Wall clock time and date at job start Tue Mar 31 2020 19:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46957 * 2 1 4 4 O 1.42898 * 109.46990 * 240.00184 * 2 1 3 5 5 C 1.53005 * 109.47346 * 119.99918 * 2 1 3 6 6 N 1.46901 * 109.46687 * 186.98609 * 5 2 1 7 7 C 1.46896 * 110.99915 * 290.83513 * 6 5 2 8 8 C 1.53240 * 109.33718 * 187.25800 * 7 6 5 9 9 N 1.47083 * 108.52297 * 306.17032 * 8 7 6 10 10 C 1.34773 * 120.88263 * 231.19005 * 9 8 7 11 11 O 1.21593 * 120.00030 * 184.98111 * 10 9 8 12 12 N 1.34775 * 120.00047 * 4.97857 * 10 9 8 13 13 C 1.40198 * 119.99918 * 174.82837 * 12 10 9 14 14 C 1.40396 * 125.97327 * 0.02562 * 13 12 10 15 15 C 1.35243 * 107.86660 * 179.76185 * 14 13 12 16 16 N 1.34964 * 107.85632 * 0.42308 * 15 14 13 17 17 C 1.46511 * 125.97154 * 179.83924 * 16 15 14 18 18 C 1.50699 * 109.46623 * 124.71697 * 17 16 15 19 19 H 1.08005 * 120.00446 * 359.97438 * 18 17 16 20 20 C 1.37884 * 119.99398 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99391 * 179.72246 * 20 18 17 22 22 Si 1.86791 * 120.00380 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47024 * 269.72813 * 22 20 18 24 24 H 1.48505 * 109.46951 * 29.72409 * 22 20 18 25 25 H 1.48493 * 109.47394 * 149.72435 * 22 20 18 26 26 N 1.31212 * 125.97007 * 180.02562 * 13 12 10 27 27 C 1.47079 * 118.23216 * 51.45935 * 9 8 7 28 28 C 1.46896 * 111.00001 * 55.14182 * 6 5 2 29 29 H 1.09005 * 109.46978 * 299.99211 * 1 2 3 30 30 H 1.08995 * 109.47442 * 60.00028 * 1 2 3 31 31 H 1.09008 * 109.46753 * 180.02562 * 1 2 3 32 32 H 0.96693 * 114.00212 * 299.99696 * 4 2 1 33 33 H 1.08994 * 109.46683 * 66.98550 * 5 2 1 34 34 H 1.08997 * 109.47025 * 306.98975 * 5 2 1 35 35 H 1.08994 * 109.49338 * 67.30019 * 7 6 5 36 36 H 1.08998 * 109.51704 * 307.23050 * 7 6 5 37 37 H 1.09008 * 109.62977 * 186.46101 * 8 7 6 38 38 H 1.09003 * 109.79149 * 65.97695 * 8 7 6 39 39 H 0.97003 * 120.00078 * 354.82403 * 12 10 9 40 40 H 1.08001 * 126.06701 * 0.02562 * 14 13 12 41 41 H 1.08001 * 126.07017 * 180.25794 * 15 14 13 42 42 H 1.09001 * 109.47327 * 4.71424 * 17 16 15 43 43 H 1.09002 * 109.46843 * 244.71060 * 17 16 15 44 44 H 0.97003 * 120.00005 * 180.27241 * 21 20 18 45 45 H 1.09000 * 109.63034 * 68.25455 * 27 9 8 46 46 H 1.09001 * 109.62211 * 188.83345 * 27 9 8 47 47 H 1.09000 * 109.49298 * 292.69759 * 28 6 5 48 48 H 1.08997 * 109.49452 * 52.78495 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 7 3.4994 -0.5770 1.3363 7 6 4.1681 -1.3403 0.2742 8 6 5.6826 -1.3128 0.5062 9 7 6.1111 0.0889 0.6289 10 6 7.1332 0.5668 -0.1082 11 8 7.5333 1.7010 0.0704 12 7 7.7119 -0.2125 -1.0432 13 6 8.7010 0.3178 -1.8834 14 6 9.1826 1.6364 -1.8603 15 6 10.1303 1.7489 -2.8186 16 7 10.2408 0.5527 -3.4337 17 6 11.1506 0.2330 -4.5367 18 6 11.9990 -0.9542 -4.1599 19 1 11.8735 -1.4233 -3.1952 20 6 12.9363 -1.4407 -5.0465 21 7 13.6805 -2.4733 -4.7155 22 14 13.1540 -0.6289 -6.7146 23 1 12.2552 -1.2785 -7.7023 24 1 12.8156 0.8134 -6.6112 25 1 14.5639 -0.7761 -7.1566 26 7 9.3383 -0.3314 -2.8289 27 6 5.3985 0.9534 1.5818 28 6 3.8914 0.8383 1.3031 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.7210 -1.5951 -1.2329 33 1 1.7824 -1.7786 1.1889 34 1 1.5782 -0.2847 2.1348 35 1 3.9402 -0.8934 -0.6934 36 1 3.8163 -2.3718 0.2904 37 1 6.1909 -1.7785 -0.3382 38 1 5.9255 -1.8515 1.4222 39 1 7.4441 -1.1403 -1.1347 40 1 8.8573 2.4205 -1.1926 41 1 10.6961 2.6387 -3.0520 42 1 11.7935 1.0900 -4.7375 43 1 10.5708 -0.0034 -5.4290 44 1 14.3427 -2.8132 -5.3375 45 1 5.6115 0.6293 2.6004 46 1 5.7189 1.9868 1.4488 47 1 3.6674 1.2549 0.3211 48 1 3.3388 1.3868 2.0660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345205544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:20 Heat of formation + Delta-G solvation = 7.738591 kcal Electronic energy + Delta-G solvation = -29415.784288 eV Core-core repulsion = 25314.647397 eV Total energy + Delta-G solvation = -4101.136891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32833 -41.36052 -40.03619 -37.84919 -36.31215 -35.51544 -35.06585 -33.11649 -32.33076 -31.86372 -30.94869 -29.32943 -28.57372 -25.64185 -25.05876 -24.41361 -23.40655 -22.69265 -22.03903 -21.29065 -20.26986 -19.20393 -19.08842 -18.13987 -17.51774 -17.26245 -16.96948 -16.84402 -16.39410 -16.19992 -16.05020 -15.89846 -15.43010 -15.40887 -15.13587 -14.80942 -14.73221 -14.42050 -13.92105 -13.88957 -13.62967 -13.50728 -13.35851 -12.96598 -12.80844 -12.66255 -12.65096 -12.41544 -12.18675 -12.13210 -11.98312 -11.88198 -11.81731 -11.67362 -11.46664 -11.25796 -11.06995 -10.86886 -9.95575 -9.72330 -9.09942 -8.96372 -8.36721 -6.46882 1.00939 1.11034 1.37238 1.40172 1.49365 1.65766 1.99620 2.29499 2.35682 2.77753 2.92811 2.95749 3.45304 3.74443 3.89064 3.90894 3.99454 4.07124 4.17460 4.19198 4.22395 4.30532 4.43635 4.50779 4.60442 4.61625 4.73550 4.76266 4.81465 4.85082 4.86656 4.92801 4.92998 4.97010 5.11062 5.13074 5.19562 5.24797 5.27288 5.48690 5.67459 5.90404 6.01861 6.02236 6.07509 6.41710 6.54841 6.61017 6.82058 7.06342 7.15872 7.33852 8.80327 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.002177 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.215153 B =12856.163143 C =13291.060310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 H 0.083 0.917 4 O -0.579 6.579 5 C 0.029 3.971 6 N -0.532 5.532 7 C 0.036 3.964 8 C 0.106 3.894 9 N -0.619 5.619 10 C 0.713 3.287 11 O -0.600 6.600 12 N -0.640 5.640 13 C 0.284 3.716 14 C -0.294 4.294 15 C 0.063 3.937 16 N -0.345 5.345 17 C 0.239 3.761 18 C -0.546 4.546 19 H 0.026 0.974 20 C 0.013 3.987 21 N -0.942 5.942 22 Si 0.956 3.044 23 H -0.265 1.265 24 H -0.230 1.230 25 H -0.278 1.278 26 N -0.350 5.350 27 C 0.134 3.866 28 C 0.044 3.956 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.386 0.614 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.415 0.585 40 H 0.166 0.834 41 H 0.211 0.789 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.272 0.728 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.029 0.971 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.470 5.448 12.309 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.002 3.998 3 H 0.101 0.899 4 O -0.388 6.388 5 C -0.099 4.099 6 N -0.255 5.255 7 C -0.092 4.092 8 C -0.017 4.017 9 N -0.356 5.356 10 C 0.414 3.586 11 O -0.478 6.478 12 N -0.294 5.294 13 C 0.028 3.972 14 C -0.326 4.326 15 C -0.085 4.085 16 N -0.127 5.127 17 C 0.120 3.880 18 C -0.584 4.584 19 H 0.044 0.956 20 C -0.186 4.186 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.190 1.190 24 H -0.152 1.152 25 H -0.203 1.203 26 N -0.180 5.180 27 C 0.011 3.989 28 C -0.085 4.085 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.236 0.764 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.255 0.745 40 H 0.183 0.817 41 H 0.228 0.772 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.047 0.953 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -27.441 5.380 12.061 30.454 hybrid contribution -0.137 -0.229 -0.872 0.912 sum -27.578 5.151 11.189 30.204 Atomic orbital electron populations 1.22381 0.94965 1.03365 1.02784 1.22725 0.94411 0.96951 0.85726 0.89933 1.86625 1.76754 1.30403 1.44977 1.23013 0.86705 1.02411 0.97775 1.62210 1.07376 1.09699 1.46182 1.22665 0.92074 1.00141 0.94334 1.22049 0.95922 0.80648 1.03059 1.47352 1.32888 1.13145 1.42216 1.15702 0.80287 0.83713 0.78881 1.90808 1.66024 1.19496 1.71496 1.41623 1.38487 1.15108 1.34137 1.19143 0.92302 0.92793 0.92961 1.21705 1.05867 0.97467 1.07516 1.23223 0.99332 0.91449 0.94521 1.48503 1.29313 1.06789 1.28047 1.19907 0.87023 0.97851 0.83253 1.21234 1.19782 1.14445 1.02959 0.95609 1.25941 0.94197 0.95150 1.03289 1.70054 1.23486 1.25969 1.38585 0.85603 0.78172 0.80911 0.77597 1.19035 1.15233 1.20329 1.77296 1.09525 1.17390 1.13828 1.21820 0.90297 0.94916 0.91860 1.22586 0.94890 0.89972 1.01012 0.90425 0.93095 0.91000 0.76405 0.88727 0.88226 0.92571 0.87759 0.90104 0.89211 0.74514 0.81669 0.77187 0.89855 0.93752 0.91896 0.89576 0.89847 0.95305 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 9.53 71.98 0.69 -0.49 16 2 C 0.06 0.61 3.25 30.60 0.10 0.71 16 3 H 0.08 1.10 6.11 -2.39 -0.01 1.09 16 4 O -0.58 -7.72 10.31 -148.98 -1.54 -9.25 16 5 C 0.03 0.21 5.19 86.30 0.45 0.66 16 6 N -0.53 -6.36 4.83 -894.34 -4.32 -10.67 16 7 C 0.04 0.49 4.84 86.38 0.42 0.91 16 8 C 0.11 1.79 6.59 86.35 0.57 2.36 16 9 N -0.62 -14.33 3.00 -835.01 -2.51 -16.83 16 10 C 0.71 22.99 8.27 179.06 1.48 24.47 16 11 O -0.60 -22.88 12.97 -4.01 -0.05 -22.93 16 12 N -0.64 -21.91 5.37 -321.23 -1.72 -23.63 16 13 C 0.28 12.05 8.11 133.31 1.08 13.13 16 14 C -0.29 -11.94 9.61 22.10 0.21 -11.73 16 15 C 0.06 2.43 11.44 83.52 0.96 3.38 16 16 N -0.34 -15.96 3.67 -351.82 -1.29 -17.25 16 17 C 0.24 11.30 5.33 85.63 0.46 11.76 16 18 C -0.55 -32.02 9.79 25.60 0.25 -31.77 16 19 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 20 C 0.01 0.74 5.47 84.66 0.46 1.20 16 21 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 22 Si 0.96 41.19 27.47 68.60 1.88 43.08 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.23 -8.55 6.54 99.48 0.65 -7.90 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 N -0.35 -16.91 12.42 -54.43 -0.68 -17.58 16 27 C 0.13 2.51 6.61 86.50 0.57 3.08 16 28 C 0.04 0.62 4.86 86.54 0.42 1.04 16 29 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.39 2.39 9.04 -74.06 -0.67 1.72 16 33 H 0.09 0.46 7.99 -2.39 -0.02 0.44 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 1.01 5.79 -2.39 -0.01 1.00 16 36 H 0.10 0.96 8.00 -2.39 -0.02 0.94 16 37 H 0.08 1.36 5.64 -2.38 -0.01 1.35 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.42 12.11 6.32 -92.71 -0.59 11.52 16 40 H 0.17 6.58 5.93 -2.91 -0.02 6.56 16 41 H 0.21 5.99 8.06 -2.91 -0.02 5.97 16 42 H 0.08 3.42 7.12 -2.39 -0.02 3.40 16 43 H 0.04 2.02 7.57 -2.39 -0.02 2.00 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.84 7.09 -2.39 -0.02 1.82 16 47 H 0.03 0.52 6.52 -2.39 -0.02 0.51 16 48 H 0.11 1.03 8.11 -2.39 -0.02 1.02 16 Total: -1.00 -81.77 378.12 -2.12 -83.89 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.31 Total: 30.80 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 8.11 Total: 18.72 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -10.22 Total: -144.30 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.59 Total: -32.18 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.88 Total: 43.08 kcal Total: -81.77 -2.12 -83.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345205544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.628 kcal (2) G-P(sol) polarization free energy of solvation -81.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds