14 13.1540 -0.6289 -6.7146 23 1 12.2552 -1.2785 -7.7023 24 1 12.8156 0.8134 -6.6112 25 1 14.5639 -0.7761 -7.1566 26 7 9.3383 -0.3314 -2.8289 27 6 5.3985 0.9534 1.5818 28 6 3.8914 0.8383 1.3031 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.7210 -1.5951 -1.2329 33 1 1.7824 -1.7786 1.1889 34 1 1.5782 -0.2847 2.1348 35 1 3.9402 -0.8934 -0.6934 36 1 3.8163 -2.3718 0.2904 37 1 6.1909 -1.7785 -0.3382 38 1 5.9255 -1.8515 1.4222 39 1 7.4441 -1.1403 -1.1347 40 1 8.8573 2.4205 -1.1926 41 1 10.6961 2.6387 -3.0520 42 1 11.7935 1.0900 -4.7375 43 1 10.5708 -0.0034 -5.4290 44 1 14.3427 -2.8132 -5.3375 45 1 5.6115 0.6293 2.6004 46 1 5.7189 1.9868 1.4488 47 1 3.6674 1.2549 0.3211 48 1 3.3388 1.3868 2.0660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345205544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:20 Heat of formation + Delta-G solvation = 36.168303 kcal Electronic energy + Delta-G solvation = -29414.551483 eV Core-core repulsion = 25314.647397 eV Total energy + Delta-G solvation = -4099.904086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94275 -40.19127 -39.18619 -37.10429 -34.83178 -34.58892 -33.22495 -31.78443 -31.52477 -30.89557 -29.32650 -28.35835 -26.98700 -24.94872 -24.21772 -22.89525 -22.49700 -21.66004 -20.67737 -19.97057 -19.10208 -18.10882 -17.04600 -16.92302 -16.66202 -16.39108 -15.91158 -15.67255 -15.49194 -15.36001 -14.99177 -14.64710 -14.51138 -14.20572 -13.96501 -13.58656 -13.07589 -13.03936 -13.00074 -12.78738 -12.53153 -12.39021 -12.29195 -12.10956 -12.02180 -11.82126 -11.51180 -11.41102 -11.33580 -11.09311 -10.86589 -10.75321 -10.46876 -10.08609 -9.96029 -9.69020 -9.47523 -8.96992 -8.73797 -8.41256 -8.10887 -7.41948 -6.20634 -4.22509 2.33005 2.64126 3.08851 3.18174 3.23464 3.24656 3.37416 3.49748 3.83000 3.84406 4.05432 4.20450 4.25438 4.50961 4.54821 4.64318 4.69304 4.74716 4.96650 5.03988 5.07466 5.11118 5.15967 5.23675 5.26958 5.41539 5.43672 5.48796 5.58110 5.60195 5.67253 5.75869 5.87239 6.12042 6.32102 6.42306 6.51120 6.53808 6.62279 6.64129 6.78328 6.94387 7.13222 7.31226 7.48596 7.85378 7.89703 8.37477 8.59955 8.64698 8.89806 9.34505 10.92092 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.002177 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.215153 B =12856.163143 C =13291.060310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.060 3.940 3 H 0.101 0.899 4 O -0.557 6.557 5 C 0.025 3.975 6 N -0.530 5.530 7 C 0.029 3.971 8 C 0.112 3.888 9 N -0.628 5.628 10 C 0.719 3.281 11 O -0.568 6.568 12 N -0.644 5.644 13 C 0.280 3.720 14 C -0.282 4.282 15 C 0.051 3.949 16 N -0.321 5.321 17 C 0.233 3.767 18 C -0.533 4.533 19 H 0.086 0.914 20 C 0.075 3.925 21 N -0.888 5.888 22 Si 0.875 3.125 23 H -0.272 1.272 24 H -0.265 1.265 25 H -0.281 1.281 26 N -0.301 5.301 27 C 0.138 3.862 28 C 0.035 3.965 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.373 0.627 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.406 0.594 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.268 0.732 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.047 0.953 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.743 4.354 12.547 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.000 4.000 3 H 0.119 0.881 4 O -0.363 6.363 5 C -0.104 4.104 6 N -0.253 5.253 7 C -0.100 4.100 8 C -0.012 4.012 9 N -0.367 5.367 10 C 0.420 3.580 11 O -0.443 6.443 12 N -0.296 5.296 13 C 0.025 3.975 14 C -0.314 4.314 15 C -0.098 4.098 16 N -0.103 5.103 17 C 0.113 3.887 18 C -0.571 4.571 19 H 0.104 0.896 20 C -0.129 4.129 21 N -0.526 5.526 22 Si 0.701 3.299 23 H -0.197 1.197 24 H -0.190 1.190 25 H -0.206 1.206 26 N -0.132 5.132 27 C 0.015 3.985 28 C -0.094 4.094 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.221 0.779 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.243 0.757 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.065 0.935 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.637 4.309 12.247 28.737 hybrid contribution -0.573 0.181 -1.137 1.286 sum -26.210 4.490 11.110 28.820 Atomic orbital electron populations 1.22446 0.96138 1.02610 1.02908 1.22766 0.93587 0.97854 0.85815 0.88134 1.86654 1.76238 1.29198 1.44179 1.22960 0.88305 1.01433 0.97706 1.62182 1.05958 1.10486 1.46718 1.22737 0.93285 0.98903 0.95035 1.21799 0.94647 0.82335 1.02373 1.47220 1.34426 1.11742 1.43262 1.15500 0.79643 0.84130 0.78770 1.90848 1.64803 1.18178 1.70518 1.41577 1.39138 1.14425 1.34434 1.18807 0.92557 0.92519 0.93598 1.21520 1.05315 0.97519 1.07003 1.22533 0.99993 0.91317 0.95971 1.48581 1.28698 1.05752 1.27270 1.20037 0.87107 0.98831 0.82679 1.21125 1.18302 1.12668 1.05008 0.89641 1.24844 0.95123 0.94701 0.98187 1.69878 1.22412 1.23842 1.36432 0.86883 0.78154 0.80306 0.84560 1.19739 1.18958 1.20632 1.77378 1.07938 1.15861 1.12009 1.21634 0.89095 0.95963 0.91832 1.22679 0.96372 0.89117 1.01217 0.91489 0.91793 0.92212 0.77900 0.90226 0.89587 0.90770 0.90034 0.90083 0.90522 0.75668 0.82078 0.81454 0.92931 0.94538 0.92225 0.90884 0.88351 0.93513 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.77 9.53 37.16 0.35 -0.41 16 2 C 0.06 0.34 3.25 -26.73 -0.09 0.25 16 3 H 0.10 0.70 6.11 -51.93 -0.32 0.38 16 4 O -0.56 -3.96 10.31 -35.23 -0.36 -4.33 16 5 C 0.02 0.12 5.19 -3.82 -0.02 0.10 16 6 N -0.53 -3.74 4.83 -234.03 -1.13 -4.87 16 7 C 0.03 0.22 4.84 -3.70 -0.02 0.20 16 8 C 0.11 1.01 6.59 -3.60 -0.02 0.98 16 9 N -0.63 -7.37 3.00 -177.90 -0.53 -7.90 16 10 C 0.72 11.43 8.27 -86.92 -0.72 10.71 16 11 O -0.57 -10.65 12.97 5.28 0.07 -10.58 16 12 N -0.64 -10.78 5.37 -15.51 -0.08 -10.86 16 13 C 0.28 5.83 8.11 -154.36 -1.25 4.58 16 14 C -0.28 -5.74 9.61 -39.84 -0.38 -6.12 16 15 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 16 N -0.32 -7.46 3.67 -62.55 -0.23 -7.69 16 17 C 0.23 5.61 5.33 -5.19 -0.03 5.58 16 18 C -0.53 -15.23 9.79 -34.44 -0.34 -15.57 16 19 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 22 Si 0.87 20.38 27.47 -169.99 -4.67 15.71 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 N -0.30 -7.09 12.42 31.44 0.39 -6.70 16 27 C 0.14 1.35 6.61 -3.36 -0.02 1.32 16 28 C 0.03 0.27 4.86 -3.46 -0.02 0.25 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 32 H 0.37 1.42 9.04 45.56 0.41 1.83 16 33 H 0.08 0.33 7.99 -51.93 -0.41 -0.09 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.70 5.79 -51.93 -0.30 0.40 16 36 H 0.08 0.48 8.00 -51.93 -0.42 0.06 16 37 H 0.08 0.70 5.64 -51.92 -0.29 0.41 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.41 5.76 6.32 -40.82 -0.26 5.50 16 40 H 0.16 3.21 5.93 -52.49 -0.31 2.90 16 41 H 0.17 2.66 8.06 -52.49 -0.42 2.23 16 42 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 43 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 1.07 7.09 -51.93 -0.37 0.70 16 47 H 0.05 0.43 6.52 -51.93 -0.34 0.09 16 48 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -35.78 378.12 -9.26 -45.04 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.34 Total: 7.81 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -2.85 Total: 4.73 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.81 Total: -64.09 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.29 Total: -14.91 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.78 -9.26 -45.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345205544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.211 kcal (2) G-P(sol) polarization free energy of solvation -35.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds