Wall clock time and date at job start Tue Mar 31 2020 20:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46919 * 2 1 4 4 N 1.46500 * 109.46641 * 119.99595 * 2 1 3 5 5 C 1.40799 * 120.00257 * 274.99697 * 4 2 1 6 6 C 1.40226 * 126.06705 * 0.03405 * 5 4 2 7 7 N 1.30856 * 108.36657 * 179.97438 * 6 5 4 8 8 N 1.40077 * 108.36214 * 359.97438 * 7 6 5 9 9 C 1.46493 * 126.07478 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47060 * 304.97767 * 9 8 7 11 11 O 1.21275 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99745 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99733 * 179.97438 * 12 10 9 14 14 C 1.46491 * 120.00220 * 0.02562 * 12 10 9 15 15 C 1.35701 * 126.07167 * 179.71328 * 5 4 2 16 16 C 1.50696 * 109.47467 * 239.99762 * 2 1 3 17 17 O 1.21280 * 120.00095 * 240.00497 * 16 2 1 18 18 N 1.34771 * 119.99966 * 60.00047 * 16 2 1 19 19 C 1.46496 * 120.00157 * 359.97438 * 18 16 2 20 20 C 1.46506 * 120.00084 * 180.02562 * 18 16 2 21 21 C 1.50699 * 109.46928 * 270.00021 * 20 18 16 22 22 H 1.08003 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00518 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46922 * 90.00621 * 25 23 21 27 27 H 1.48500 * 109.47411 * 210.00442 * 25 23 21 28 28 H 1.48494 * 109.47378 * 330.00637 * 25 23 21 29 29 H 1.09001 * 109.46709 * 60.00399 * 1 2 3 30 30 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47276 * 300.00381 * 1 2 3 32 32 H 0.96998 * 120.00245 * 95.00130 * 4 2 1 33 33 H 1.08000 * 125.81371 * 359.95062 * 6 5 4 34 34 H 1.09002 * 109.46993 * 64.97617 * 9 8 7 35 35 H 1.08997 * 109.47277 * 184.97724 * 9 8 7 36 36 H 1.09002 * 109.47253 * 90.00146 * 13 12 10 37 37 H 1.08995 * 109.47548 * 210.00131 * 13 12 10 38 38 H 1.09002 * 109.47325 * 330.00399 * 13 12 10 39 39 H 1.08998 * 109.47336 * 90.00172 * 14 12 10 40 40 H 1.09002 * 109.47239 * 209.99823 * 14 12 10 41 41 H 1.09003 * 109.47219 * 329.99871 * 14 12 10 42 42 H 1.08000 * 126.22333 * 0.02562 * 15 5 4 43 43 H 1.08995 * 109.47445 * 269.99904 * 19 18 16 44 44 H 1.09001 * 109.47057 * 30.00532 * 19 18 16 45 45 H 1.08999 * 109.47333 * 150.00092 * 19 18 16 46 46 H 1.09004 * 109.47073 * 29.99849 * 20 18 16 47 47 H 1.09000 * 109.47212 * 149.99932 * 20 18 16 48 48 H 0.96992 * 120.00316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1527 0.0119 2.4091 6 6 1.8573 1.3671 2.6153 7 7 2.1072 1.6578 3.8665 8 7 2.5704 0.4999 4.5045 9 6 2.9635 0.3888 5.9113 10 6 4.0178 1.4199 6.2213 11 8 4.4033 2.1732 5.3525 12 7 4.5324 1.5051 7.4641 13 6 5.5578 2.5071 7.7653 14 6 4.0672 0.5949 8.5134 15 6 2.5855 -0.5038 3.5873 16 6 2.0324 -0.7104 -1.2304 17 8 2.7296 -1.6965 -1.1190 18 7 1.7069 -0.2500 -2.4545 19 6 0.8642 0.9407 -2.5890 20 6 2.1949 -0.9410 -3.6506 21 6 3.5226 -0.3580 -4.0610 22 1 3.9594 0.4464 -3.4878 23 6 4.1801 -0.8523 -5.1674 24 7 3.6484 -1.8322 -5.8651 25 14 5.8255 -0.1292 -5.6765 26 1 6.9217 -0.8705 -5.0026 27 1 5.9825 -0.2440 -7.1487 28 1 5.8805 1.3016 -5.2830 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2489 -1.6317 1.1528 33 1 1.4870 2.0539 1.8687 34 1 2.0933 0.5567 6.5460 35 1 3.3634 -0.6076 6.0992 36 1 5.0791 3.4284 8.0974 37 1 6.2113 2.1328 8.5532 38 1 6.1459 2.7059 6.8693 39 1 4.6853 -0.3029 8.5161 40 1 4.1406 1.0893 9.4821 41 1 3.0294 0.3209 8.3230 42 1 2.8888 -1.5251 3.7639 43 1 -0.1836 0.6424 -2.6226 44 1 1.0273 1.5995 -1.7361 45 1 1.1219 1.4663 -3.5085 46 1 2.3156 -2.0023 -3.4333 47 1 1.4769 -0.8155 -4.4611 48 1 4.1108 -2.1797 -6.6437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357958536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:20 Heat of formation + Delta-G solvation = 12.676995 kcal Electronic energy + Delta-G solvation = -28886.405660 eV Core-core repulsion = 24785.482915 eV Total energy + Delta-G solvation = -4100.922746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09434 -40.93954 -40.59288 -36.93046 -36.61859 -36.51727 -34.79552 -33.96282 -32.15181 -30.30114 -29.53146 -28.67529 -27.85833 -27.47907 -26.21491 -25.62655 -23.75642 -22.49767 -21.53279 -20.40012 -19.81143 -18.75472 -18.49921 -18.25974 -17.73471 -17.33464 -17.04285 -16.73884 -16.49967 -16.25775 -15.86452 -15.52720 -15.20609 -15.13632 -14.66540 -14.40912 -14.31260 -14.23500 -14.13533 -13.61724 -13.54849 -13.45061 -13.43782 -13.36692 -13.23757 -13.10256 -12.89464 -12.85826 -12.69599 -12.56794 -12.28443 -12.14463 -11.69508 -11.66982 -11.24326 -10.97327 -10.65454 -10.52048 -10.18625 -9.72847 -9.42277 -8.23185 -7.97987 -6.37397 0.93880 1.35182 1.38009 1.47268 1.48237 1.48983 1.78849 2.07098 2.07748 2.23480 2.39945 2.83411 3.06220 3.40821 3.63257 3.79409 4.03845 4.08394 4.10873 4.26710 4.29498 4.32603 4.39555 4.43306 4.48217 4.64468 4.69745 4.77930 4.81710 4.87928 4.88611 4.89955 4.96625 5.01865 5.04806 5.23027 5.34499 5.44048 5.46550 5.55542 5.82765 6.04080 6.05935 6.29905 6.42314 6.70184 6.75788 6.78325 7.04347 7.08354 7.26777 7.44121 8.83629 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.002185 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.811871 B =12809.739510 C =13826.782675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.103 0.897 4 N -0.730 5.730 5 C 0.059 3.941 6 C -0.002 4.002 7 N -0.283 5.283 8 N -0.368 5.368 9 C 0.125 3.875 10 C 0.487 3.513 11 O -0.571 6.571 12 N -0.620 5.620 13 C 0.083 3.917 14 C 0.064 3.936 15 C -0.030 4.030 16 C 0.492 3.508 17 O -0.591 6.591 18 N -0.604 5.604 19 C 0.071 3.929 20 C 0.259 3.741 21 C -0.542 4.542 22 H 0.050 0.950 23 C 0.008 3.992 24 N -0.926 5.926 25 Si 0.964 3.036 26 H -0.282 1.282 27 H -0.272 1.272 28 H -0.264 1.264 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.400 0.600 33 H 0.191 0.809 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.198 0.802 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.067 0.933 46 H -0.001 1.001 47 H 0.028 0.972 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 5.620 31.592 32.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.120 0.880 4 N -0.368 5.368 5 C -0.049 4.049 6 C -0.191 4.191 7 N -0.105 5.105 8 N -0.156 5.156 9 C 0.001 3.999 10 C 0.274 3.726 11 O -0.449 6.449 12 N -0.355 5.355 13 C -0.060 4.060 14 C -0.077 4.077 15 C -0.176 4.176 16 C 0.280 3.720 17 O -0.472 6.472 18 N -0.335 5.335 19 C -0.070 4.070 20 C 0.138 3.862 21 C -0.581 4.581 22 H 0.068 0.932 23 C -0.191 4.191 24 N -0.566 5.566 25 Si 0.789 3.211 26 H -0.208 1.208 27 H -0.197 1.197 28 H -0.188 1.188 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.236 0.764 33 H 0.208 0.792 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.215 0.785 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.017 0.983 47 H 0.046 0.954 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.621 6.454 31.946 33.073 hybrid contribution 1.309 -0.868 -1.508 2.177 sum -4.312 5.586 30.439 31.246 Atomic orbital electron populations 1.22424 0.91842 1.03121 1.04715 1.20470 0.96177 0.96165 0.82240 0.87956 1.43522 1.76949 1.11768 1.04554 1.17832 1.07356 0.92265 0.87431 1.23827 1.05281 0.95010 0.94957 1.77192 1.17923 1.07712 1.07666 1.47753 1.52873 1.06055 1.08969 1.21792 0.98530 1.01315 0.78240 1.21303 0.83430 0.85384 0.82494 1.90787 1.61614 1.44757 1.47737 1.47914 1.40800 1.36716 1.10048 1.21708 0.90957 0.91628 1.01685 1.22238 1.01485 0.93464 0.90507 1.22030 1.10839 0.96178 0.88570 1.21376 0.80028 0.84789 0.85789 1.90609 1.40276 1.29431 1.86931 1.48081 1.50021 1.29469 1.05904 1.22183 0.94479 0.86467 1.03895 1.18776 0.93683 0.91764 0.81978 1.21696 1.05966 1.19055 1.11361 0.93168 1.25821 1.01664 0.95315 0.96295 1.70035 1.40530 1.27149 1.18863 0.85463 0.79048 0.78971 0.77616 1.20836 1.19702 1.18847 0.88859 0.93023 0.89751 0.76414 0.79176 0.84266 0.82063 0.92425 0.87961 0.93417 0.90500 0.88873 0.88914 0.78519 0.90048 0.88827 0.91447 0.98260 0.95393 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.14 71.98 0.66 -3.02 16 2 C 0.16 4.79 2.19 44.25 0.10 4.88 16 3 H 0.10 2.84 6.42 -2.38 -0.02 2.82 16 4 N -0.73 -22.07 5.19 -323.01 -1.68 -23.75 16 5 C 0.06 1.63 6.94 37.59 0.26 1.89 16 6 C 0.00 -0.06 11.15 85.32 0.95 0.89 16 7 N -0.28 -8.38 11.64 -56.78 -0.66 -9.04 16 8 N -0.37 -8.61 3.43 -350.65 -1.20 -9.81 16 9 C 0.13 1.66 5.55 85.63 0.48 2.14 16 10 C 0.49 9.78 7.70 87.66 0.68 10.46 16 11 O -0.57 -18.75 15.29 -3.01 -0.05 -18.80 16 12 N -0.62 -7.54 3.27 -871.90 -2.85 -10.40 16 13 C 0.08 1.00 10.44 127.77 1.33 2.33 16 14 C 0.06 0.09 10.24 127.77 1.31 1.40 16 15 C -0.03 -0.70 11.52 83.46 0.96 0.26 16 16 C 0.49 20.76 7.14 87.66 0.63 21.38 16 17 O -0.59 -30.86 15.42 -3.03 -0.05 -30.91 16 18 N -0.60 -25.63 2.86 -851.14 -2.43 -28.07 16 19 C 0.07 2.09 8.80 127.77 1.12 3.21 16 20 C 0.26 14.11 5.16 85.63 0.44 14.55 16 21 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 22 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 23 C 0.01 0.48 5.46 84.65 0.46 0.94 16 24 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 25 Si 0.96 46.07 29.54 68.60 2.03 48.09 16 26 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 29 H 0.09 1.80 4.53 -2.39 -0.01 1.79 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.40 13.02 7.92 -92.71 -0.73 12.29 16 33 H 0.19 4.43 7.45 -2.91 -0.02 4.41 16 34 H 0.14 0.99 7.40 -2.39 -0.02 0.98 16 35 H 0.16 0.76 8.04 -2.39 -0.02 0.75 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.55 8.07 -2.39 -0.02 0.53 16 38 H 0.05 0.87 7.42 -2.39 -0.02 0.86 16 39 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.09 -0.12 8.07 -2.39 -0.02 -0.14 16 41 H 0.09 -0.20 6.44 -2.39 -0.02 -0.21 16 42 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.08 1.89 6.95 -2.39 -0.02 1.88 16 44 H 0.09 2.11 6.01 -2.39 -0.01 2.10 16 45 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 46 H 0.00 -0.05 7.42 -2.38 -0.02 -0.06 16 47 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 48 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -92.72 397.11 3.26 -89.46 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.25 Total: 19.78 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 9.62 Total: 29.71 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -8.54 Total: -137.34 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.09 Total: -49.71 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -92.72 3.26 -89.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357958536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.136 kcal (2) G-P(sol) polarization free energy of solvation -92.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds