Wall clock time and date at job start Tue Mar 31 2020 20:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46919 * 2 1 4 4 N 1.46500 * 109.46641 * 119.99595 * 2 1 3 5 5 C 1.40799 * 120.00257 * 274.99697 * 4 2 1 6 6 C 1.40226 * 126.06705 * 0.03405 * 5 4 2 7 7 N 1.30856 * 108.36657 * 179.97438 * 6 5 4 8 8 N 1.40077 * 108.36214 * 359.97438 * 7 6 5 9 9 C 1.46493 * 126.07478 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47060 * 304.97767 * 9 8 7 11 11 O 1.21275 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99745 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99733 * 179.97438 * 12 10 9 14 14 C 1.46491 * 120.00220 * 0.02562 * 12 10 9 15 15 C 1.35701 * 126.07167 * 179.71328 * 5 4 2 16 16 C 1.50696 * 109.47467 * 239.99762 * 2 1 3 17 17 O 1.21280 * 120.00095 * 240.00497 * 16 2 1 18 18 N 1.34771 * 119.99966 * 60.00047 * 16 2 1 19 19 C 1.46496 * 120.00157 * 359.97438 * 18 16 2 20 20 C 1.46506 * 120.00084 * 180.02562 * 18 16 2 21 21 C 1.50699 * 109.46928 * 270.00021 * 20 18 16 22 22 H 1.08003 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00518 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46922 * 90.00621 * 25 23 21 27 27 H 1.48500 * 109.47411 * 210.00442 * 25 23 21 28 28 H 1.48494 * 109.47378 * 330.00637 * 25 23 21 29 29 H 1.09001 * 109.46709 * 60.00399 * 1 2 3 30 30 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47276 * 300.00381 * 1 2 3 32 32 H 0.96998 * 120.00245 * 95.00130 * 4 2 1 33 33 H 1.08000 * 125.81371 * 359.95062 * 6 5 4 34 34 H 1.09002 * 109.46993 * 64.97617 * 9 8 7 35 35 H 1.08997 * 109.47277 * 184.97724 * 9 8 7 36 36 H 1.09002 * 109.47253 * 90.00146 * 13 12 10 37 37 H 1.08995 * 109.47548 * 210.00131 * 13 12 10 38 38 H 1.09002 * 109.47325 * 330.00399 * 13 12 10 39 39 H 1.08998 * 109.47336 * 90.00172 * 14 12 10 40 40 H 1.09002 * 109.47239 * 209.99823 * 14 12 10 41 41 H 1.09003 * 109.47219 * 329.99871 * 14 12 10 42 42 H 1.08000 * 126.22333 * 0.02562 * 15 5 4 43 43 H 1.08995 * 109.47445 * 269.99904 * 19 18 16 44 44 H 1.09001 * 109.47057 * 30.00532 * 19 18 16 45 45 H 1.08999 * 109.47333 * 150.00092 * 19 18 16 46 46 H 1.09004 * 109.47073 * 29.99849 * 20 18 16 47 47 H 1.09000 * 109.47212 * 149.99932 * 20 18 16 48 48 H 0.96992 * 120.00316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1527 0.0119 2.4091 6 6 1.8573 1.3671 2.6153 7 7 2.1072 1.6578 3.8665 8 7 2.5704 0.4999 4.5045 9 6 2.9635 0.3888 5.9113 10 6 4.0178 1.4199 6.2213 11 8 4.4033 2.1732 5.3525 12 7 4.5324 1.5051 7.4641 13 6 5.5578 2.5071 7.7653 14 6 4.0672 0.5949 8.5134 15 6 2.5855 -0.5038 3.5873 16 6 2.0324 -0.7104 -1.2304 17 8 2.7296 -1.6965 -1.1190 18 7 1.7069 -0.2500 -2.4545 19 6 0.8642 0.9407 -2.5890 20 6 2.1949 -0.9410 -3.6506 21 6 3.5226 -0.3580 -4.0610 22 1 3.9594 0.4464 -3.4878 23 6 4.1801 -0.8523 -5.1674 24 7 3.6484 -1.8322 -5.8651 25 14 5.8255 -0.1292 -5.6765 26 1 6.9217 -0.8705 -5.0026 27 1 5.9825 -0.2440 -7.1487 28 1 5.8805 1.3016 -5.2830 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2489 -1.6317 1.1528 33 1 1.4870 2.0539 1.8687 34 1 2.0933 0.5567 6.5460 35 1 3.3634 -0.6076 6.0992 36 1 5.0791 3.4284 8.0974 37 1 6.2113 2.1328 8.5532 38 1 6.1459 2.7059 6.8693 39 1 4.6853 -0.3029 8.5161 40 1 4.1406 1.0893 9.4821 41 1 3.0294 0.3209 8.3230 42 1 2.8888 -1.5251 3.7639 43 1 -0.1836 0.6424 -2.6226 44 1 1.0273 1.5995 -1.7361 45 1 1.1219 1.4663 -3.5085 46 1 2.3156 -2.0023 -3.4333 47 1 1.4769 -0.8155 -4.4611 48 1 4.1108 -2.1797 -6.6437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357958536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:21 Heat of formation + Delta-G solvation = 43.157222 kcal Electronic energy + Delta-G solvation = -28885.083939 eV Core-core repulsion = 24785.482915 eV Total energy + Delta-G solvation = -4099.601024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14705 -39.94348 -39.25317 -35.97888 -35.57365 -34.87818 -33.19229 -32.59994 -30.93596 -29.46306 -28.24279 -27.56739 -27.02157 -26.07606 -25.51865 -23.90818 -22.25958 -21.48241 -20.54118 -19.50639 -18.44059 -17.64172 -17.45059 -16.70974 -16.47458 -16.35852 -15.96135 -15.65530 -15.02022 -14.81407 -14.57868 -14.49123 -14.11957 -13.82054 -13.68013 -13.60414 -13.30015 -13.19675 -13.10868 -12.84359 -12.60556 -12.47218 -12.41397 -12.24506 -12.06442 -11.92432 -11.52228 -11.27926 -11.06142 -10.86175 -10.68712 -10.56458 -10.33501 -10.14346 -9.94164 -9.61481 -9.24518 -9.16737 -8.87073 -8.41921 -7.65713 -6.91829 -6.02991 -4.07519 1.86168 2.21096 2.26914 2.69406 3.11322 3.33423 3.37835 3.39733 3.44244 3.60965 3.95023 4.14277 4.39229 4.46168 4.47126 4.65799 4.77089 4.85512 4.92198 5.00662 5.06926 5.12357 5.14917 5.31162 5.32642 5.41572 5.42185 5.56551 5.65826 5.77968 5.84892 5.90837 5.92661 5.96848 6.18460 6.36285 6.47334 6.75146 7.00348 7.04193 7.42918 7.51138 7.59192 7.74198 7.79154 7.93601 8.17527 8.24374 8.41465 8.90189 9.06379 9.57580 11.05041 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.002185 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.811871 B =12809.739510 C =13826.782675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.144 3.856 3 H 0.091 0.909 4 N -0.722 5.722 5 C 0.086 3.914 6 C 0.008 3.992 7 N -0.249 5.249 8 N -0.370 5.370 9 C 0.133 3.867 10 C 0.496 3.504 11 O -0.501 6.501 12 N -0.626 5.626 13 C 0.086 3.914 14 C 0.074 3.926 15 C -0.042 4.042 16 C 0.502 3.498 17 O -0.538 6.538 18 N -0.598 5.598 19 C 0.079 3.921 20 C 0.245 3.755 21 C -0.526 4.526 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.169 0.831 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.033 0.967 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 4.999 29.044 30.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.034 3.966 3 H 0.109 0.891 4 N -0.361 5.361 5 C -0.023 4.023 6 C -0.182 4.182 7 N -0.071 5.071 8 N -0.159 5.159 9 C 0.007 3.993 10 C 0.281 3.719 11 O -0.374 6.374 12 N -0.363 5.363 13 C -0.056 4.056 14 C -0.069 4.069 15 C -0.187 4.187 16 C 0.288 3.712 17 O -0.415 6.415 18 N -0.330 5.330 19 C -0.065 4.065 20 C 0.126 3.874 21 C -0.565 4.565 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.244 0.756 33 H 0.196 0.804 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.186 0.814 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.077 5.793 29.305 30.300 hybrid contribution 1.125 -0.627 -0.891 1.566 sum -3.952 5.167 28.414 29.149 Atomic orbital electron populations 1.22485 0.94621 1.03132 1.02983 1.20530 0.94350 0.96838 0.84853 0.89134 1.43569 1.76087 1.12104 1.04292 1.17652 1.05397 0.91967 0.87241 1.23580 1.05170 0.94726 0.94692 1.77243 1.16633 1.06117 1.07058 1.47383 1.54107 1.06916 1.07539 1.21281 0.97925 1.00036 0.80071 1.20797 0.83318 0.85625 0.82146 1.90815 1.59113 1.41966 1.45486 1.47746 1.41767 1.36702 1.10120 1.21640 0.90730 0.91051 1.02181 1.21883 1.00125 0.93654 0.91261 1.21502 1.13057 0.95079 0.89051 1.20345 0.81063 0.85281 0.84547 1.90649 1.37892 1.26933 1.86041 1.48086 1.49521 1.28211 1.07159 1.21837 0.93834 0.88108 1.02698 1.19307 0.94262 0.93694 0.80099 1.21434 1.04783 1.19073 1.11163 0.92451 1.24933 0.97951 0.94980 0.96271 1.69928 1.38946 1.26127 1.18414 0.86499 0.84009 0.79475 0.77451 1.20573 1.21144 1.19899 0.90378 0.92113 0.91852 0.75648 0.80393 0.87378 0.86091 0.92625 0.91125 0.90429 0.92116 0.90569 0.90841 0.81373 0.93179 0.92169 0.90711 0.93828 0.94855 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.14 37.16 0.34 -1.81 16 2 C 0.14 2.23 2.19 -69.08 -0.15 2.08 16 3 H 0.09 1.33 6.42 -51.93 -0.33 0.99 16 4 N -0.72 -11.08 5.19 -53.45 -0.28 -11.36 16 5 C 0.09 1.23 6.94 -83.90 -0.58 0.65 16 6 C 0.01 0.12 11.15 -17.22 -0.19 -0.08 16 7 N -0.25 -3.78 11.64 30.70 0.36 -3.42 16 8 N -0.37 -4.65 3.43 -62.18 -0.21 -4.87 16 9 C 0.13 1.07 5.55 -5.20 -0.03 1.04 16 10 C 0.50 5.26 7.70 -10.98 -0.08 5.18 16 11 O -0.50 -8.04 15.29 5.56 0.09 -7.95 16 12 N -0.63 -4.42 3.27 -189.52 -0.62 -5.04 16 13 C 0.09 0.56 10.44 59.85 0.62 1.18 16 14 C 0.07 0.19 10.24 59.84 0.61 0.80 16 15 C -0.04 -0.52 11.52 -16.62 -0.19 -0.72 16 16 C 0.50 10.42 7.14 -10.99 -0.08 10.34 16 17 O -0.54 -13.44 15.42 5.56 0.09 -13.35 16 18 N -0.60 -12.56 2.86 -182.96 -0.52 -13.08 16 19 C 0.08 1.22 8.80 59.84 0.53 1.75 16 20 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 21 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 22 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 24 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 25 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.08 0.88 4.53 -51.93 -0.24 0.64 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.41 6.53 7.92 -40.82 -0.32 6.21 16 33 H 0.18 2.17 7.45 -52.49 -0.39 1.78 16 34 H 0.11 0.59 7.40 -51.93 -0.38 0.21 16 35 H 0.12 0.55 8.04 -51.93 -0.42 0.13 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 38 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 39 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.08 0.10 8.07 -51.93 -0.42 -0.32 16 41 H 0.07 0.08 6.44 -51.93 -0.33 -0.25 16 42 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 44 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 45 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 46 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 47 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -39.71 397.11 -6.26 -45.97 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.20 Total: 2.82 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 0.35 Total: 13.08 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.54 Total: -63.81 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.17 Total: -21.30 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.71 -6.26 -45.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357958536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.126 kcal (2) G-P(sol) polarization free energy of solvation -39.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds