Wall clock time and date at job start Tue Mar 31 2020 20:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.40807 * 119.99701 * 85.00124 * 4 2 1 6 6 C 1.40218 * 126.06907 * 0.02562 * 5 4 2 7 7 N 1.30864 * 108.36649 * 179.97438 * 6 5 4 8 8 N 1.40078 * 108.35670 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.06618 * 180.02562 * 8 7 6 10 10 C 1.50692 * 109.47462 * 304.97938 * 9 8 7 11 11 O 1.21278 * 120.00120 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99806 * 180.02562 * 10 9 8 13 13 C 1.46508 * 119.99652 * 180.02562 * 12 10 9 14 14 C 1.46499 * 120.00315 * 359.97438 * 12 10 9 15 15 C 1.35706 * 126.06563 * 179.71438 * 5 4 2 16 16 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 17 17 O 1.21279 * 120.00072 * 119.99863 * 16 2 1 18 18 N 1.34777 * 119.99762 * 300.00068 * 16 2 1 19 19 C 1.46504 * 119.99858 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00258 * 180.02562 * 18 16 2 21 21 C 1.50703 * 109.47468 * 89.99360 * 20 18 16 22 22 H 1.08005 * 119.99703 * 0.02562 * 21 20 18 23 23 C 1.37872 * 120.00292 * 180.02562 * 21 20 18 24 24 N 1.31518 * 119.99761 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00272 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46883 * 59.99821 * 25 23 21 27 27 H 1.48496 * 109.47019 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46839 * 299.99831 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 33 33 H 1.08004 * 125.81329 * 359.96637 * 6 5 4 34 34 H 1.08998 * 109.47107 * 64.98177 * 9 8 7 35 35 H 1.09002 * 109.46729 * 184.97615 * 9 8 7 36 36 H 1.08995 * 109.47413 * 89.99519 * 13 12 10 37 37 H 1.09001 * 109.46593 * 209.99791 * 13 12 10 38 38 H 1.09004 * 109.46783 * 329.98974 * 13 12 10 39 39 H 1.09000 * 109.46601 * 60.00168 * 14 12 10 40 40 H 1.09002 * 109.47084 * 180.02562 * 14 12 10 41 41 H 1.08995 * 109.47082 * 300.00425 * 14 12 10 42 42 H 1.08004 * 126.22352 * 0.02562 * 15 5 4 43 43 H 1.09002 * 109.46944 * 90.00712 * 19 18 16 44 44 H 1.09001 * 109.47272 * 209.99997 * 19 18 16 45 45 H 1.08996 * 109.47264 * 330.00264 * 19 18 16 46 46 H 1.08997 * 109.47484 * 209.99674 * 20 18 16 47 47 H 1.09004 * 109.47079 * 329.99531 * 20 18 16 48 48 H 0.96999 * 119.99754 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1528 0.0117 -2.4090 6 6 1.8584 1.3671 -2.6151 7 7 2.1090 1.6579 -3.8662 8 7 2.5716 0.4998 -4.5041 9 6 2.9662 0.3890 -5.9107 10 6 1.8350 0.8591 -6.7883 11 8 0.8008 1.2480 -6.2882 12 7 1.9723 0.8464 -8.1290 13 6 0.8727 1.3041 -8.9822 14 6 3.2213 0.3761 -8.7331 15 6 2.5960 -0.5015 -3.5845 16 6 2.0324 -0.7105 1.2305 17 8 2.7296 -1.6965 1.1192 18 7 1.7067 -0.2500 2.4546 19 6 0.8649 0.9415 2.5890 20 6 2.1955 -0.9402 3.6508 21 6 3.5229 -0.3562 4.0607 22 1 3.9587 0.4489 3.4876 23 6 4.1810 -0.8497 5.1671 24 7 3.6501 -1.8298 5.8651 25 14 5.8261 -0.1253 5.6756 26 1 5.6600 1.3202 5.9721 27 1 6.3215 -0.8251 6.8880 28 1 6.8042 -0.2950 4.5712 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 1.4877 2.0539 -1.8686 34 1 3.8464 1.0060 -6.0908 35 1 3.1978 -0.6507 -6.1422 36 1 0.9751 2.3738 -9.1644 37 1 0.9027 0.7692 -9.9315 38 1 -0.0778 1.1094 -8.4855 39 1 3.3993 -0.6586 -8.4404 40 1 3.1461 0.4393 -9.8187 41 1 4.0478 0.9982 -8.3897 42 1 2.9083 -1.5206 -3.7587 43 1 -0.1832 0.6439 2.6222 44 1 1.1227 1.4667 3.5086 45 1 1.0288 1.6002 1.7362 46 1 1.4776 -0.8150 4.4614 47 1 2.3169 -2.0015 3.4337 48 1 4.1130 -2.1767 6.6438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357958537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:22 Heat of formation + Delta-G solvation = 12.524808 kcal Electronic energy + Delta-G solvation = -28836.928164 eV Core-core repulsion = 24735.998819 eV Total energy + Delta-G solvation = -4100.929345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09278 -40.93247 -40.57868 -36.92982 -36.60589 -36.50668 -34.78125 -33.95260 -32.15666 -30.27800 -29.51562 -28.67772 -27.86967 -27.47744 -26.20490 -25.62159 -23.75823 -22.48648 -21.53135 -20.40299 -19.81453 -18.74030 -18.48509 -18.21484 -17.73980 -17.32405 -17.04749 -16.71242 -16.49086 -16.27208 -15.77306 -15.65957 -15.22596 -15.06527 -14.62858 -14.40389 -14.28470 -14.22182 -14.13481 -13.63154 -13.57063 -13.48156 -13.44068 -13.38275 -13.18306 -13.11304 -12.89996 -12.82316 -12.71016 -12.54160 -12.28322 -12.14102 -11.70879 -11.66212 -11.22611 -10.97635 -10.63147 -10.51848 -10.19049 -9.71448 -9.41678 -8.21373 -7.98316 -6.35943 0.95134 1.37224 1.41188 1.45687 1.48611 1.49792 1.79228 2.05776 2.11181 2.22894 2.41410 2.83349 3.08074 3.41820 3.63152 3.78117 4.03341 4.07656 4.15055 4.25810 4.28091 4.31745 4.42191 4.43358 4.50306 4.63956 4.69573 4.77117 4.81221 4.86934 4.88057 4.89990 4.97725 5.02043 5.04042 5.23885 5.32259 5.45982 5.46828 5.56534 5.83546 6.03511 6.07073 6.30120 6.42207 6.71237 6.75589 6.78696 7.04180 7.08809 7.27970 7.44758 8.85293 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.002001 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.736177 B =13989.843134 C =14576.270259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.107 0.893 4 N -0.730 5.730 5 C 0.059 3.941 6 C -0.002 4.002 7 N -0.283 5.283 8 N -0.367 5.367 9 C 0.125 3.875 10 C 0.490 3.510 11 O -0.568 6.568 12 N -0.620 5.620 13 C 0.083 3.917 14 C 0.064 3.936 15 C -0.030 4.030 16 C 0.494 3.506 17 O -0.590 6.590 18 N -0.603 5.603 19 C 0.071 3.929 20 C 0.259 3.741 21 C -0.543 4.543 22 H 0.052 0.948 23 C 0.008 3.992 24 N -0.927 5.927 25 Si 0.966 3.034 26 H -0.260 1.260 27 H -0.278 1.278 28 H -0.279 1.279 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.400 0.600 33 H 0.192 0.808 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.198 0.802 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.027 0.973 47 H -0.001 1.001 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 6.336 -30.902 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.125 0.875 4 N -0.368 5.368 5 C -0.049 4.049 6 C -0.190 4.190 7 N -0.105 5.105 8 N -0.156 5.156 9 C 0.001 3.999 10 C 0.277 3.723 11 O -0.446 6.446 12 N -0.354 5.354 13 C -0.059 4.059 14 C -0.077 4.077 15 C -0.176 4.176 16 C 0.281 3.719 17 O -0.471 6.471 18 N -0.334 5.334 19 C -0.070 4.070 20 C 0.138 3.862 21 C -0.582 4.582 22 H 0.071 0.929 23 C -0.191 4.191 24 N -0.567 5.567 25 Si 0.791 3.209 26 H -0.185 1.185 27 H -0.203 1.203 28 H -0.205 1.205 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.236 0.764 33 H 0.208 0.792 34 H 0.151 0.849 35 H 0.180 0.820 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.215 0.785 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.045 0.955 47 H 0.017 0.983 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.502 6.970 -31.452 32.405 hybrid contribution 0.819 -0.982 1.388 1.887 sum -2.682 5.988 -30.065 30.772 Atomic orbital electron populations 1.22433 0.92367 1.02959 1.04532 1.20455 0.95807 0.96388 0.82308 0.87533 1.43523 1.76899 1.11742 1.04629 1.17832 1.07025 0.92391 0.87636 1.23828 1.05304 0.95199 0.94718 1.77198 1.17983 1.08408 1.06954 1.47747 1.53176 1.06351 1.08352 1.21753 0.96001 1.07288 0.74907 1.21176 0.89120 0.78491 0.83544 1.90771 1.31337 1.47977 1.74505 1.47907 1.18109 1.64583 1.04846 1.21755 0.89309 1.00104 0.94779 1.22232 0.83788 1.00828 1.00867 1.22035 1.10818 0.96240 0.88525 1.21333 0.80026 0.84778 0.85722 1.90608 1.40275 1.29339 1.86909 1.48077 1.50011 1.29449 1.05904 1.22180 0.94412 0.86479 1.03964 1.18773 0.93728 0.91772 0.81928 1.21674 1.05947 1.19102 1.11450 0.92941 1.25845 1.01751 0.95283 0.96266 1.70043 1.40670 1.27159 1.18793 0.85487 0.78918 0.79093 0.77430 1.18492 1.20314 1.20459 0.90276 0.88723 0.93232 0.76408 0.79152 0.84878 0.82047 0.92626 0.87848 0.93157 0.89869 0.88091 0.90473 0.78518 0.90299 0.91335 0.88739 0.95542 0.98309 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.14 71.98 0.66 -3.30 16 2 C 0.16 4.82 2.19 44.25 0.10 4.92 16 3 H 0.11 2.87 6.42 -2.39 -0.02 2.85 16 4 N -0.73 -22.12 5.19 -323.02 -1.68 -23.80 16 5 C 0.06 1.63 6.94 37.59 0.26 1.89 16 6 C 0.00 -0.06 11.15 85.32 0.95 0.90 16 7 N -0.28 -8.43 11.64 -56.77 -0.66 -9.09 16 8 N -0.37 -8.68 3.43 -350.64 -1.20 -9.88 16 9 C 0.12 1.70 5.82 85.63 0.50 2.19 16 10 C 0.49 9.38 7.70 87.65 0.68 10.06 16 11 O -0.57 -17.58 15.29 -3.02 -0.05 -17.62 16 12 N -0.62 -6.98 3.27 -871.89 -2.85 -9.84 16 13 C 0.08 0.88 10.41 127.77 1.33 2.21 16 14 C 0.06 0.08 9.74 127.77 1.24 1.32 16 15 C -0.03 -0.70 11.53 83.47 0.96 0.26 16 16 C 0.49 20.63 7.14 87.66 0.63 21.25 16 17 O -0.59 -30.48 15.42 -3.03 -0.05 -30.52 16 18 N -0.60 -25.43 2.86 -851.12 -2.43 -27.86 16 19 C 0.07 2.08 8.80 127.77 1.12 3.20 16 20 C 0.26 14.02 5.16 85.63 0.44 14.47 16 21 C -0.54 -31.50 9.39 25.60 0.24 -31.26 16 22 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 23 C 0.01 0.44 5.46 84.65 0.46 0.90 16 24 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 25 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 26 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.93 4.53 -2.39 -0.01 1.92 16 31 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.40 13.04 7.92 -92.71 -0.73 12.31 16 33 H 0.19 4.44 7.45 -2.91 -0.02 4.42 16 34 H 0.13 1.17 7.87 -2.39 -0.02 1.15 16 35 H 0.16 0.79 7.80 -2.39 -0.02 0.77 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.38 7.92 -2.39 -0.02 0.36 16 38 H 0.05 0.82 7.42 -2.38 -0.02 0.80 16 39 H 0.08 -0.16 7.85 -2.39 -0.02 -0.18 16 40 H 0.10 -0.22 7.80 -2.39 -0.02 -0.24 16 41 H 0.08 -0.04 7.85 -2.39 -0.02 -0.06 16 42 H 0.20 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.08 1.87 6.95 -2.39 -0.02 1.85 16 44 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 45 H 0.09 2.11 6.01 -2.39 -0.01 2.09 16 46 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 47 H 0.00 -0.08 7.42 -2.38 -0.02 -0.09 16 48 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -90.78 397.76 3.21 -87.57 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.25 Total: 20.73 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 9.57 Total: 29.02 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -8.54 Total: -136.44 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.09 Total: -48.15 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -90.78 3.21 -87.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357958537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.098 kcal (2) G-P(sol) polarization free energy of solvation -90.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds