Wall clock time and date at job start Tue Mar 31 2020 20:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47227 * 120.00200 * 2 1 3 5 5 C 1.39986 * 119.99998 * 275.00003 * 4 2 1 6 6 C 1.40426 * 125.97564 * 0.02562 * 5 4 2 7 7 C 1.35248 * 107.86223 * 179.97438 * 6 5 4 8 8 N 1.34965 * 107.86209 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.97151 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47012 * 125.00573 * 9 8 7 11 11 O 1.21287 * 120.00082 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00205 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99860 * 179.97438 * 12 10 9 14 14 C 1.46497 * 119.99551 * 359.97438 * 12 10 9 15 15 N 1.31228 * 125.97300 * 179.68692 * 5 4 2 16 16 C 1.50706 * 109.46913 * 240.00627 * 2 1 3 17 17 O 1.21281 * 119.99660 * 239.99632 * 16 2 1 18 18 N 1.34771 * 120.00094 * 59.99917 * 16 2 1 19 19 C 1.46501 * 120.00308 * 359.97438 * 18 16 2 20 20 C 1.46506 * 119.99594 * 179.97438 * 18 16 2 21 21 C 1.50699 * 109.46928 * 90.00049 * 20 18 16 22 22 H 1.08003 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00518 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47000 * 60.00482 * 25 23 21 27 27 H 1.48506 * 109.47330 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47185 * 300.00291 * 25 23 21 29 29 H 1.08992 * 109.47310 * 299.99576 * 1 2 3 30 30 H 1.09003 * 109.47197 * 60.00227 * 1 2 3 31 31 H 1.09000 * 109.46579 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99902 * 95.00338 * 4 2 1 33 33 H 1.07995 * 126.07066 * 359.97438 * 6 5 4 34 34 H 1.08003 * 126.07028 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47501 * 245.00709 * 9 8 7 36 36 H 1.09007 * 109.47155 * 5.01067 * 9 8 7 37 37 H 1.09000 * 109.46786 * 90.00237 * 13 12 10 38 38 H 1.09001 * 109.46855 * 209.99526 * 13 12 10 39 39 H 1.08997 * 109.47487 * 330.00081 * 13 12 10 40 40 H 1.08994 * 109.47509 * 0.02562 * 14 12 10 41 41 H 1.09008 * 109.46819 * 120.00810 * 14 12 10 42 42 H 1.08999 * 109.46673 * 239.99608 * 14 12 10 43 43 H 1.08999 * 109.46532 * 269.99942 * 19 18 16 44 44 H 1.09000 * 109.46877 * 29.99967 * 19 18 16 45 45 H 1.09000 * 109.47251 * 150.00072 * 19 18 16 46 46 H 1.09004 * 109.47073 * 209.99877 * 20 18 16 47 47 H 1.09000 * 109.47212 * 329.99960 * 20 18 16 48 48 H 0.96992 * 120.00316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1521 0.0077 2.4020 6 6 1.8556 1.3650 2.6065 7 6 2.1167 1.6561 3.9012 8 7 2.5609 0.5297 4.4974 9 6 2.9584 0.3984 5.9013 10 6 2.1724 -0.7154 6.5438 11 8 1.3599 -1.3379 5.8931 12 7 2.3716 -1.0191 7.8417 13 6 1.6071 -2.1015 8.4664 14 6 3.3526 -0.2668 8.6277 15 7 2.5705 -0.4932 3.5405 16 6 2.0323 -0.7103 -1.2306 17 8 2.7296 -1.6964 -1.1194 18 7 1.7067 -0.2498 -2.4546 19 6 0.8640 0.9411 -2.5890 20 6 2.1956 -0.9400 -3.6508 21 6 1.2034 -1.9974 -4.0613 22 1 0.2989 -2.1407 -3.4886 23 6 1.4497 -2.7813 -5.1684 24 7 2.5508 -2.6066 -5.8661 25 14 0.2202 -4.0925 -5.6768 26 1 -1.0886 -3.4560 -5.9720 27 1 0.7156 -4.7922 -6.8894 28 1 0.0565 -5.0722 -4.5728 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1525 33 1 1.4850 2.0540 1.8621 34 1 1.9912 2.6188 4.3743 35 1 4.0230 0.1714 5.9579 36 1 2.7578 1.3334 6.4246 37 1 2.1478 -3.0410 8.3522 38 1 1.4725 -1.8863 9.5265 39 1 0.6324 -2.1825 7.9854 40 1 3.8175 0.4921 7.9985 41 1 2.8525 0.2149 9.4681 42 1 4.1173 -0.9475 9.0018 43 1 -0.1838 0.6426 -2.6225 44 1 1.0272 1.5997 -1.7359 45 1 1.1217 1.4667 -3.5084 46 1 2.3165 -0.2211 -4.4612 47 1 3.1559 -1.4076 -3.4336 48 1 2.7243 -3.1583 -6.6447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359073394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:16 Heat of formation + Delta-G solvation = 46.353378 kcal Electronic energy + Delta-G solvation = -28958.632448 eV Core-core repulsion = 24859.170020 eV Total energy + Delta-G solvation = -4099.462428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16140 -39.92805 -39.27440 -35.97344 -35.68733 -34.88460 -33.13626 -32.48398 -30.64568 -29.42738 -28.76376 -27.55775 -27.24981 -26.11416 -25.42755 -23.89682 -22.28987 -21.39190 -20.25100 -19.56781 -18.49104 -17.69359 -17.37274 -16.78707 -16.48901 -16.38364 -15.90959 -15.71275 -15.09460 -14.78992 -14.60163 -14.44877 -14.10366 -13.85936 -13.67492 -13.37163 -13.26015 -13.09702 -13.01881 -12.89708 -12.74349 -12.46599 -12.42839 -12.25233 -12.00654 -11.91519 -11.51238 -11.28093 -11.16189 -10.83067 -10.55571 -10.48147 -10.23994 -10.12408 -9.95306 -9.61915 -9.15968 -8.88916 -8.60916 -8.40266 -7.65752 -7.45605 -6.01453 -4.05992 1.90868 2.22264 2.25137 2.65710 3.22907 3.34350 3.36347 3.39237 3.44987 3.57646 3.96218 4.10228 4.30603 4.46613 4.47790 4.67916 4.71526 4.77927 4.86563 5.00931 5.06660 5.15739 5.23769 5.33286 5.42523 5.43087 5.49870 5.56814 5.71298 5.77724 5.93319 5.93824 5.94911 5.96986 6.20711 6.42350 6.43915 6.78176 7.02385 7.06039 7.31621 7.45674 7.53689 7.78134 7.91413 7.94961 8.25480 8.28904 8.43092 8.90734 9.06385 9.58785 11.06636 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.002080 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.653320 B =13458.936906 C =14128.397310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.149 3.851 3 H 0.095 0.905 4 N -0.700 5.700 5 C 0.347 3.653 6 C -0.299 4.299 7 C 0.071 3.929 8 N -0.373 5.373 9 C 0.129 3.871 10 C 0.495 3.505 11 O -0.497 6.497 12 N -0.627 5.627 13 C 0.087 3.913 14 C 0.074 3.926 15 N -0.327 5.327 16 C 0.502 3.498 17 O -0.534 6.534 18 N -0.597 5.597 19 C 0.081 3.919 20 C 0.246 3.754 21 C -0.526 4.526 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.413 0.587 33 H 0.145 0.855 34 H 0.170 0.830 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.044 0.956 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 14.162 29.234 32.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.039 3.961 3 H 0.113 0.887 4 N -0.342 5.342 5 C 0.087 3.913 6 C -0.331 4.331 7 C -0.074 4.074 8 N -0.156 5.156 9 C 0.003 3.997 10 C 0.280 3.720 11 O -0.369 6.369 12 N -0.364 5.364 13 C -0.055 4.055 14 C -0.069 4.069 15 N -0.159 5.159 16 C 0.287 3.713 17 O -0.411 6.411 18 N -0.330 5.330 19 C -0.063 4.063 20 C 0.127 3.873 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.163 0.837 34 H 0.188 0.812 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.024 12.339 29.362 31.849 hybrid contribution -0.856 -0.270 -0.620 1.091 sum -0.880 12.069 28.742 31.185 Atomic orbital electron populations 1.22478 0.94081 1.03673 1.03077 1.20594 0.94799 0.96613 0.84096 0.88717 1.43434 1.74222 1.12794 1.03776 1.19225 0.94578 0.90467 0.87033 1.21076 1.19021 0.95841 0.97189 1.22282 0.99312 0.92133 0.93684 1.47461 1.54000 1.06927 1.07194 1.21329 1.00218 0.99503 0.78696 1.20781 0.84064 0.85510 0.81612 1.90832 1.33901 1.50900 1.61244 1.47749 1.41742 1.36543 1.10403 1.21613 0.97105 0.89256 0.97572 1.21885 0.92103 0.96446 0.96467 1.77649 1.32365 1.09584 0.96272 1.20277 0.81376 0.85157 0.84489 1.90675 1.38363 1.26117 1.85965 1.48070 1.49705 1.28109 1.07073 1.21835 0.95217 0.87550 1.01701 1.19332 0.96082 0.91963 0.79955 1.21383 1.05943 1.17957 1.11164 0.92463 1.24934 0.95622 0.97293 0.96292 1.69918 1.24850 1.40270 1.18384 0.86557 0.81155 0.81806 0.77894 1.20242 1.21209 1.20175 0.91722 0.90069 0.91785 0.74922 0.83702 0.81245 0.87288 0.86165 0.92599 0.91172 0.90467 0.90427 0.91656 0.91614 0.92607 0.92310 0.91290 0.94831 0.93808 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.14 37.16 0.34 -2.14 16 2 C 0.15 2.42 2.18 -69.08 -0.15 2.27 16 3 H 0.10 1.32 6.40 -51.93 -0.33 0.98 16 4 N -0.70 -12.34 5.16 -54.70 -0.28 -12.62 16 5 C 0.35 5.73 8.14 -154.55 -1.26 4.48 16 6 C -0.30 -3.86 9.92 -39.82 -0.40 -4.25 16 7 C 0.07 0.75 11.44 -17.24 -0.20 0.55 16 8 N -0.37 -4.66 3.40 -62.56 -0.21 -4.87 16 9 C 0.13 1.01 5.30 -5.19 -0.03 0.98 16 10 C 0.50 5.31 7.70 -10.98 -0.08 5.22 16 11 O -0.50 -8.13 15.27 5.55 0.08 -8.04 16 12 N -0.63 -4.50 3.27 -189.51 -0.62 -5.12 16 13 C 0.09 0.58 10.48 59.85 0.63 1.21 16 14 C 0.07 0.19 10.60 59.85 0.63 0.83 16 15 N -0.33 -5.63 11.64 31.41 0.37 -5.26 16 16 C 0.50 10.68 7.14 -10.99 -0.08 10.60 16 17 O -0.53 -13.82 15.42 5.56 0.09 -13.73 16 18 N -0.60 -12.64 2.86 -182.95 -0.52 -13.17 16 19 C 0.08 1.24 8.85 59.85 0.53 1.77 16 20 C 0.25 6.47 5.20 -5.19 -0.03 6.45 16 21 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 22 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 25 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.03 4.53 -51.93 -0.24 0.79 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 8.12 7.92 -40.82 -0.32 7.80 16 33 H 0.15 1.56 7.45 -52.49 -0.39 1.17 16 34 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.11 0.66 7.79 -51.93 -0.40 0.25 16 36 H 0.12 0.39 7.71 -51.92 -0.40 -0.01 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 39 H 0.08 0.67 7.42 -51.93 -0.39 0.29 16 40 H 0.08 0.07 5.77 -51.93 -0.30 -0.23 16 41 H 0.06 0.08 8.14 -51.92 -0.42 -0.34 16 42 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.06 0.82 6.95 -51.93 -0.36 0.46 16 44 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 45 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 46 H 0.03 0.88 7.89 -51.93 -0.41 0.47 16 47 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -40.82 396.21 -7.07 -47.90 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.15 Total: 3.64 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -0.51 Total: 14.24 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.54 Total: -67.21 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.17 Total: -21.78 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.82 -7.07 -47.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359073394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.250 kcal (2) G-P(sol) polarization free energy of solvation -40.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds